RNA–Protein interactions for RNA: ENST00000274071.6

PDGFC-201, Transcript of platelet derived growth factor C, humanhuman

TSL 1 (best)

Gene PDGFC, Length 2,987 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-201ENST00000274071 PLB1Q6P1J6 1458 aa11.66□□□□□ -0.54
PDGFC-201ENST00000274071 SPRYD3Q8NCJ5 442 aa11.66□□□□□ -0.54
PDGFC-201ENST00000274071 CDCA7LQ96GN5 454 aa11.66□□□□□ -0.54
PDGFC-201ENST00000274071 XPCQ01831 940 aaPredicted RBP11.65□□□□□ -0.54
PDGFC-201ENST00000274071 TCOF1Q13428 1488 aaKnown RBP11.65□□□□□ -0.54
PDGFC-201ENST00000274071 E9PSI1 815 aa11.65□□□□□ -0.54
PDGFC-201ENST00000274071 ZNF500O60304 480 aaPredicted RBP11.65□□□□□ -0.54
PDGFC-201ENST00000274071 MIA2Q96PC5 1412 aa11.65□□□□□ -0.55
PDGFC-201ENST00000274071 CHIC2Q9UKJ5 165 aa11.64□□□□□ -0.55
PDGFC-201ENST00000274071 LRPPRCP42704 1394 aaKnown RBP11.64□□□□□ -0.55
PDGFC-201ENST00000274071 IRX3P78415 501 aaPredicted RBP11.64□□□□□ -0.55
PDGFC-201ENST00000274071 PDE3BQ13370 1112 aa11.64□□□□□ -0.55
PDGFC-201ENST00000274071 NAIPQ13075 1403 aa11.64□□□□□ -0.55
PDGFC-201ENST00000274071 IRX5P78411 483 aaPredicted RBP11.63□□□□□ -0.55
PDGFC-201ENST00000274071 ATP2B3Q16720 1220 aa11.62□□□□□ -0.55
PDGFC-201ENST00000274071 RRP7BPQ9NSQ0 103 aa11.62□□□□□ -0.55
PDGFC-201ENST00000274071 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.62□□□□□ -0.55
PDGFC-201ENST00000274071 DDX11L8A8MPP1 907 aa11.62□□□□□ -0.55
PDGFC-201ENST00000274071 CHMP5Q9NZZ3 219 aa11.62□□□□□ -0.55
PDGFC-201ENST00000274071 NOL7Q9UMY1 257 aaKnown RBP11.62□□□□□ -0.55
PDGFC-201ENST00000274071 PRG4Q92954 1404 aaPredicted RBP11.62□□□□□ -0.55
PDGFC-201ENST00000274071 UACAQ9BZF9 1416 aa11.62□□□□□ -0.55
PDGFC-201ENST00000274071 NASPP49321 788 aaPredicted RBP11.61□□□□□ -0.55
PDGFC-201ENST00000274071 SASS6Q6UVJ0 657 aa11.61□□□□□ -0.55
PDGFC-201ENST00000274071 IGSF3O75054 1194 aa11.61□□□□□ -0.55
PDGFC-201ENST00000274071 CERS3Q8IU89 383 aa11.61□□□□□ -0.55
PDGFC-201ENST00000274071 RNF216Q9NWF9 866 aaPredicted RBP11.61□□□□□ -0.55
PDGFC-201ENST00000274071 TROQ12816 1431 aaPredicted RBP11.6□□□□□ -0.55
PDGFC-201ENST00000274071 NLRP1Q9C000 1473 aa11.6□□□□□ -0.55
PDGFC-201ENST00000274071 HS1BP3Q53T59 392 aa11.59□□□□□ -0.55
PDGFC-201ENST00000274071 PANK3Q9H999 370 aa11.59□□□□□ -0.55
PDGFC-201ENST00000274071 ZNF644Q9H582 1327 aaPredicted RBP11.59□□□□□ -0.55
PDGFC-201ENST00000274071 ZNF710Q8N1W2 664 aa11.59□□□□□ -0.55
PDGFC-201ENST00000274071 JARID2Q92833 1246 aaPredicted RBP11.59□□□□□ -0.55
PDGFC-201ENST00000274071 CHD1O14646 1710 aa11.59□□□□□ -0.55
PDGFC-201ENST00000274071 CSPP1Q1MSJ5 1256 aa11.58□□□□□ -0.55
PDGFC-201ENST00000274071 SLC20A2Q08357 652 aa11.58□□□□□ -0.56
PDGFC-201ENST00000274071 ABCA8O94911 1581 aa11.57□□□□□ -0.56
PDGFC-201ENST00000274071 PLEKHD1A6NEE1 506 aa11.57□□□□□ -0.56
PDGFC-201ENST00000274071 SAMD1Q6SPF0 538 aaPredicted RBP11.57□□□□□ -0.56
PDGFC-201ENST00000274071 TBC1D32Q96NH3 1257 aa11.57□□□□□ -0.56
PDGFC-201ENST00000274071 SPATA31E1Q6ZUB1 1445 aa11.57□□□□□ -0.56
PDGFC-201ENST00000274071 KCNJ4P48050 445 aa11.56□□□□□ -0.56
PDGFC-201ENST00000274071 TSC1Q92574 1164 aa11.56□□□□□ -0.56
PDGFC-201ENST00000274071 L3MBTL2Q969R5 705 aa11.56□□□□□ -0.56
PDGFC-201ENST00000274071 CFDP1Q9UEE9 299 aaPredicted RBP11.56□□□□□ -0.56
PDGFC-201ENST00000274071 PTPRGP23470 1445 aa11.56□□□□□ -0.56
PDGFC-201ENST00000274071 DNAJC2Q99543 621 aaKnown RBP11.56□□□□□ -0.56
PDGFC-201ENST00000274071 ATP10BO94823 1461 aa11.55□□□□□ -0.56
PDGFC-201ENST00000274071 SPDYE4A6NLX3 237 aa11.55□□□□□ -0.56
PDGFC-201ENST00000274071 DAPK1P53355 1430 aa11.55□□□□□ -0.56
PDGFC-201ENST00000274071 KIF14Q15058 1648 aa11.54□□□□□ -0.56
PDGFC-201ENST00000274071 ABCC5O15440 1437 aa11.54□□□□□ -0.56
PDGFC-201ENST00000274071 GCC2Q8IWJ2 1684 aa11.54□□□□□ -0.56
PDGFC-201ENST00000274071 MYRIPQ8NFW9 859 aa11.54□□□□□ -0.56
PDGFC-201ENST00000274071 ZKSCAN5Q9Y2L8 839 aa11.54□□□□□ -0.56
PDGFC-201ENST00000274071 GPATCH8Q9UKJ3 1502 aaKnown RBP11.54□□□□□ -0.56
PDGFC-201ENST00000274071 POLR3GLQ9BT43 218 aa11.54□□□□□ -0.56
PDGFC-201ENST00000274071 ZNF692Q9BU19 519 aaPredicted RBP11.54□□□□□ -0.56
PDGFC-201ENST00000274071 ZNF777Q9ULD5 760 aaPredicted RBP11.54□□□□□ -0.56
PDGFC-201ENST00000274071 NBPF8Q3BBV2 869 aa11.53□□□□□ -0.56
PDGFC-201ENST00000274071 ZNF771Q7L3S4 317 aaPredicted RBP11.53□□□□□ -0.56
PDGFC-201ENST00000274071 VIRMAQ69YN4 1812 aaKnown RBP11.53□□□□□ -0.56
PDGFC-201ENST00000274071 AEBP1Q8IUX7 1158 aa11.53□□□□□ -0.56
PDGFC-201ENST00000274071 UPF2Q9HAU5 1272 aaKnown RBP11.53□□□□□ -0.56
PDGFC-201ENST00000274071 KCNG1Q9UIX4 513 aa11.53□□□□□ -0.56
PDGFC-201ENST00000274071 DNMT1P26358 1616 aaKnown RBP11.53□□□□□ -0.56
PDGFC-201ENST00000274071 ADCY10Q96PN6 1610 aa11.53□□□□□ -0.56
PDGFC-201ENST00000274071 SKOR2Q2VWA4 1001 aaPredicted RBP11.52□□□□□ -0.56
PDGFC-201ENST00000274071 KDM6BO15054 1643 aa11.52□□□□□ -0.56
PDGFC-201ENST00000274071 BRD4O60885 1362 aaPredicted RBP11.52□□□□□ -0.57
PDGFC-201ENST00000274071 ROCK1Q13464 1354 aa11.52□□□□□ -0.57
PDGFC-201ENST00000274071 MMP14P50281 582 aa11.52□□□□□ -0.57
PDGFC-201ENST00000274071 SLC52A1Q9NWF4 448 aa11.52□□□□□ -0.57
PDGFC-201ENST00000274071 ITSN2Q9NZM3 1697 aa11.52□□□□□ -0.57
PDGFC-201ENST00000274071 PDLIM2Q96JY6 352 aa11.51□□□□□ -0.57
PDGFC-201ENST00000274071 BCCIPQ9P287 314 aaKnown RBP eCLIP11.51□□□□□ -0.57
PDGFC-201ENST00000274071 CAMSAP2Q08AD1 1489 aa11.51□□□□□ -0.57
PDGFC-201ENST00000274071 MCM5P33992 734 aa11.51□□□□□ -0.57
PDGFC-201ENST00000274071 TNPO1Q92973 898 aaKnown RBP11.51□□□□□ -0.57
PDGFC-201ENST00000274071 IGHDP01880 384 aa11.5□□□□□ -0.57
PDGFC-201ENST00000274071 NBPF1Q3BBV0 1214 aa11.5□□□□□ -0.57
PDGFC-201ENST00000274071 SHROOM2Q13796 1616 aa11.5□□□□□ -0.57
PDGFC-201ENST00000274071 POLR1AO95602 1720 aaPredicted RBP11.5□□□□□ -0.57
PDGFC-201ENST00000274071 MPHOSPH9Q99550 1183 aa11.49□□□□□ -0.57
PDGFC-201ENST00000274071 MYBBP1AQ9BQG0 1328 aaKnown RBP11.49□□□□□ -0.57
PDGFC-201ENST00000274071 GTF2F1P35269 517 aaKnown RBP eCLIP11.49□□□□□ -0.57
PDGFC-201ENST00000274071 DDIT3P35638 169 aa11.49□□□□□ -0.57
PDGFC-201ENST00000274071 ZBTB9Q96C00 473 aa11.49□□□□□ -0.57
PDGFC-201ENST00000274071 HDAC5Q9UQL6 1122 aa11.49□□□□□ -0.57
PDGFC-201ENST00000274071 FAM177BA6PVY3 158 aa11.48□□□□□ -0.57
PDGFC-201ENST00000274071 NGEFQ8N5V2 710 aa11.48□□□□□ -0.57
PDGFC-201ENST00000274071 CHMP4CQ96CF2 233 aa11.48□□□□□ -0.57
PDGFC-201ENST00000274071 SOX12O15370 315 aa11.48□□□□□ -0.57
PDGFC-201ENST00000274071 CAPN2P17655 700 aa11.48□□□□□ -0.57
PDGFC-201ENST00000274071 PSEN1P49768 467 aa11.48□□□□□ -0.57
PDGFC-201ENST00000274071 MAPK8IP3Q9UPT6 1336 aa11.48□□□□□ -0.57
PDGFC-201ENST00000274071 ABCC10Q5T3U5 1492 aa11.47□□□□□ -0.57
PDGFC-201ENST00000274071 DENND4BO75064 1496 aaPredicted RBP11.47□□□□□ -0.57
PDGFC-201ENST00000274071 GBP4Q96PP9 640 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms