RNA–Protein interactions for RNA: ENST00000279550.11

YBX3-202, Transcript of Y-box binding protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene YBX3, Length 1,708 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-202ENST00000279550 CEBPAP49715 358 aaPredicted RBP29.28■■■□□ 2.28
YBX3-202ENST00000279550 TMEM131LA2VDJ0 1609 aa29.26■■■□□ 2.28
YBX3-202ENST00000279550 ANP32CO43423 234 aa29.26■■■□□ 2.27
YBX3-202ENST00000279550 TRPM1Q7Z4N2 1603 aa29.25■■■□□ 2.27
YBX3-202ENST00000279550 IFT172Q9UG01 1749 aa29.24■■■□□ 2.27
YBX3-202ENST00000279550 KIF7Q2M1P5 1343 aa29.24■■■□□ 2.27
YBX3-202ENST00000279550 MYOM2P54296 1465 aa29.24■■■□□ 2.27
YBX3-202ENST00000279550 RIMS1Q86UR5 1692 aaKnown RBP29.23■■■□□ 2.27
YBX3-202ENST00000279550 RPGRIP1LQ68CZ1 1315 aa29.23■■■□□ 2.27
YBX3-202ENST00000279550 CARD11Q9BXL7 1154 aa29.21■■■□□ 2.27
YBX3-202ENST00000279550 PPLO60437 1756 aa29.19■■■□□ 2.26
YBX3-202ENST00000279550 STAG3Q9UJ98 1225 aa29.19■■■□□ 2.26
YBX3-202ENST00000279550 MYO5BQ9ULV0 1848 aa29.18■■■□□ 2.26
YBX3-202ENST00000279550 NEXMIFQ5QGS0 1516 aa29.17■■■□□ 2.26
YBX3-202ENST00000279550 CCER2I3L3R5 266 aa29.17■■■□□ 2.26
YBX3-202ENST00000279550 A2ML1A8K2U0 1454 aa29.17■■■□□ 2.26
YBX3-202ENST00000279550 PLPPR3Q6T4P5 718 aa29.17■■■□□ 2.26
YBX3-202ENST00000279550 ADGRF5Q8IZF2 1346 aa29.16■■■□□ 2.26
YBX3-202ENST00000279550 NLRP1Q9C000 1473 aa29.16■■■□□ 2.26
YBX3-202ENST00000279550 NRXN1Q9ULB1 1477 aa29.16■■■□□ 2.26
YBX3-202ENST00000279550 ROCK2O75116 1388 aaKnown RBP29.16■■■□□ 2.26
YBX3-202ENST00000279550 NBPF1Q3BBV0 1214 aa29.11■■■□□ 2.25
YBX3-202ENST00000279550 KDM5AP29375 1690 aaKnown RBP29.11■■■□□ 2.25
YBX3-202ENST00000279550 GPRASP1Q5JY77 1395 aa29.11■■■□□ 2.25
YBX3-202ENST00000279550 VGFO15240 615 aaPredicted RBP29.11■■■□□ 2.25
YBX3-202ENST00000279550 LAMC1P11047 1609 aa29.1■■■□□ 2.25
YBX3-202ENST00000279550 ZFYVE9O95405 1425 aa29.09■■■□□ 2.25
YBX3-202ENST00000279550 PIK3C2GO75747 1445 aa29.09■■■□□ 2.25
YBX3-202ENST00000279550 ST20-MTHFSA0A0A6YYL1 179 aa29.07■■■□□ 2.24
YBX3-202ENST00000279550 NUTM2DQ5VT03 806 aaPredicted RBP29.07■■■□□ 2.24
YBX3-202ENST00000279550 UBR1Q8IWV7 1749 aa29.07■■■□□ 2.24
YBX3-202ENST00000279550 KIAA1210Q9ULL0 1709 aa29.06■■■□□ 2.24
YBX3-202ENST00000279550 GTF3C3Q9Y5Q9 886 aa29.06■■■□□ 2.24
YBX3-202ENST00000279550 PTPRMP28827 1452 aa29.04■■■□□ 2.24
YBX3-202ENST00000279550 MYO3AQ8NEV4 1616 aa29.04■■■□□ 2.24
YBX3-202ENST00000279550 RIMS2Q9UQ26 1411 aa29.03■■■□□ 2.24
YBX3-202ENST00000279550 CFAP70Q5T0N1 1121 aa29.02■■■□□ 2.24
YBX3-202ENST00000279550 TMEM2Q9UHN6 1383 aa28.99■■■□□ 2.23
YBX3-202ENST00000279550 POLR3GLQ9BT43 218 aa28.99■■■□□ 2.23
YBX3-202ENST00000279550 C14orf93Q9H972 538 aaKnown RBP28.99■■■□□ 2.23
YBX3-202ENST00000279550 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.97■■■□□ 2.23
YBX3-202ENST00000279550 CEP170BQ9Y4F5 1589 aaPredicted RBP28.96■■■□□ 2.23
YBX3-202ENST00000279550 HDGFP51858 240 aaKnown RBP28.95■■■□□ 2.23
YBX3-202ENST00000279550 SETBP1Q9Y6X0 1596 aa28.94■■■□□ 2.22
YBX3-202ENST00000279550 PRKRIP1Q9H875 184 aaPredicted RBP28.94■■■□□ 2.22
YBX3-202ENST00000279550 THEMISQ8N1K5 641 aaPredicted RBP28.92■■■□□ 2.22
YBX3-202ENST00000279550 SETD1BQ9UPS6 1966 aaKnown RBP28.92■■■□□ 2.22
YBX3-202ENST00000279550 SLIT1O75093 1534 aa28.91■■■□□ 2.22
YBX3-202ENST00000279550 SCAF11Q99590 1463 aaKnown RBP28.91■■■□□ 2.22
YBX3-202ENST00000279550 ZNF142P52746 1687 aaPredicted RBP28.9■■■□□ 2.22
YBX3-202ENST00000279550 ADGRB1O14514 1584 aa28.9■■■□□ 2.22
YBX3-202ENST00000279550 ARHGAP23Q9P227 1491 aa28.9■■■□□ 2.22
YBX3-202ENST00000279550 IQGAP1P46940 1657 aa28.9■■■□□ 2.22
YBX3-202ENST00000279550 KDM4FA0A1W2PPD8 638 aa28.87■■■□□ 2.21
YBX3-202ENST00000279550 CCDC184Q52MB2 194 aa28.87■■■□□ 2.21
YBX3-202ENST00000279550 TESK2Q96S53 571 aa28.87■■■□□ 2.21
YBX3-202ENST00000279550 SENP3Q9H4L4 574 aaPredicted RBP28.87■■■□□ 2.21
YBX3-202ENST00000279550 ALKQ9UM73 1620 aa28.86■■■□□ 2.21
YBX3-202ENST00000279550 LTKP29376 864 aa28.85■■■□□ 2.21
YBX3-202ENST00000279550 TMEM132EQ6IEE7 984 aa28.85■■■□□ 2.21
YBX3-202ENST00000279550 EID1Q9Y6B2 187 aa28.84■■■□□ 2.21
YBX3-202ENST00000279550 TXNDC2Q86VQ3 553 aa28.83■■■□□ 2.21
YBX3-202ENST00000279550 DISP3Q9P2K9 1392 aa28.83■■■□□ 2.21
YBX3-202ENST00000279550 EIF3AQ14152 1382 aaKnown RBP28.82■■■□□ 2.2
YBX3-202ENST00000279550 NRXN3Q9Y4C0 1643 aa28.82■■■□□ 2.2
YBX3-202ENST00000279550 ASXL1Q8IXJ9 1541 aa28.82■■■□□ 2.2
YBX3-202ENST00000279550 PLEKHG1Q9ULL1 1385 aa28.81■■■□□ 2.2
YBX3-202ENST00000279550 SETD1AO15047 1707 aaKnown RBP28.77■■■□□ 2.2
YBX3-202ENST00000279550 TRAK1Q9UPV9 953 aa28.76■■■□□ 2.19
YBX3-202ENST00000279550 BCANQ96GW7 911 aa28.74■■■□□ 2.19
YBX3-202ENST00000279550 CNGB1Q14028 1251 aaPredicted RBP28.72■■■□□ 2.19
YBX3-202ENST00000279550 ADAMTS13Q76LX8 1427 aa28.72■■■□□ 2.19
YBX3-202ENST00000279550 YTHDC2Q9H6S0 1430 aaKnown RBP28.72■■■□□ 2.19
YBX3-202ENST00000279550 MRS2Q9HD23 443 aa28.7■■■□□ 2.19
YBX3-202ENST00000279550 METP08581 1390 aa28.7■■■□□ 2.18
YBX3-202ENST00000279550 TMF1P82094 1093 aa28.69■■■□□ 2.18
YBX3-202ENST00000279550 ANKLE2Q86XL3 938 aa28.69■■■□□ 2.18
YBX3-202ENST00000279550 STK26Q9P289 416 aa28.69■■■□□ 2.18
YBX3-202ENST00000279550 MED14O60244 1454 aa28.68■■■□□ 2.18
YBX3-202ENST00000279550 CENPJQ9HC77 1338 aaPredicted RBP28.68■■■□□ 2.18
YBX3-202ENST00000279550 ARHGEF28Q8N1W1 1705 aaKnown RBP28.68■■■□□ 2.18
YBX3-202ENST00000279550 LRPPRCP42704 1394 aaKnown RBP28.66■■■□□ 2.18
YBX3-202ENST00000279550 SBNO2Q9Y2G9 1366 aa28.65■■■□□ 2.18
YBX3-202ENST00000279550 SLC26A8Q96RN1 970 aa28.64■■■□□ 2.18
YBX3-202ENST00000279550 SLC24A1O60721 1099 aa28.63■■■□□ 2.17
YBX3-202ENST00000279550 DIP2AQ14689 1571 aa28.62■■■□□ 2.17
YBX3-202ENST00000279550 ABCC11Q96J66 1382 aa28.62■■■□□ 2.17
YBX3-202ENST00000279550 TBX22Q9Y458 520 aa28.62■■■□□ 2.17
YBX3-202ENST00000279550 HNRNPUQ00839 825 aaKnown RBP eCLIP28.61■■■□□ 2.17
YBX3-202ENST00000279550 QRICH2Q9H0J4 1663 aa28.61■■■□□ 2.17
YBX3-202ENST00000279550 DLC1Q96QB1 1528 aa28.6■■■□□ 2.17
YBX3-202ENST00000279550 PER1O15534 1290 aaPredicted RBP28.59■■■□□ 2.17
YBX3-202ENST00000279550 FAM9BQ8IZU0 186 aa28.59■■■□□ 2.17
YBX3-202ENST00000279550 PRAM1Q96QH2 718 aa28.57■■■□□ 2.16
YBX3-202ENST00000279550 TECPR2O15040 1411 aa28.57■■■□□ 2.16
YBX3-202ENST00000279550 PANK3Q9H999 370 aa28.55■■■□□ 2.16
YBX3-202ENST00000279550 KNDC1Q76NI1 1749 aa28.55■■■□□ 2.16
YBX3-202ENST00000279550 CDCA8Q53HL2 280 aa28.55■■■□□ 2.16
YBX3-202ENST00000279550 POGKQ9P215 609 aa28.54■■■□□ 2.16
YBX3-202ENST00000279550 NPHP4O75161 1426 aaPredicted RBP28.54■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms