RNA–Protein interactions for RNA: ENST00000276573.11

TRIM55-201, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 1,960 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-201ENST00000276573 IFT172Q9UG01 1749 aa13.13□□□□□ -0.31
TRIM55-201ENST00000276573 ZC3H13Q5T200 1668 aaKnown RBP13.13□□□□□ -0.31
TRIM55-201ENST00000276573 NRXN1Q9ULB1 1477 aa13.13□□□□□ -0.31
TRIM55-201ENST00000276573 PER1O15534 1290 aaPredicted RBP13.12□□□□□ -0.31
TRIM55-201ENST00000276573 SIGLEC1Q9BZZ2 1709 aa13.12□□□□□ -0.31
TRIM55-201ENST00000276573 CNGB1Q14028 1251 aaPredicted RBP13.11□□□□□ -0.31
TRIM55-201ENST00000276573 PPP6R1Q9UPN7 881 aa13.11□□□□□ -0.31
TRIM55-201ENST00000276573 KIF13AQ9H1H9 1805 aa13.11□□□□□ -0.31
TRIM55-201ENST00000276573 REREQ9P2R6 1566 aa13.11□□□□□ -0.31
TRIM55-201ENST00000276573 HNRNPUQ00839 825 aaKnown RBP eCLIP13.11□□□□□ -0.31
TRIM55-201ENST00000276573 SLC52A1Q9NWF4 448 aa13.11□□□□□ -0.31
TRIM55-201ENST00000276573 IDI1Q13907 227 aa13.1□□□□□ -0.31
TRIM55-201ENST00000276573 RALBP1Q15311 655 aa13.1□□□□□ -0.31
TRIM55-201ENST00000276573 FAM9BQ8IZU0 186 aa13.1□□□□□ -0.31
TRIM55-201ENST00000276573 KTN1Q86UP2 1357 aaKnown RBP13.1□□□□□ -0.31
TRIM55-201ENST00000276573 SYNMO15061 1565 aa13.1□□□□□ -0.31
TRIM55-201ENST00000276573 AGLP35573 1532 aa13.09□□□□□ -0.31
TRIM55-201ENST00000276573 PIK3C2BO00750 1634 aa13.09□□□□□ -0.31
TRIM55-201ENST00000276573 C14orf93Q9H972 538 aaKnown RBP13.09□□□□□ -0.31
TRIM55-201ENST00000276573 EIF3AQ14152 1382 aaKnown RBP13.09□□□□□ -0.31
TRIM55-201ENST00000276573 SLC24A1O60721 1099 aa13.09□□□□□ -0.31
TRIM55-201ENST00000276573 CDCA8Q53HL2 280 aa13.09□□□□□ -0.31
TRIM55-201ENST00000276573 PANK3Q9H999 370 aa13.09□□□□□ -0.31
TRIM55-201ENST00000276573 PPLO60437 1756 aa13.08□□□□□ -0.32
TRIM55-201ENST00000276573 VGFO15240 615 aaPredicted RBP13.07□□□□□ -0.32
TRIM55-201ENST00000276573 PIK3C2GO75747 1445 aa13.06□□□□□ -0.32
TRIM55-201ENST00000276573 FBXO31Q5XUX0 539 aaPredicted RBP13.05□□□□□ -0.32
TRIM55-201ENST00000276573 MYBBP1AQ9BQG0 1328 aaKnown RBP13.05□□□□□ -0.32
TRIM55-201ENST00000276573 SETBP1Q9Y6X0 1596 aa13.05□□□□□ -0.32
TRIM55-201ENST00000276573 TMC1Q8TDI8 760 aa13.05□□□□□ -0.32
TRIM55-201ENST00000276573 PREX1Q8TCU6 1659 aa13.04□□□□□ -0.32
TRIM55-201ENST00000276573 PNISRQ8TF01 805 aaKnown RBP13.04□□□□□ -0.32
TRIM55-201ENST00000276573 BRD4O60885 1362 aaPredicted RBP13.03□□□□□ -0.32
TRIM55-201ENST00000276573 PARD3Q8TEW0 1356 aa13.03□□□□□ -0.32
TRIM55-201ENST00000276573 ZFYVE9O95405 1425 aa13.03□□□□□ -0.32
TRIM55-201ENST00000276573 NEXMIFQ5QGS0 1516 aa13.02□□□□□ -0.32
TRIM55-201ENST00000276573 NUTM2DQ5VT03 806 aaPredicted RBP13.02□□□□□ -0.32
TRIM55-201ENST00000276573 TMEM132EQ6IEE7 984 aa13.02□□□□□ -0.32
TRIM55-201ENST00000276573 MLECQ14165 292 aa13.01□□□□□ -0.33
TRIM55-201ENST00000276573 TRAK1Q9UPV9 953 aa13.01□□□□□ -0.33
TRIM55-201ENST00000276573 ERVK-7P63135 1459 aa13.01□□□□□ -0.33
TRIM55-201ENST00000276573 SUPT16HQ9Y5B9 1047 aaKnown RBP13.01□□□□□ -0.33
TRIM55-201ENST00000276573 TMEM131LA2VDJ0 1609 aa13□□□□□ -0.33
TRIM55-201ENST00000276573 ADGRB1O14514 1584 aa13□□□□□ -0.33
TRIM55-201ENST00000276573 ARHGEF40Q8TER5 1519 aa13□□□□□ -0.33
TRIM55-201ENST00000276573 SBNO2Q9Y2G9 1366 aa13□□□□□ -0.33
TRIM55-201ENST00000276573 CENPJQ9HC77 1338 aaPredicted RBP13□□□□□ -0.33
TRIM55-201ENST00000276573 NLRP13Q86W25 1043 aa13□□□□□ -0.33
TRIM55-201ENST00000276573 MYO3AQ8NEV4 1616 aa13□□□□□ -0.33
TRIM55-201ENST00000276573 ZBED9Q6R2W3 1325 aa13□□□□□ -0.33
TRIM55-201ENST00000276573 CC2D1BQ5T0F9 858 aaKnown RBP13□□□□□ -0.33
TRIM55-201ENST00000276573 KNSTRNQ9Y448 316 aa12.99□□□□□ -0.33
TRIM55-201ENST00000276573 CLTCQ00610 1675 aaKnown RBP12.99□□□□□ -0.33
TRIM55-201ENST00000276573 DNAJC5Q9H3Z4 198 aa12.98□□□□□ -0.33
TRIM55-201ENST00000276573 KDM5AP29375 1690 aaKnown RBP12.97□□□□□ -0.33
TRIM55-201ENST00000276573 LRPPRCP42704 1394 aaKnown RBP12.97□□□□□ -0.33
TRIM55-201ENST00000276573 AMER1Q5JTC6 1135 aaPredicted RBP12.96□□□□□ -0.33
TRIM55-201ENST00000276573 ESF1Q9H501 851 aaKnown RBP12.96□□□□□ -0.33
TRIM55-201ENST00000276573 STAG3Q9UJ98 1225 aa12.96□□□□□ -0.33
TRIM55-201ENST00000276573 MYO5BQ9ULV0 1848 aa12.96□□□□□ -0.33
TRIM55-201ENST00000276573 SPATA31D1Q6ZQQ2 1576 aa12.96□□□□□ -0.34
TRIM55-201ENST00000276573 ZMYM3Q14202 1370 aa12.95□□□□□ -0.34
TRIM55-201ENST00000276573 MYOM1P52179 1685 aa12.95□□□□□ -0.34
TRIM55-201ENST00000276573 FKBP8Q14318 412 aa12.94□□□□□ -0.34
TRIM55-201ENST00000276573 NPC1L1Q9UHC9 1359 aa12.94□□□□□ -0.34
TRIM55-201ENST00000276573 NEFLP07196 543 aa12.93□□□□□ -0.34
TRIM55-201ENST00000276573 PUS7Q96PZ0 661 aaKnown RBP12.93□□□□□ -0.34
TRIM55-201ENST00000276573 ASXL1Q8IXJ9 1541 aa12.93□□□□□ -0.34
TRIM55-201ENST00000276573 QRICH2Q9H0J4 1663 aa12.92□□□□□ -0.34
TRIM55-201ENST00000276573 A2ML1A8K2U0 1454 aa12.92□□□□□ -0.34
TRIM55-201ENST00000276573 CARD14Q9BXL6 1004 aa12.92□□□□□ -0.34
TRIM55-201ENST00000276573 PPP2R1AP30153 589 aa12.91□□□□□ -0.34
TRIM55-201ENST00000276573 SENP3Q9H4L4 574 aaPredicted RBP12.9□□□□□ -0.34
TRIM55-201ENST00000276573 STK26Q9P289 416 aa12.9□□□□□ -0.34
TRIM55-201ENST00000276573 EVC2Q86UK5 1308 aa12.9□□□□□ -0.34
TRIM55-201ENST00000276573 RIMS2Q9UQ26 1411 aa12.89□□□□□ -0.35
TRIM55-201ENST00000276573 ARHGEF28Q8N1W1 1705 aaKnown RBP12.89□□□□□ -0.35
TRIM55-201ENST00000276573 ALKQ9UM73 1620 aa12.89□□□□□ -0.35
TRIM55-201ENST00000276573 SLC12A5Q9H2X9 1139 aa12.89□□□□□ -0.35
TRIM55-201ENST00000276573 INSRP06213 1382 aa12.88□□□□□ -0.35
TRIM55-201ENST00000276573 YTHDC2Q9H6S0 1430 aaKnown RBP12.88□□□□□ -0.35
TRIM55-201ENST00000276573 TRHP20396 242 aaPredicted RBP12.87□□□□□ -0.35
TRIM55-201ENST00000276573 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.87□□□□□ -0.35
TRIM55-201ENST00000276573 TNRQ92752 1358 aa12.86□□□□□ -0.35
TRIM55-201ENST00000276573 SMG6Q86US8 1419 aaKnown RBP12.86□□□□□ -0.35
TRIM55-201ENST00000276573 SAFB2Q14151 953 aaKnown RBP eCLIP12.86□□□□□ -0.35
TRIM55-201ENST00000276573 HDGFP51858 240 aaKnown RBP12.85□□□□□ -0.35
TRIM55-201ENST00000276573 PRAM1Q96QH2 718 aa12.85□□□□□ -0.35
TRIM55-201ENST00000276573 POGKQ9P215 609 aa12.85□□□□□ -0.35
TRIM55-201ENST00000276573 PTPRMP28827 1452 aa12.85□□□□□ -0.35
TRIM55-201ENST00000276573 TULP4Q9NRJ4 1543 aa12.85□□□□□ -0.35
TRIM55-201ENST00000276573 SENP3-EIF4A1A0A087X0R7 540 aa12.85□□□□□ -0.35
TRIM55-201ENST00000276573 CABP2Q9NPB3 220 aa12.85□□□□□ -0.35
TRIM55-201ENST00000276573 NUDCQ9Y266 331 aa12.85□□□□□ -0.35
TRIM55-201ENST00000276573 BCANQ96GW7 911 aa12.84□□□□□ -0.35
TRIM55-201ENST00000276573 ADAMTS8Q9UP79 889 aa12.83□□□□□ -0.35
TRIM55-201ENST00000276573 NSD3Q9BZ95 1437 aa12.82□□□□□ -0.36
TRIM55-201ENST00000276573 BLMP54132 1417 aaPredicted RBP12.82□□□□□ -0.36
TRIM55-201ENST00000276573 MINK1Q8N4C8 1332 aaPredicted RBP12.82□□□□□ -0.36
TRIM55-201ENST00000276573 ANKRD36BQ8N2N9 1353 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms