RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 ZNF644Q9H582 1327 aaPredicted RBP14.1□□□□□ -0.15
USP53-201ENST00000274030 TPD52L1Q16890 204 aaPredicted RBP14.09□□□□□ -0.15
USP53-201ENST00000274030 DDX11L8A8MPP1 907 aa14.09□□□□□ -0.15
USP53-201ENST00000274030 FKBP5Q13451 457 aaPredicted RBP14.09□□□□□ -0.15
USP53-201ENST00000274030 APPP05067 770 aa14.09□□□□□ -0.15
USP53-201ENST00000274030 AKAP17AQ02040 695 aaKnown RBP14.09□□□□□ -0.15
USP53-201ENST00000274030 TPM3P06753 285 aa14.09□□□□□ -0.15
USP53-201ENST00000274030 PSME1Q06323 249 aa14.08□□□□□ -0.16
USP53-201ENST00000274030 NUTM2GQ5VZR2 741 aa14.08□□□□□ -0.16
USP53-201ENST00000274030 DZIP1LQ8IYY4 767 aaKnown RBP14.08□□□□□ -0.16
USP53-201ENST00000274030 CCAR2Q8N163 923 aaKnown RBP14.08□□□□□ -0.16
USP53-201ENST00000274030 BECN2A8MW95 431 aa14.07□□□□□ -0.16
USP53-201ENST00000274030 TOP2AP11388 1531 aaKnown RBP14.07□□□□□ -0.16
USP53-201ENST00000274030 IFIT2P09913 472 aaKnown RBP14.07□□□□□ -0.16
USP53-201ENST00000274030 GOLGA6L19H0YKK7 550 aa14.07□□□□□ -0.16
USP53-201ENST00000274030 UACAQ9BZF9 1416 aa14.06□□□□□ -0.16
USP53-201ENST00000274030 GGNBP2Q9H3C7 697 aa14.06□□□□□ -0.16
USP53-201ENST00000274030 ANO2Q9NQ90 1003 aa14.06□□□□□ -0.16
USP53-201ENST00000274030 DDX19BQ9UMR2 479 aa14.06□□□□□ -0.16
USP53-201ENST00000274030 LNPKQ9C0E8 428 aa14.06□□□□□ -0.16
USP53-201ENST00000274030 CEP89Q96ST8 783 aa14.06□□□□□ -0.16
USP53-201ENST00000274030 SYNE3Q6ZMZ3 975 aa14.05□□□□□ -0.16
USP53-201ENST00000274030 GOLGA6L1Q8N7Z2 621 aa14.05□□□□□ -0.16
USP53-201ENST00000274030 FOSBP53539 338 aa14.05□□□□□ -0.16
USP53-201ENST00000274030 TMEM132EQ6IEE7 984 aa14.05□□□□□ -0.16
USP53-201ENST00000274030 ZKSCAN1P17029 563 aaPredicted RBP14.04□□□□□ -0.16
USP53-201ENST00000274030 AIMP1Q12904 312 aaKnown RBP14.04□□□□□ -0.16
USP53-201ENST00000274030 ATP6V1DQ9Y5K8 247 aa14.04□□□□□ -0.16
USP53-201ENST00000274030 TNNT3P45378 269 aaPredicted RBP14.03□□□□□ -0.16
USP53-201ENST00000274030 GSE1Q14687 1217 aa14.03□□□□□ -0.16
USP53-201ENST00000274030 FBXW7Q969H0 707 aa14.03□□□□□ -0.16
USP53-201ENST00000274030 PANK1Q8TE04 598 aa14.03□□□□□ -0.16
USP53-201ENST00000274030 CABP2Q9NPB3 220 aa14.03□□□□□ -0.16
USP53-201ENST00000274030 TSPYL4Q9UJ04 414 aa14.03□□□□□ -0.16
USP53-201ENST00000274030 REC8O95072 547 aa14.03□□□□□ -0.16
USP53-201ENST00000274030 RUFY2Q8WXA3 655 aa14.03□□□□□ -0.16
USP53-201ENST00000274030 API5Q9BZZ5 524 aaKnown RBP14.03□□□□□ -0.16
USP53-201ENST00000274030 CPLX1O14810 134 aa14.02□□□□□ -0.16
USP53-201ENST00000274030 ZNF592Q92610 1267 aa14.02□□□□□ -0.16
USP53-201ENST00000274030 DHX16O60231 1041 aaKnown RBP14.02□□□□□ -0.16
USP53-201ENST00000274030 VPS37DQ86XT2 251 aa14.02□□□□□ -0.16
USP53-201ENST00000274030 G3BP1Q13283 466 aaKnown RBP eCLIP14.02□□□□□ -0.17
USP53-201ENST00000274030 RUNDC1Q96C34 613 aa14.02□□□□□ -0.17
USP53-201ENST00000274030 VPS37CA5D8V6 355 aaPredicted RBP14.02□□□□□ -0.17
USP53-201ENST00000274030 TSR1Q2NL82 804 aaKnown RBP14.01□□□□□ -0.17
USP53-201ENST00000274030 CPLX2Q6PUV4 134 aaKnown RBP14.01□□□□□ -0.17
USP53-201ENST00000274030 KIF7Q2M1P5 1343 aa14.01□□□□□ -0.17
USP53-201ENST00000274030 TRIM29Q14134 588 aa14□□□□□ -0.17
USP53-201ENST00000274030 DDX58O95786 925 aaKnown RBP14□□□□□ -0.17
USP53-201ENST00000274030 SAMD1Q6SPF0 538 aaPredicted RBP14□□□□□ -0.17
USP53-201ENST00000274030 BICD2Q8TD16 824 aa14□□□□□ -0.17
USP53-201ENST00000274030 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.99□□□□□ -0.17
USP53-201ENST00000274030 NEUROD6Q96NK8 337 aa13.99□□□□□ -0.17
USP53-201ENST00000274030 NOL10Q9BSC4 688 aaKnown RBP13.99□□□□□ -0.17
USP53-201ENST00000274030 FANCD2Q9BXW9 1451 aa13.99□□□□□ -0.17
USP53-201ENST00000274030 USP35Q9P2H5 1018 aa13.99□□□□□ -0.17
USP53-201ENST00000274030 FAM69CQ0P6D2 419 aa13.99□□□□□ -0.17
USP53-201ENST00000274030 SKOR2Q2VWA4 1001 aaPredicted RBP13.99□□□□□ -0.17
USP53-201ENST00000274030 NFXL1Q6ZNB6 911 aa13.98□□□□□ -0.17
USP53-201ENST00000274030 PCMTD1Q96MG8 357 aaPredicted RBP13.98□□□□□ -0.17
USP53-201ENST00000274030 ATAD2BQ9ULI0 1458 aa13.98□□□□□ -0.17
USP53-201ENST00000274030 LRRFIP1Q32MZ4 808 aaKnown RBP13.98□□□□□ -0.17
USP53-201ENST00000274030 NLRP2Q9NX02 1062 aa13.98□□□□□ -0.17
USP53-201ENST00000274030 TRIM34Q9BYJ4 488 aa13.98□□□□□ -0.17
USP53-201ENST00000274030 TRDNQ13061 729 aa13.97□□□□□ -0.17
USP53-201ENST00000274030 KDM4AO75164 1064 aa13.97□□□□□ -0.17
USP53-201ENST00000274030 RIC3Q7Z5B4 369 aa13.97□□□□□ -0.17
USP53-201ENST00000274030 RAPGEF4Q8WZA2 1011 aa13.97□□□□□ -0.17
USP53-201ENST00000274030 ADAMTS8Q9UP79 889 aa13.97□□□□□ -0.17
USP53-201ENST00000274030 AMOTL1Q8IY63 956 aa13.97□□□□□ -0.17
USP53-201ENST00000274030 GNAI1P63096 354 aa13.97□□□□□ -0.17
USP53-201ENST00000274030 OSCARQ8IYS5 282 aa13.97□□□□□ -0.17
USP53-201ENST00000274030 FYB1O15117 783 aa13.96□□□□□ -0.17
USP53-201ENST00000274030 ZNF428Q96B54 188 aa13.96□□□□□ -0.17
USP53-201ENST00000274030 MTHFSP49914 203 aa13.96□□□□□ -0.18
USP53-201ENST00000274030 CDCA7LQ96GN5 454 aa13.96□□□□□ -0.18
USP53-201ENST00000274030 CCDC7Q96M83 1385 aa13.96□□□□□ -0.18
USP53-201ENST00000274030 BCL11BQ9C0K0 894 aaPredicted RBP13.96□□□□□ -0.18
USP53-201ENST00000274030 TCEAL9Q9UHQ7 104 aa13.96□□□□□ -0.18
USP53-201ENST00000274030 TPM1P09493 284 aa13.95□□□□□ -0.18
USP53-201ENST00000274030 NLRP6P59044 892 aa13.95□□□□□ -0.18
USP53-201ENST00000274030 SMC3Q9UQE7 1217 aa13.95□□□□□ -0.18
USP53-201ENST00000274030 HSP90AA2PQ14568 343 aaPredicted RBP13.95□□□□□ -0.18
USP53-201ENST00000274030 RNF20Q5VTR2 975 aa13.95□□□□□ -0.18
USP53-201ENST00000274030 CHMP4CQ96CF2 233 aa13.95□□□□□ -0.18
USP53-201ENST00000274030 CHMP5Q9NZZ3 219 aa13.95□□□□□ -0.18
USP53-201ENST00000274030 FAM177BA6PVY3 158 aa13.94□□□□□ -0.18
USP53-201ENST00000274030 INTS3Q68E01 1043 aaKnown RBP13.94□□□□□ -0.18
USP53-201ENST00000274030 MTMR7Q9Y216 660 aa13.94□□□□□ -0.18
USP53-201ENST00000274030 WASHC4Q2M389 1173 aa13.94□□□□□ -0.18
USP53-201ENST00000274030 C22orf23Q9BZE7 217 aa13.94□□□□□ -0.18
USP53-201ENST00000274030 CTDP1Q9Y5B0 961 aaPredicted RBP13.94□□□□□ -0.18
USP53-201ENST00000274030 TPM2P07951 284 aa13.94□□□□□ -0.18
USP53-201ENST00000274030 KLHL34Q8N239 644 aa13.94□□□□□ -0.18
USP53-201ENST00000274030 CFAP70Q5T0N1 1121 aa13.93□□□□□ -0.18
USP53-201ENST00000274030 MEX3CQ5U5Q3 659 aaKnown RBP13.93□□□□□ -0.18
USP53-201ENST00000274030 AFAP1Q8N556 730 aa13.93□□□□□ -0.18
USP53-201ENST00000274030 MYOM3Q5VTT5 1437 aa13.93□□□□□ -0.18
USP53-201ENST00000274030 RAD54L2Q9Y4B4 1467 aa13.92□□□□□ -0.18
USP53-201ENST00000274030 UBTFL1P0CB47 393 aaPredicted RBP13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms