RNA–Protein interactions for RNA: ENST00000298454.3

VSTM4-201, Transcript of V-set and transmembrane domain containing 4, humanhuman

APPRIS P3 TSL 2 BASIC

Gene VSTM4, Length 2,170 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSTM4-201ENST00000298454 PIK3C2BO00750 1634 aa31.37■■■□□ 2.61
VSTM4-201ENST00000298454 DISP3Q9P2K9 1392 aa31.37■■■□□ 2.61
VSTM4-201ENST00000298454 KIAA1210Q9ULL0 1709 aa31.37■■■□□ 2.61
VSTM4-201ENST00000298454 SCAF11Q99590 1463 aaKnown RBP31.36■■■□□ 2.61
VSTM4-201ENST00000298454 NRXN1Q9ULB1 1477 aa31.36■■■□□ 2.61
VSTM4-201ENST00000298454 CCDC184Q52MB2 194 aa31.34■■■□□ 2.61
VSTM4-201ENST00000298454 ARHGEF40Q8TER5 1519 aa31.34■■■□□ 2.61
VSTM4-201ENST00000298454 IDI1Q13907 227 aa31.32■■■□□ 2.6
VSTM4-201ENST00000298454 TMF1P82094 1093 aa31.31■■■□□ 2.6
VSTM4-201ENST00000298454 CNGB1Q14028 1251 aaPredicted RBP31.31■■■□□ 2.6
VSTM4-201ENST00000298454 PPLO60437 1756 aa31.3■■■□□ 2.6
VSTM4-201ENST00000298454 PREX1Q8TCU6 1659 aa31.3■■■□□ 2.6
VSTM4-201ENST00000298454 RPGRIP1LQ68CZ1 1315 aa31.3■■■□□ 2.6
VSTM4-201ENST00000298454 MLECQ14165 292 aa31.29■■■□□ 2.6
VSTM4-201ENST00000298454 FBXO31Q5XUX0 539 aaPredicted RBP31.29■■■□□ 2.6
VSTM4-201ENST00000298454 SLC52A1Q9NWF4 448 aa31.28■■■□□ 2.6
VSTM4-201ENST00000298454 PPP6R1Q9UPN7 881 aa31.27■■■□□ 2.6
VSTM4-201ENST00000298454 PIK3C2GO75747 1445 aa31.26■■■□□ 2.59
VSTM4-201ENST00000298454 EIF3AQ14152 1382 aaKnown RBP31.23■■■□□ 2.59
VSTM4-201ENST00000298454 CLTCQ00610 1675 aaKnown RBP31.23■■■□□ 2.59
VSTM4-201ENST00000298454 NUTM2DQ5VT03 806 aaPredicted RBP31.22■■■□□ 2.59
VSTM4-201ENST00000298454 MRS2Q9HD23 443 aa31.22■■■□□ 2.59
VSTM4-201ENST00000298454 ERVK-7P63135 1459 aa31.22■■■□□ 2.59
VSTM4-201ENST00000298454 NEXMIFQ5QGS0 1516 aa31.21■■■□□ 2.59
VSTM4-201ENST00000298454 C14orf93Q9H972 538 aaKnown RBP31.2■■■□□ 2.58
VSTM4-201ENST00000298454 SETBP1Q9Y6X0 1596 aa31.16■■■□□ 2.58
VSTM4-201ENST00000298454 VGFO15240 615 aaPredicted RBP31.16■■■□□ 2.58
VSTM4-201ENST00000298454 TMEM131LA2VDJ0 1609 aa31.15■■■□□ 2.58
VSTM4-201ENST00000298454 PER1O15534 1290 aaPredicted RBP31.14■■■□□ 2.58
VSTM4-201ENST00000298454 PANK3Q9H999 370 aa31.12■■■□□ 2.57
VSTM4-201ENST00000298454 ADGRB1O14514 1584 aa31.12■■■□□ 2.57
VSTM4-201ENST00000298454 MYO5BQ9ULV0 1848 aa31.12■■■□□ 2.57
VSTM4-201ENST00000298454 TMEM132EQ6IEE7 984 aa31.12■■■□□ 2.57
VSTM4-201ENST00000298454 FAM9BQ8IZU0 186 aa31.11■■■□□ 2.57
VSTM4-201ENST00000298454 HNRNPUQ00839 825 aaKnown RBP eCLIP31.09■■■□□ 2.57
VSTM4-201ENST00000298454 CDCA8Q53HL2 280 aa31.09■■■□□ 2.57
VSTM4-201ENST00000298454 SPATA31D1Q6ZQQ2 1576 aa31.08■■■□□ 2.57
VSTM4-201ENST00000298454 TRAK1Q9UPV9 953 aa31.08■■■□□ 2.57
VSTM4-201ENST00000298454 ZFYVE9O95405 1425 aa31.07■■■□□ 2.56
VSTM4-201ENST00000298454 TRHP20396 242 aaPredicted RBP31.06■■■□□ 2.56
VSTM4-201ENST00000298454 ESF1Q9H501 851 aaKnown RBP31.06■■■□□ 2.56
VSTM4-201ENST00000298454 RALBP1Q15311 655 aa31.05■■■□□ 2.56
VSTM4-201ENST00000298454 MYO3AQ8NEV4 1616 aa31.05■■■□□ 2.56
VSTM4-201ENST00000298454 KTN1Q86UP2 1357 aaKnown RBP31.05■■■□□ 2.56
VSTM4-201ENST00000298454 STAG3Q9UJ98 1225 aa31.04■■■□□ 2.56
VSTM4-201ENST00000298454 ZMYM3Q14202 1370 aa31.04■■■□□ 2.56
VSTM4-201ENST00000298454 SENP3Q9H4L4 574 aaPredicted RBP31.03■■■□□ 2.56
VSTM4-201ENST00000298454 CENPJQ9HC77 1338 aaPredicted RBP31.02■■■□□ 2.56
VSTM4-201ENST00000298454 MYBBP1AQ9BQG0 1328 aaKnown RBP31.01■■■□□ 2.55
VSTM4-201ENST00000298454 SLC24A1O60721 1099 aa31■■■□□ 2.55
VSTM4-201ENST00000298454 PARD3Q8TEW0 1356 aa31■■■□□ 2.55
VSTM4-201ENST00000298454 SBNO2Q9Y2G9 1366 aa30.99■■■□□ 2.55
VSTM4-201ENST00000298454 KDM5AP29375 1690 aaKnown RBP30.98■■■□□ 2.55
VSTM4-201ENST00000298454 CC2D1BQ5T0F9 858 aaKnown RBP30.97■■■□□ 2.55
VSTM4-201ENST00000298454 A2ML1A8K2U0 1454 aa30.96■■■□□ 2.55
VSTM4-201ENST00000298454 MYOM1P52179 1685 aa30.96■■■□□ 2.55
VSTM4-201ENST00000298454 TMC1Q8TDI8 760 aa30.96■■■□□ 2.55
VSTM4-201ENST00000298454 QRICH2Q9H0J4 1663 aa30.92■■■□□ 2.54
VSTM4-201ENST00000298454 BRD4O60885 1362 aaPredicted RBP30.92■■■□□ 2.54
VSTM4-201ENST00000298454 ASXL1Q8IXJ9 1541 aa30.92■■■□□ 2.54
VSTM4-201ENST00000298454 PNISRQ8TF01 805 aaKnown RBP30.9■■■□□ 2.54
VSTM4-201ENST00000298454 KNSTRNQ9Y448 316 aa30.89■■■□□ 2.54
VSTM4-201ENST00000298454 ARHGEF28Q8N1W1 1705 aaKnown RBP30.88■■■□□ 2.53
VSTM4-201ENST00000298454 NLRP13Q86W25 1043 aa30.87■■■□□ 2.53
VSTM4-201ENST00000298454 RIMS2Q9UQ26 1411 aa30.87■■■□□ 2.53
VSTM4-201ENST00000298454 STK26Q9P289 416 aa30.86■■■□□ 2.53
VSTM4-201ENST00000298454 TNRQ92752 1358 aa30.85■■■□□ 2.53
VSTM4-201ENST00000298454 AMER1Q5JTC6 1135 aaPredicted RBP30.85■■■□□ 2.53
VSTM4-201ENST00000298454 ALKQ9UM73 1620 aa30.83■■■□□ 2.53
VSTM4-201ENST00000298454 ZBED9Q6R2W3 1325 aa30.8■■■□□ 2.52
VSTM4-201ENST00000298454 SAFB2Q14151 953 aaKnown RBP eCLIP30.79■■■□□ 2.52
VSTM4-201ENST00000298454 YTHDC2Q9H6S0 1430 aaKnown RBP30.79■■■□□ 2.52
VSTM4-201ENST00000298454 LRPPRCP42704 1394 aaKnown RBP30.77■■■□□ 2.52
VSTM4-201ENST00000298454 CARD14Q9BXL6 1004 aa30.77■■■□□ 2.52
VSTM4-201ENST00000298454 CEBPAP49715 358 aaPredicted RBP30.76■■■□□ 2.52
VSTM4-201ENST00000298454 PTPRMP28827 1452 aa30.76■■■□□ 2.51
VSTM4-201ENST00000298454 TULP4Q9NRJ4 1543 aa30.75■■■□□ 2.51
VSTM4-201ENST00000298454 EVC2Q86UK5 1308 aa30.75■■■□□ 2.51
VSTM4-201ENST00000298454 SLC12A5Q9H2X9 1139 aa30.73■■■□□ 2.51
VSTM4-201ENST00000298454 ABCF1Q8NE71 845 aaKnown RBP eCLIP30.72■■■□□ 2.51
VSTM4-201ENST00000298454 PRAM1Q96QH2 718 aa30.72■■■□□ 2.51
VSTM4-201ENST00000298454 NPC1L1Q9UHC9 1359 aa30.72■■■□□ 2.51
VSTM4-201ENST00000298454 SUPT16HQ9Y5B9 1047 aaKnown RBP30.71■■■□□ 2.51
VSTM4-201ENST00000298454 PPP2R1AP30153 589 aa30.69■■■□□ 2.5
VSTM4-201ENST00000298454 POGKQ9P215 609 aa30.69■■■□□ 2.5
VSTM4-201ENST00000298454 DNAJC5Q9H3Z4 198 aa30.68■■■□□ 2.5
VSTM4-201ENST00000298454 UBR1Q8IWV7 1749 aa30.68■■■□□ 2.5
VSTM4-201ENST00000298454 SENP3-EIF4A1A0A087X0R7 540 aa30.68■■■□□ 2.5
VSTM4-201ENST00000298454 PUS7Q96PZ0 661 aaKnown RBP30.68■■■□□ 2.5
VSTM4-201ENST00000298454 CABP2Q9NPB3 220 aa30.68■■■□□ 2.5
VSTM4-201ENST00000298454 SETD1AO15047 1707 aaKnown RBP30.67■■■□□ 2.5
VSTM4-201ENST00000298454 NRXN3Q9Y4C0 1643 aa30.67■■■□□ 2.5
VSTM4-201ENST00000298454 PLPPR3Q6T4P5 718 aa30.66■■■□□ 2.5
VSTM4-201ENST00000298454 TMEM2Q9UHN6 1383 aa30.66■■■□□ 2.5
VSTM4-201ENST00000298454 MINK1Q8N4C8 1332 aaPredicted RBP30.65■■■□□ 2.5
VSTM4-201ENST00000298454 C3P01024 1663 aa30.65■■■□□ 2.5
VSTM4-201ENST00000298454 FER1L4A9Z1Z3 1794 aa30.64■■■□□ 2.5
VSTM4-201ENST00000298454 HDGFP51858 240 aaKnown RBP30.64■■■□□ 2.5
VSTM4-201ENST00000298454 NSD3Q9BZ95 1437 aa30.63■■■□□ 2.49
VSTM4-201ENST00000298454 NLRP1Q9C000 1473 aa30.62■■■□□ 2.49
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms