RNA–Protein interactions for RNA: ENST00000294489.10

PDPN-201, Transcript of podoplanin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDPN, Length 3,104 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-201ENST00000294489 NEXMIFQ5QGS0 1516 aa12.77□□□□□ -0.36
PDPN-201ENST00000294489 ZNF326Q5BKZ1 582 aaKnown RBP12.77□□□□□ -0.37
PDPN-201ENST00000294489 CARD11Q9BXL7 1154 aa12.77□□□□□ -0.37
PDPN-201ENST00000294489 RPGRIP1LQ68CZ1 1315 aa12.76□□□□□ -0.37
PDPN-201ENST00000294489 KIF7Q2M1P5 1343 aa12.76□□□□□ -0.37
PDPN-201ENST00000294489 MYO3AQ8NEV4 1616 aa12.75□□□□□ -0.37
PDPN-201ENST00000294489 DNAJC5Q9H3Z4 198 aa12.75□□□□□ -0.37
PDPN-201ENST00000294489 ZFYVE9O95405 1425 aa12.74□□□□□ -0.37
PDPN-201ENST00000294489 KDM5AP29375 1690 aaKnown RBP12.74□□□□□ -0.37
PDPN-201ENST00000294489 NBPF1Q3BBV0 1214 aa12.74□□□□□ -0.37
PDPN-201ENST00000294489 PIK3C2GO75747 1445 aa12.74□□□□□ -0.37
PDPN-201ENST00000294489 CCER2I3L3R5 266 aa12.73□□□□□ -0.37
PDPN-201ENST00000294489 SLC52A1Q9NWF4 448 aa12.73□□□□□ -0.37
PDPN-201ENST00000294489 SCAF11Q99590 1463 aaKnown RBP12.72□□□□□ -0.37
PDPN-201ENST00000294489 ADGRB1O14514 1584 aa12.71□□□□□ -0.37
PDPN-201ENST00000294489 GTF3C3Q9Y5Q9 886 aa12.71□□□□□ -0.37
PDPN-201ENST00000294489 ST20-MTHFSA0A0A6YYL1 179 aa12.7□□□□□ -0.38
PDPN-201ENST00000294489 TESK2Q96S53 571 aa12.7□□□□□ -0.38
PDPN-201ENST00000294489 ADGRF5Q8IZF2 1346 aa12.7□□□□□ -0.38
PDPN-201ENST00000294489 IDI1Q13907 227 aa12.68□□□□□ -0.38
PDPN-201ENST00000294489 ZMYM3Q14202 1370 aa12.66□□□□□ -0.38
PDPN-201ENST00000294489 FER1L4A9Z1Z3 1794 aa12.66□□□□□ -0.38
PDPN-201ENST00000294489 SETD1AO15047 1707 aaKnown RBP12.66□□□□□ -0.38
PDPN-201ENST00000294489 C14orf93Q9H972 538 aaKnown RBP12.66□□□□□ -0.38
PDPN-201ENST00000294489 A2ML1A8K2U0 1454 aa12.65□□□□□ -0.38
PDPN-201ENST00000294489 C3P01024 1663 aa12.65□□□□□ -0.38
PDPN-201ENST00000294489 FBXO31Q5XUX0 539 aaPredicted RBP12.65□□□□□ -0.38
PDPN-201ENST00000294489 ARHGEF28Q8N1W1 1705 aaKnown RBP12.64□□□□□ -0.39
PDPN-201ENST00000294489 MYOM1P52179 1685 aa12.64□□□□□ -0.39
PDPN-201ENST00000294489 UBR1Q8IWV7 1749 aa12.64□□□□□ -0.39
PDPN-201ENST00000294489 PELP1Q8IZL8 1130 aaKnown RBP12.64□□□□□ -0.39
PDPN-201ENST00000294489 EIF3AQ14152 1382 aaKnown RBP12.64□□□□□ -0.39
PDPN-201ENST00000294489 DISP3Q9P2K9 1392 aa12.64□□□□□ -0.39
PDPN-201ENST00000294489 SBNO2Q9Y2G9 1366 aa12.64□□□□□ -0.39
PDPN-201ENST00000294489 ASXL1Q8IXJ9 1541 aa12.63□□□□□ -0.39
PDPN-201ENST00000294489 QRICH2Q9H0J4 1663 aa12.63□□□□□ -0.39
PDPN-201ENST00000294489 CFAP70Q5T0N1 1121 aa12.63□□□□□ -0.39
PDPN-201ENST00000294489 VGFO15240 615 aaPredicted RBP12.62□□□□□ -0.39
PDPN-201ENST00000294489 NRXN3Q9Y4C0 1643 aa12.61□□□□□ -0.39
PDPN-201ENST00000294489 TRHP20396 242 aaPredicted RBP12.6□□□□□ -0.39
PDPN-201ENST00000294489 ALKQ9UM73 1620 aa12.6□□□□□ -0.39
PDPN-201ENST00000294489 CHGAP10645 457 aaKnown RBP12.6□□□□□ -0.39
PDPN-201ENST00000294489 POLR3GLQ9BT43 218 aa12.6□□□□□ -0.39
PDPN-201ENST00000294489 SLC24A1O60721 1099 aa12.59□□□□□ -0.39
PDPN-201ENST00000294489 NLRP1Q9C000 1473 aa12.59□□□□□ -0.39
PDPN-201ENST00000294489 MYT1Q01538 1121 aa12.59□□□□□ -0.39
PDPN-201ENST00000294489 PRKRIP1Q9H875 184 aaPredicted RBP12.59□□□□□ -0.39
PDPN-201ENST00000294489 TNRQ92752 1358 aa12.58□□□□□ -0.4
PDPN-201ENST00000294489 TMF1P82094 1093 aa12.58□□□□□ -0.4
PDPN-201ENST00000294489 MLECQ14165 292 aa12.58□□□□□ -0.4
PDPN-201ENST00000294489 ADAMTSL3P82987 1691 aa12.57□□□□□ -0.4
PDPN-201ENST00000294489 KTN1Q86UP2 1357 aaKnown RBP12.57□□□□□ -0.4
PDPN-201ENST00000294489 RIMS2Q9UQ26 1411 aa12.57□□□□□ -0.4
PDPN-201ENST00000294489 KNDC1Q76NI1 1749 aa12.56□□□□□ -0.4
PDPN-201ENST00000294489 DLC1Q96QB1 1528 aa12.56□□□□□ -0.4
PDPN-201ENST00000294489 PTPRMP28827 1452 aa12.56□□□□□ -0.4
PDPN-201ENST00000294489 PER1O15534 1290 aaPredicted RBP12.55□□□□□ -0.4
PDPN-201ENST00000294489 AEBP2Q6ZN18 517 aaPredicted RBP12.55□□□□□ -0.4
PDPN-201ENST00000294489 ESF1Q9H501 851 aaKnown RBP12.55□□□□□ -0.4
PDPN-201ENST00000294489 CDCA8Q53HL2 280 aa12.54□□□□□ -0.4
PDPN-201ENST00000294489 SLIT1O75093 1534 aa12.53□□□□□ -0.4
PDPN-201ENST00000294489 ARHGAP23Q9P227 1491 aa12.52□□□□□ -0.4
PDPN-201ENST00000294489 PUS7Q96PZ0 661 aaKnown RBP12.52□□□□□ -0.4
PDPN-201ENST00000294489 CENPJQ9HC77 1338 aaPredicted RBP12.52□□□□□ -0.41
PDPN-201ENST00000294489 ZNF142P52746 1687 aaPredicted RBP12.52□□□□□ -0.41
PDPN-201ENST00000294489 RIMS1Q86UR5 1692 aaKnown RBP12.52□□□□□ -0.41
PDPN-201ENST00000294489 TULP4Q9NRJ4 1543 aa12.52□□□□□ -0.41
PDPN-201ENST00000294489 PARD3Q8TEW0 1356 aa12.51□□□□□ -0.41
PDPN-201ENST00000294489 YTHDC2Q9H6S0 1430 aaKnown RBP12.51□□□□□ -0.41
PDPN-201ENST00000294489 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.51□□□□□ -0.41
PDPN-201ENST00000294489 MRS2Q9HD23 443 aa12.51□□□□□ -0.41
PDPN-201ENST00000294489 TMEM2Q9UHN6 1383 aa12.5□□□□□ -0.41
PDPN-201ENST00000294489 USP32Q8NFA0 1604 aa12.5□□□□□ -0.41
PDPN-201ENST00000294489 TMEM132EQ6IEE7 984 aa12.49□□□□□ -0.41
PDPN-201ENST00000294489 NPC1L1Q9UHC9 1359 aa12.49□□□□□ -0.41
PDPN-201ENST00000294489 MED14O60244 1454 aa12.48□□□□□ -0.41
PDPN-201ENST00000294489 RALBP1Q15311 655 aa12.48□□□□□ -0.41
PDPN-201ENST00000294489 NUTM2DQ5VT03 806 aaPredicted RBP12.48□□□□□ -0.41
PDPN-201ENST00000294489 CPS1P31327 1500 aa12.48□□□□□ -0.41
PDPN-201ENST00000294489 TECPR2O15040 1411 aa12.48□□□□□ -0.41
PDPN-201ENST00000294489 LRPPRCP42704 1394 aaKnown RBP12.48□□□□□ -0.41
PDPN-201ENST00000294489 HNRNPUQ00839 825 aaKnown RBP eCLIP12.48□□□□□ -0.41
PDPN-201ENST00000294489 STAG3Q9UJ98 1225 aa12.47□□□□□ -0.41
PDPN-201ENST00000294489 PANK3Q9H999 370 aa12.47□□□□□ -0.41
PDPN-201ENST00000294489 TRAK1Q9UPV9 953 aa12.47□□□□□ -0.41
PDPN-201ENST00000294489 CCDC184Q52MB2 194 aa12.46□□□□□ -0.41
PDPN-201ENST00000294489 ABCC11Q96J66 1382 aa12.46□□□□□ -0.41
PDPN-201ENST00000294489 PLEKHG1Q9ULL1 1385 aa12.46□□□□□ -0.41
PDPN-201ENST00000294489 DIP2AQ14689 1571 aa12.46□□□□□ -0.42
PDPN-201ENST00000294489 CEP170BQ9Y4F5 1589 aaPredicted RBP12.46□□□□□ -0.42
PDPN-201ENST00000294489 HDGFP51858 240 aaKnown RBP12.46□□□□□ -0.42
PDPN-201ENST00000294489 ADAMTS13Q76LX8 1427 aa12.45□□□□□ -0.42
PDPN-201ENST00000294489 BRD4O60885 1362 aaPredicted RBP12.45□□□□□ -0.42
PDPN-201ENST00000294489 CNGB1Q14028 1251 aaPredicted RBP12.45□□□□□ -0.42
PDPN-201ENST00000294489 FAM9BQ8IZU0 186 aa12.45□□□□□ -0.42
PDPN-201ENST00000294489 MYBBP1AQ9BQG0 1328 aaKnown RBP12.45□□□□□ -0.42
PDPN-201ENST00000294489 SIRT1Q96EB6 747 aa12.44□□□□□ -0.42
PDPN-201ENST00000294489 CEBPAP49715 358 aaPredicted RBP12.44□□□□□ -0.42
PDPN-201ENST00000294489 FAM135BQ49AJ0 1406 aa12.43□□□□□ -0.42
PDPN-201ENST00000294489 AMER1Q5JTC6 1135 aaPredicted RBP12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms