RNA–Protein interactions for RNA: ENST00000296215.7

SNIP1-201, Transcript of Smad nuclear interacting protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNIP1, Length 4,605 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNIP1-201ENST00000296215 SMC4Q9NTJ3 1288 aa14.31□□□□□ -0.12
SNIP1-201ENST00000296215 OGFRQ9NZT2 677 aa14.31□□□□□ -0.12
SNIP1-201ENST00000296215 KIF16BQ96L93 1317 aa14.31□□□□□ -0.12
SNIP1-201ENST00000296215 TPM3P06753 285 aa14.3□□□□□ -0.12
SNIP1-201ENST00000296215 NACADO15069 1562 aa14.3□□□□□ -0.12
SNIP1-201ENST00000296215 CASC1Q6TDU7 716 aa14.3□□□□□ -0.12
SNIP1-201ENST00000296215 DNAAF4Q8WXU2 420 aa14.3□□□□□ -0.12
SNIP1-201ENST00000296215 EFCC1Q9HA90 598 aa14.3□□□□□ -0.12
SNIP1-201ENST00000296215 TMEM51Q9NW97 253 aa14.3□□□□□ -0.12
SNIP1-201ENST00000296215 ANKRD20A12PQ8NF67 263 aa14.3□□□□□ -0.12
SNIP1-201ENST00000296215 ZBTB22O15209 634 aa14.29□□□□□ -0.12
SNIP1-201ENST00000296215 MCTP1Q6DN14 999 aa14.29□□□□□ -0.12
SNIP1-201ENST00000296215 TTC31Q49AM3 519 aaPredicted RBP14.29□□□□□ -0.12
SNIP1-201ENST00000296215 HSP90B2PQ58FF3 399 aa14.29□□□□□ -0.12
SNIP1-201ENST00000296215 PPP1R15AO75807 674 aaPredicted RBP14.29□□□□□ -0.12
SNIP1-201ENST00000296215 LIG1P18858 919 aa14.28□□□□□ -0.12
SNIP1-201ENST00000296215 NOC3LQ8WTT2 800 aaKnown RBP14.28□□□□□ -0.12
SNIP1-201ENST00000296215 LOC102724159A0A0B4J2E5 919 aa14.28□□□□□ -0.12
SNIP1-201ENST00000296215 PDE3BQ13370 1112 aa14.28□□□□□ -0.12
SNIP1-201ENST00000296215 PWP2Q15269 919 aaKnown RBP14.28□□□□□ -0.12
SNIP1-201ENST00000296215 CPSF2Q9P2I0 782 aaKnown RBP14.28□□□□□ -0.12
SNIP1-201ENST00000296215 CCAR2Q8N163 923 aaKnown RBP14.28□□□□□ -0.12
SNIP1-201ENST00000296215 MEX3CQ5U5Q3 659 aaKnown RBP14.27□□□□□ -0.13
SNIP1-201ENST00000296215 TPD52L1Q16890 204 aaPredicted RBP14.27□□□□□ -0.13
SNIP1-201ENST00000296215 TXLNBQ8N3L3 684 aa14.26□□□□□ -0.13
SNIP1-201ENST00000296215 NPM1P06748 294 aaKnown RBP eCLIP14.26□□□□□ -0.13
SNIP1-201ENST00000296215 ACBD3Q9H3P7 528 aa14.26□□□□□ -0.13
SNIP1-201ENST00000296215 SKIDA1Q1XH10 827 aa14.26□□□□□ -0.13
SNIP1-201ENST00000296215 CHMP4CQ96CF2 233 aa14.26□□□□□ -0.13
SNIP1-201ENST00000296215 A0A1B0GUL7 405 aa14.25□□□□□ -0.13
SNIP1-201ENST00000296215 TMCO5BA8MYB1 307 aa14.25□□□□□ -0.13
SNIP1-201ENST00000296215 ZKSCAN5Q9Y2L8 839 aa14.24□□□□□ -0.13
SNIP1-201ENST00000296215 IRX5P78411 483 aaPredicted RBP14.24□□□□□ -0.13
SNIP1-201ENST00000296215 FOXD4L5Q5VV16 416 aaPredicted RBP14.24□□□□□ -0.13
SNIP1-201ENST00000296215 FOXD4L4Q8WXT5 416 aaPredicted RBP14.24□□□□□ -0.13
SNIP1-201ENST00000296215 POLR3GO15318 223 aaPredicted RBP14.24□□□□□ -0.13
SNIP1-201ENST00000296215 RWDD1Q9H446 243 aaPredicted RBP14.24□□□□□ -0.13
SNIP1-201ENST00000296215 HSPA5P11021 654 aaKnown RBP14.23□□□□□ -0.13
SNIP1-201ENST00000296215 RPAINQ86UA6 219 aa14.23□□□□□ -0.13
SNIP1-201ENST00000296215 SETSIPP0DME0 302 aa14.23□□□□□ -0.13
SNIP1-201ENST00000296215 SUDS3Q9H7L9 328 aaPredicted RBP14.23□□□□□ -0.13
SNIP1-201ENST00000296215 PRKRIP1Q9H875 184 aaPredicted RBP14.23□□□□□ -0.13
SNIP1-201ENST00000296215 AKNAQ7Z591 1439 aa14.23□□□□□ -0.13
SNIP1-201ENST00000296215 U2AF2P26368 475 aaKnown RBP eCLIP14.22□□□□□ -0.132e-8■■□□□ 14
SNIP1-201ENST00000296215 MAP2K2P36507 400 aa14.22□□□□□ -0.13
SNIP1-201ENST00000296215 HS1BP3Q53T59 392 aa14.22□□□□□ -0.13
SNIP1-201ENST00000296215 PMFBP1Q8TBY8 1022 aa14.22□□□□□ -0.13
SNIP1-201ENST00000296215 KNSTRNQ9Y448 316 aa14.22□□□□□ -0.13
SNIP1-201ENST00000296215 DHX57Q6P158 1386 aaKnown RBP14.22□□□□□ -0.13
SNIP1-201ENST00000296215 ATP6V1AP38606 617 aa14.22□□□□□ -0.13
SNIP1-201ENST00000296215 TPM1P09493 284 aa14.22□□□□□ -0.13
SNIP1-201ENST00000296215 CDR1P51861 262 aa14.22□□□□□ -0.13
SNIP1-201ENST00000296215 ZNF853P0CG23 659 aa14.22□□□□□ -0.13
SNIP1-201ENST00000296215 C22orf23Q9BZE7 217 aa14.21□□□□□ -0.13
SNIP1-201ENST00000296215 TRHP20396 242 aaPredicted RBP14.21□□□□□ -0.13
SNIP1-201ENST00000296215 NUCB2P80303 420 aa14.21□□□□□ -0.13
SNIP1-201ENST00000296215 CCDC191Q8NCU4 936 aa14.21□□□□□ -0.13
SNIP1-201ENST00000296215 DYDC1Q8WWB3 177 aa14.21□□□□□ -0.14
SNIP1-201ENST00000296215 CEP83Q9Y592 693 aa14.21□□□□□ -0.14
SNIP1-201ENST00000296215 CCP110O43303 1012 aa14.2□□□□□ -0.14
SNIP1-201ENST00000296215 IBSPP21815 317 aaPredicted RBP14.2□□□□□ -0.14
SNIP1-201ENST00000296215 PIK3R5Q8WYR1 880 aa14.2□□□□□ -0.14
SNIP1-201ENST00000296215 HOMER1Q86YM7 354 aa14.2□□□□□ -0.14
SNIP1-201ENST00000296215 TSPY26PQ9H489 355 aa14.2□□□□□ -0.14
SNIP1-201ENST00000296215 NF2P35240 595 aa14.19□□□□□ -0.14
SNIP1-201ENST00000296215 PPP2R5AQ15172 486 aa14.19□□□□□ -0.14
SNIP1-201ENST00000296215 CLIP1P30622 1438 aa14.19□□□□□ -0.14
SNIP1-201ENST00000296215 BMS1Q14692 1282 aaKnown RBP14.18□□□□□ -0.14
SNIP1-201ENST00000296215 MYRIPQ8NFW9 859 aa14.18□□□□□ -0.14
SNIP1-201ENST00000296215 FAM177BA6PVY3 158 aa14.18□□□□□ -0.14
SNIP1-201ENST00000296215 CCDC34Q96HJ3 373 aa14.18□□□□□ -0.14
SNIP1-201ENST00000296215 CCDC172P0C7W6 258 aa14.17□□□□□ -0.14
SNIP1-201ENST00000296215 VGFO15240 615 aaPredicted RBP14.17□□□□□ -0.14
SNIP1-201ENST00000296215 PES1O00541 588 aaKnown RBP14.17□□□□□ -0.14
SNIP1-201ENST00000296215 TMCO3Q6UWJ1 677 aa14.17□□□□□ -0.14
SNIP1-201ENST00000296215 DDX11Q96FC9 970 aa14.17□□□□□ -0.14
SNIP1-201ENST00000296215 KIAA0754O94854 1291 aa14.16□□□□□ -0.14
SNIP1-201ENST00000296215 RNF20Q5VTR2 975 aa14.16□□□□□ -0.14
SNIP1-201ENST00000296215 FAM107BQ9H098 131 aa14.16□□□□□ -0.14
SNIP1-201ENST00000296215 GEMIN8Q9NWZ8 242 aaKnown RBP14.16□□□□□ -0.14
SNIP1-201ENST00000296215 ANAPC15P60006 121 aa14.16□□□□□ -0.14
SNIP1-201ENST00000296215 CENPHQ9H3R5 247 aa14.16□□□□□ -0.14
SNIP1-201ENST00000296215 NOL7Q9UMY1 257 aaKnown RBP14.16□□□□□ -0.14
SNIP1-201ENST00000296215 BIRC2Q13490 618 aa14.15□□□□□ -0.14
SNIP1-201ENST00000296215 AP1ARQ63HQ0 302 aa14.15□□□□□ -0.14
SNIP1-201ENST00000296215 RTF1Q92541 710 aaKnown RBP14.15□□□□□ -0.14
SNIP1-201ENST00000296215 PRPF40AO75400 957 aaKnown RBP14.15□□□□□ -0.14
SNIP1-201ENST00000296215 MBD3O95983 291 aa14.15□□□□□ -0.14
SNIP1-201ENST00000296215 BRMS1Q9HCU9 246 aa14.15□□□□□ -0.14
SNIP1-201ENST00000296215 TERF2IPQ9NYB0 399 aa14.15□□□□□ -0.14
SNIP1-201ENST00000296215 RIPK4P57078 832 aa14.15□□□□□ -0.14
SNIP1-201ENST00000296215 NOLC1Q14978 699 aaKnown RBP eCLIP14.15□□□□□ -0.14
SNIP1-201ENST00000296215 LMAN1P49257 510 aa14.14□□□□□ -0.15
SNIP1-201ENST00000296215 RABEP1Q15276 862 aa14.14□□□□□ -0.15
SNIP1-201ENST00000296215 SPC24Q8NBT2 197 aa14.14□□□□□ -0.15
SNIP1-201ENST00000296215 NINLQ9Y2I6 1382 aa14.14□□□□□ -0.15
SNIP1-201ENST00000296215 SATB1Q01826 763 aa14.14□□□□□ -0.15
SNIP1-201ENST00000296215 GBP6Q6ZN66 633 aa14.14□□□□□ -0.15
SNIP1-201ENST00000296215 ZSCAN20P17040 1043 aaPredicted RBP14.13□□□□□ -0.15
SNIP1-201ENST00000296215 NAP1L1P55209 391 aaKnown RBP14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms