RNA–Protein interactions for RNA: ENST00000284767.9

PDLIM3-201, Transcript of PDZ and LIM domain 3, humanhuman

TSL 5 BASIC

Gene PDLIM3, Length 2,589 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-201ENST00000284767 MRS2Q9HD23 443 aa24.84■■□□□ 1.57
PDLIM3-201ENST00000284767 KIF1BO60333 1816 aa24.82■■□□□ 1.56
PDLIM3-201ENST00000284767 FAM9BQ8IZU0 186 aa24.82■■□□□ 1.56
PDLIM3-201ENST00000284767 ZBED9Q6R2W3 1325 aa24.81■■□□□ 1.56
PDLIM3-201ENST00000284767 CFAP70Q5T0N1 1121 aa24.81■■□□□ 1.56
PDLIM3-201ENST00000284767 SIGLEC1Q9BZZ2 1709 aa24.79■■□□□ 1.56
PDLIM3-201ENST00000284767 CAMSAP1Q5T5Y3 1602 aa24.79■■□□□ 1.56
PDLIM3-201ENST00000284767 COL17A1Q9UMD9 1497 aaPredicted RBP24.78■■□□□ 1.56
PDLIM3-201ENST00000284767 NOS1P29475 1434 aa24.75■■□□□ 1.55
PDLIM3-201ENST00000284767 STAC3Q96MF2 364 aa24.74■■□□□ 1.55
PDLIM3-201ENST00000284767 IQGAP1P46940 1657 aa24.74■■□□□ 1.55
PDLIM3-201ENST00000284767 NEURL4Q96JN8 1562 aa24.74■■□□□ 1.55
PDLIM3-201ENST00000284767 ADGRB3O60242 1522 aa24.74■■□□□ 1.55
PDLIM3-201ENST00000284767 ERICH6Q7L0X2 663 aa24.74■■□□□ 1.55
PDLIM3-201ENST00000284767 NUTM2DQ5VT03 806 aaPredicted RBP24.73■■□□□ 1.55
PDLIM3-201ENST00000284767 TMF1P82094 1093 aa24.73■■□□□ 1.55
PDLIM3-201ENST00000284767 ZMYM4Q5VZL5 1548 aa24.73■■□□□ 1.55
PDLIM3-201ENST00000284767 IFT172Q9UG01 1749 aa24.72■■□□□ 1.55
PDLIM3-201ENST00000284767 MYOM2P54296 1465 aa24.72■■□□□ 1.55
PDLIM3-201ENST00000284767 SCAF11Q99590 1463 aaKnown RBP24.71■■□□□ 1.55
PDLIM3-201ENST00000284767 KIF13AQ9H1H9 1805 aa24.71■■□□□ 1.55
PDLIM3-201ENST00000284767 SYNMO15061 1565 aa24.7■■□□□ 1.54
PDLIM3-201ENST00000284767 SENP3Q9H4L4 574 aaPredicted RBP24.69■■□□□ 1.54
PDLIM3-201ENST00000284767 PANK3Q9H999 370 aa24.67■■□□□ 1.54
PDLIM3-201ENST00000284767 PER1O15534 1290 aaPredicted RBP24.66■■□□□ 1.54
PDLIM3-201ENST00000284767 IDI1Q13907 227 aa24.66■■□□□ 1.54
PDLIM3-201ENST00000284767 FBXO31Q5XUX0 539 aaPredicted RBP24.66■■□□□ 1.54
PDLIM3-201ENST00000284767 MLECQ14165 292 aa24.65■■□□□ 1.54
PDLIM3-201ENST00000284767 KIAA1210Q9ULL0 1709 aa24.64■■□□□ 1.54
PDLIM3-201ENST00000284767 NRXN1Q9ULB1 1477 aa24.64■■□□□ 1.54
PDLIM3-201ENST00000284767 SENP3-EIF4A1A0A087X0R7 540 aa24.64■■□□□ 1.53
PDLIM3-201ENST00000284767 ARHGAP31Q2M1Z3 1444 aa24.63■■□□□ 1.53
PDLIM3-201ENST00000284767 PPLO60437 1756 aa24.63■■□□□ 1.53
PDLIM3-201ENST00000284767 ZC3H13Q5T200 1668 aaKnown RBP24.62■■□□□ 1.53
PDLIM3-201ENST00000284767 PIK3C2BO00750 1634 aa24.62■■□□□ 1.53
PDLIM3-201ENST00000284767 CC2D1BQ5T0F9 858 aaKnown RBP24.61■■□□□ 1.53
PDLIM3-201ENST00000284767 TMEM132EQ6IEE7 984 aa24.61■■□□□ 1.53
PDLIM3-201ENST00000284767 SMG6Q86US8 1419 aaKnown RBP24.61■■□□□ 1.53
PDLIM3-201ENST00000284767 B4GALNT3Q6L9W6 998 aa24.6■■□□□ 1.53
PDLIM3-201ENST00000284767 PIK3C2GO75747 1445 aa24.59■■□□□ 1.53
PDLIM3-201ENST00000284767 TMC1Q8TDI8 760 aa24.58■■□□□ 1.53
PDLIM3-201ENST00000284767 EIF3AQ14152 1382 aaKnown RBP24.58■■□□□ 1.53
PDLIM3-201ENST00000284767 TRAK1Q9UPV9 953 aa24.58■■□□□ 1.53
PDLIM3-201ENST00000284767 MYBBP1AQ9BQG0 1328 aaKnown RBP24.57■■□□□ 1.52
PDLIM3-201ENST00000284767 PREX1Q8TCU6 1659 aa24.56■■□□□ 1.52
PDLIM3-201ENST00000284767 RALBP1Q15311 655 aa24.56■■□□□ 1.52
PDLIM3-201ENST00000284767 C14orf93Q9H972 538 aaKnown RBP24.56■■□□□ 1.52
PDLIM3-201ENST00000284767 KTN1Q86UP2 1357 aaKnown RBP24.56■■□□□ 1.52
PDLIM3-201ENST00000284767 PNISRQ8TF01 805 aaKnown RBP24.54■■□□□ 1.52
PDLIM3-201ENST00000284767 RPGRIP1LQ68CZ1 1315 aa24.54■■□□□ 1.52
PDLIM3-201ENST00000284767 NEXMIFQ5QGS0 1516 aa24.54■■□□□ 1.52
PDLIM3-201ENST00000284767 PARD3Q8TEW0 1356 aa24.54■■□□□ 1.52
PDLIM3-201ENST00000284767 MYO5BQ9ULV0 1848 aa24.53■■□□□ 1.52
PDLIM3-201ENST00000284767 SLC52A1Q9NWF4 448 aa24.53■■□□□ 1.52
PDLIM3-201ENST00000284767 RNF123Q5XPI4 1314 aa24.5■■□□□ 1.51
PDLIM3-201ENST00000284767 ERVK-7P63135 1459 aa24.5■■□□□ 1.51
PDLIM3-201ENST00000284767 ADGRB1O14514 1584 aa24.5■■□□□ 1.51
PDLIM3-201ENST00000284767 REREQ9P2R6 1566 aa24.5■■□□□ 1.51
PDLIM3-201ENST00000284767 CLTCQ00610 1675 aaKnown RBP24.5■■□□□ 1.51
PDLIM3-201ENST00000284767 AGLP35573 1532 aa24.5■■□□□ 1.51
PDLIM3-201ENST00000284767 VGFO15240 615 aaPredicted RBP24.49■■□□□ 1.51
PDLIM3-201ENST00000284767 NUDCQ9Y266 331 aa24.49■■□□□ 1.51
PDLIM3-201ENST00000284767 CDCA8Q53HL2 280 aa24.48■■□□□ 1.51
PDLIM3-201ENST00000284767 ARHGEF40Q8TER5 1519 aa24.48■■□□□ 1.51
PDLIM3-201ENST00000284767 BRD4O60885 1362 aaPredicted RBP24.48■■□□□ 1.51
PDLIM3-201ENST00000284767 CENPJQ9HC77 1338 aaPredicted RBP24.48■■□□□ 1.51
PDLIM3-201ENST00000284767 SETBP1Q9Y6X0 1596 aa24.47■■□□□ 1.51
PDLIM3-201ENST00000284767 MYOM1P52179 1685 aa24.47■■□□□ 1.51
PDLIM3-201ENST00000284767 TMEM131LA2VDJ0 1609 aa24.46■■□□□ 1.51
PDLIM3-201ENST00000284767 NLRP13Q86W25 1043 aa24.46■■□□□ 1.51
PDLIM3-201ENST00000284767 KNSTRNQ9Y448 316 aa24.45■■□□□ 1.5
PDLIM3-201ENST00000284767 KDM5AP29375 1690 aaKnown RBP24.44■■□□□ 1.5
PDLIM3-201ENST00000284767 STAG3Q9UJ98 1225 aa24.43■■□□□ 1.5
PDLIM3-201ENST00000284767 MYO3AQ8NEV4 1616 aa24.42■■□□□ 1.5
PDLIM3-201ENST00000284767 AMER1Q5JTC6 1135 aaPredicted RBP24.41■■□□□ 1.5
PDLIM3-201ENST00000284767 NOP58Q9Y2X3 529 aaKnown RBP24.41■■□□□ 1.5
PDLIM3-201ENST00000284767 SAFB2Q14151 953 aaKnown RBP eCLIP24.41■■□□□ 1.5
PDLIM3-201ENST00000284767 STK26Q9P289 416 aa24.41■■□□□ 1.5
PDLIM3-201ENST00000284767 LRPPRCP42704 1394 aaKnown RBP24.39■■□□□ 1.5
PDLIM3-201ENST00000284767 PPP6R1Q9UPN7 881 aa24.39■■□□□ 1.5
PDLIM3-201ENST00000284767 QRICH2Q9H0J4 1663 aa24.38■■□□□ 1.49
PDLIM3-201ENST00000284767 SBNO2Q9Y2G9 1366 aa24.37■■□□□ 1.49
PDLIM3-201ENST00000284767 CCDC136Q96JN2 1154 aa24.37■■□□□ 1.49
PDLIM3-201ENST00000284767 CARD14Q9BXL6 1004 aa24.36■■□□□ 1.49
PDLIM3-201ENST00000284767 ESF1Q9H501 851 aaKnown RBP24.36■■□□□ 1.49
PDLIM3-201ENST00000284767 ASXL1Q8IXJ9 1541 aa24.35■■□□□ 1.49
PDLIM3-201ENST00000284767 ZFYVE9O95405 1425 aa24.34■■□□□ 1.49
PDLIM3-201ENST00000284767 SALL2Q9Y467 1007 aaPredicted RBP24.34■■□□□ 1.49
PDLIM3-201ENST00000284767 SPATA31D1Q6ZQQ2 1576 aa24.33■■□□□ 1.49
PDLIM3-201ENST00000284767 ZMYM3Q14202 1370 aa24.33■■□□□ 1.49
PDLIM3-201ENST00000284767 SLC12A5Q9H2X9 1139 aa24.33■■□□□ 1.48
PDLIM3-201ENST00000284767 ARHGEF28Q8N1W1 1705 aaKnown RBP24.32■■□□□ 1.48
PDLIM3-201ENST00000284767 SLC24A1O60721 1099 aa24.32■■□□□ 1.48
PDLIM3-201ENST00000284767 PPP2R1AP30153 589 aa24.31■■□□□ 1.48
PDLIM3-201ENST00000284767 A2ML1A8K2U0 1454 aa24.31■■□□□ 1.48
PDLIM3-201ENST00000284767 DEKP35659 375 aaKnown RBP24.3■■□□□ 1.48
PDLIM3-201ENST00000284767 TRHP20396 242 aaPredicted RBP24.29■■□□□ 1.48
PDLIM3-201ENST00000284767 ANP32AP39687 249 aaKnown RBP24.29■■□□□ 1.48
PDLIM3-201ENST00000284767 CABP2Q9NPB3 220 aa24.27■■□□□ 1.48
PDLIM3-201ENST00000284767 TULP4Q9NRJ4 1543 aa24.26■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms