RNA–Protein interactions for RNA: ENST00000269397.8

CBX4-201, Transcript of chromobox 4, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CBX4, Length 2,664 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-201ENST00000269397 MAST1Q9Y2H9 1570 aa35.85■■■■□ 3.33
CBX4-201ENST00000269397 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP35.85■■■■□ 3.332e-7■■■□□ 18.4
CBX4-201ENST00000269397 SLFN5Q08AF3 891 aa35.83■■■■□ 3.33
CBX4-201ENST00000269397 GOLGA6L2Q8N9W4 650 aaPredicted RBP35.83■■■■□ 3.33
CBX4-201ENST00000269397 RNF17Q9BXT8 1623 aaKnown RBP35.81■■■■□ 3.32
CBX4-201ENST00000269397 APAF1O14727 1248 aa35.8■■■■□ 3.32
CBX4-201ENST00000269397 ATP10AO60312 1499 aa35.8■■■■□ 3.32
CBX4-201ENST00000269397 BCAR3O75815 825 aa35.8■■■■□ 3.32
CBX4-201ENST00000269397 GSE1Q14687 1217 aa35.79■■■■□ 3.32
CBX4-201ENST00000269397 PLXNC1O60486 1568 aa35.78■■■■□ 3.32
CBX4-201ENST00000269397 DUOX2Q9NRD8 1548 aa35.77■■■■□ 3.32
CBX4-201ENST00000269397 BRPF3Q9ULD4 1205 aa35.77■■■■□ 3.32
CBX4-201ENST00000269397 CDCA8Q53HL2 280 aa35.72■■■■□ 3.31
CBX4-201ENST00000269397 DMRT2Q9Y5R5 561 aa35.72■■■■□ 3.31
CBX4-201ENST00000269397 ASXL1Q8IXJ9 1541 aa35.72■■■■□ 3.31
CBX4-201ENST00000269397 MADDQ8WXG6 1647 aa35.71■■■■□ 3.31
CBX4-201ENST00000269397 FRAT1Q92837 279 aaPredicted RBP35.71■■■■□ 3.31
CBX4-201ENST00000269397 IQGAP1P46940 1657 aa35.69■■■■□ 3.3
CBX4-201ENST00000269397 TRMT2AQ8IZ69 625 aaKnown RBP35.69■■■■□ 3.3
CBX4-201ENST00000269397 PIK3C2GO75747 1445 aa35.67■■■■□ 3.3
CBX4-201ENST00000269397 SCAF11Q99590 1463 aaKnown RBP35.67■■■■□ 3.3
CBX4-201ENST00000269397 IGHDP01880 384 aa35.66■■■■□ 3.3
CBX4-201ENST00000269397 SYNMO15061 1565 aa35.66■■■■□ 3.3
CBX4-201ENST00000269397 FRAT2O75474 233 aaPredicted RBP35.65■■■■□ 3.3
CBX4-201ENST00000269397 NKTRP30414 1462 aaKnown RBP35.63■■■■□ 3.3
CBX4-201ENST00000269397 TRAPPC8Q9Y2L5 1435 aa35.62■■■■□ 3.29
CBX4-201ENST00000269397 CLASP1Q7Z460 1538 aa35.6■■■■□ 3.29
CBX4-201ENST00000269397 EFCAB2Q5VUJ9 269 aa35.59■■■■□ 3.29
CBX4-201ENST00000269397 AFAP1Q8N556 730 aa35.58■■■■□ 3.29
CBX4-201ENST00000269397 MYOM1P52179 1685 aa35.58■■■■□ 3.29
CBX4-201ENST00000269397 E9PSI1 815 aa35.58■■■■□ 3.29
CBX4-201ENST00000269397 EIF3AQ14152 1382 aaKnown RBP35.57■■■■□ 3.29
CBX4-201ENST00000269397 PANK1Q8TE04 598 aa35.56■■■■□ 3.28
CBX4-201ENST00000269397 CARD14Q9BXL6 1004 aa35.55■■■■□ 3.28
CBX4-201ENST00000269397 CFAP70Q5T0N1 1121 aa35.55■■■■□ 3.28
CBX4-201ENST00000269397 COG6Q9Y2V7 657 aa35.54■■■■□ 3.28
CBX4-201ENST00000269397 ERCC6L2Q5T890 1561 aa35.54■■■■□ 3.28
CBX4-201ENST00000269397 CANXP27824 592 aaKnown RBP35.53■■■■□ 3.28
CBX4-201ENST00000269397 ZBTB4Q9P1Z0 1013 aaPredicted RBP35.53■■■■□ 3.28
CBX4-201ENST00000269397 PLCH2O75038 1416 aa35.52■■■■□ 3.28
CBX4-201ENST00000269397 SPAG9O60271 1321 aaKnown RBP35.52■■■■□ 3.28
CBX4-201ENST00000269397 SPHKAPQ2M3C7 1700 aa35.52■■■■□ 3.28
CBX4-201ENST00000269397 SEC24BO95487 1268 aa35.52■■■■□ 3.28
CBX4-201ENST00000269397 SCAPERQ9BY12 1400 aa35.52■■■■□ 3.28
CBX4-201ENST00000269397 NEUROD2Q15784 382 aa35.51■■■■□ 3.28
CBX4-201ENST00000269397 NPC1L1Q9UHC9 1359 aa35.51■■■■□ 3.27
CBX4-201ENST00000269397 ABCC2Q92887 1545 aa35.51■■■■□ 3.27
CBX4-201ENST00000269397 CLTCL1P53675 1640 aa35.51■■■■□ 3.27
CBX4-201ENST00000269397 TRPM2O94759 1503 aa35.49■■■■□ 3.27
CBX4-201ENST00000269397 USP19O94966 1318 aa35.48■■■■□ 3.27
CBX4-201ENST00000269397 CENPJQ9HC77 1338 aaPredicted RBP35.47■■■■□ 3.27
CBX4-201ENST00000269397 TNNT2P45379 298 aaPredicted RBP35.47■■■■□ 3.27
CBX4-201ENST00000269397 RRP7AQ9Y3A4 280 aaKnown RBP35.46■■■■□ 3.27
CBX4-201ENST00000269397 CLUAP1Q96AJ1 413 aa35.45■■■■□ 3.27
CBX4-201ENST00000269397 WWC1Q8IX03 1113 aa35.45■■■■□ 3.27
CBX4-201ENST00000269397 CEP152O94986 1710 aa35.44■■■■□ 3.26
CBX4-201ENST00000269397 KDM5AP29375 1690 aaKnown RBP35.44■■■■□ 3.26
CBX4-201ENST00000269397 CGNL1Q0VF96 1302 aa35.43■■■■□ 3.26
CBX4-201ENST00000269397 ABCC1P33527 1531 aa35.43■■■■□ 3.26
CBX4-201ENST00000269397 PTPRTO14522 1441 aa35.42■■■■□ 3.26
CBX4-201ENST00000269397 ADGRF5Q8IZF2 1346 aa35.42■■■■□ 3.26
CBX4-201ENST00000269397 CHD1O14646 1710 aa35.42■■■■□ 3.26
CBX4-201ENST00000269397 PDE3AQ14432 1141 aa35.41■■■■□ 3.26
CBX4-201ENST00000269397 ERVK-7P63135 1459 aa35.41■■■■□ 3.26
CBX4-201ENST00000269397 STAC3Q96MF2 364 aa35.39■■■■□ 3.26
CBX4-201ENST00000269397 TNNQ9UQP3 1299 aa35.38■■■■□ 3.25
CBX4-201ENST00000269397 KIF3BO15066 747 aa35.37■■■■□ 3.25
CBX4-201ENST00000269397 SLKQ9H2G2 1235 aaPredicted RBP35.37■■■■□ 3.25
CBX4-201ENST00000269397 BCL2L13Q9BXK5 485 aa35.36■■■■□ 3.25
CBX4-201ENST00000269397 UGGT1Q9NYU2 1555 aa35.36■■■■□ 3.25
CBX4-201ENST00000269397 MAPK8IP3Q9UPT6 1336 aa35.32■■■■□ 3.24
CBX4-201ENST00000269397 RLBP1P12271 317 aa35.3■■■■□ 3.24
CBX4-201ENST00000269397 MORC1Q86VD1 984 aa35.29■■■■□ 3.24
CBX4-201ENST00000269397 PCDHB15Q9Y5E8 787 aa35.29■■■■□ 3.24
CBX4-201ENST00000269397 SHROOM2Q13796 1616 aa35.29■■■■□ 3.24
CBX4-201ENST00000269397 ZFYVE16Q7Z3T8 1539 aa35.29■■■■□ 3.24
CBX4-201ENST00000269397 RARSP54136 660 aaKnown RBP35.28■■■■□ 3.24
CBX4-201ENST00000269397 POGKQ9P215 609 aa35.28■■■■□ 3.24
CBX4-201ENST00000269397 ZCCHC11Q5TAX3 1644 aaKnown RBP35.28■■■■□ 3.24
CBX4-201ENST00000269397 VIRMAQ69YN4 1812 aaKnown RBP35.27■■■■□ 3.24
CBX4-201ENST00000269397 KANK1Q14678 1352 aa35.27■■■■□ 3.24
CBX4-201ENST00000269397 TCP11L2Q8N4U5 519 aa35.27■■■■□ 3.24
CBX4-201ENST00000269397 PRKCSHP14314 528 aaPredicted RBP35.26■■■■□ 3.24
CBX4-201ENST00000269397 NGEFQ8N5V2 710 aa35.26■■■■□ 3.24
CBX4-201ENST00000269397 POLR3AO14802 1390 aaPredicted RBP35.26■■■■□ 3.24
CBX4-201ENST00000269397 ABCA6Q8N139 1617 aa35.25■■■■□ 3.23
CBX4-201ENST00000269397 SLC12A5Q9H2X9 1139 aa35.25■■■■□ 3.23
CBX4-201ENST00000269397 TET3O43151 1660 aa35.24■■■■□ 3.23
CBX4-201ENST00000269397 BECN1Q14457 450 aa35.23■■■■□ 3.23
CBX4-201ENST00000269397 TRAK1Q9UPV9 953 aa35.23■■■■□ 3.23
CBX4-201ENST00000269397 NSD3Q9BZ95 1437 aa35.23■■■■□ 3.23
CBX4-201ENST00000269397 CHGAP10645 457 aaKnown RBP35.22■■■■□ 3.23
CBX4-201ENST00000269397 RTEL1-TNFRSF6BF6WH68 1400 aa35.22■■■■□ 3.23
CBX4-201ENST00000269397 RUNDC1Q96C34 613 aa35.21■■■■□ 3.23
CBX4-201ENST00000269397 NINLQ9Y2I6 1382 aa35.21■■■■□ 3.23
CBX4-201ENST00000269397 MAP3K4Q9Y6R4 1608 aa35.21■■■■□ 3.23
CBX4-201ENST00000269397 KIAA1210Q9ULL0 1709 aa35.2■■■■□ 3.23
CBX4-201ENST00000269397 PDZRN3Q9UPQ7 1066 aa35.19■■■■□ 3.22
CBX4-201ENST00000269397 NLRP1Q9C000 1473 aa35.19■■■■□ 3.22
CBX4-201ENST00000269397 SLC24A1O60721 1099 aa35.19■■■■□ 3.22
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms