RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 IQGAP1P46940 1657 aa14.83□□□□□ -0.04
VPS41-201ENST00000265745 NUP155O75694 1391 aa14.83□□□□□ -0.04
VPS41-201ENST00000265745 CFAP65Q6ZU64 1925 aaKnown RBP14.82□□□□□ -0.04
VPS41-201ENST00000265745 SYNMO15061 1565 aa14.81□□□□□ -0.04
VPS41-201ENST00000265745 KCNA6P17658 529 aa14.81□□□□□ -0.04
VPS41-201ENST00000265745 HDGFP51858 240 aaKnown RBP14.81□□□□□ -0.04
VPS41-201ENST00000265745 ILDR2Q71H61 639 aa14.81□□□□□ -0.04
VPS41-201ENST00000265745 PIK3C2BO00750 1634 aa14.81□□□□□ -0.04
VPS41-201ENST00000265745 BCANQ96GW7 911 aa14.79□□□□□ -0.04
VPS41-201ENST00000265745 RRBP1Q9P2E9 1410 aaKnown RBP14.78□□□□□ -0.04
VPS41-201ENST00000265745 CHGAP10645 457 aaKnown RBP14.78□□□□□ -0.04
VPS41-201ENST00000265745 PPP1R15AO75807 674 aaPredicted RBP14.77□□□□□ -0.05
VPS41-201ENST00000265745 ADGRB3O60242 1522 aa14.76□□□□□ -0.05
VPS41-201ENST00000265745 ZFYVE9O95405 1425 aa14.76□□□□□ -0.05
VPS41-201ENST00000265745 PROSER2Q86WR7 435 aaPredicted RBP14.76□□□□□ -0.05
VPS41-201ENST00000265745 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.76□□□□□ -0.05
VPS41-201ENST00000265745 RIMS2Q9UQ26 1411 aa14.75□□□□□ -0.05
VPS41-201ENST00000265745 TMEM94Q12767 1356 aa14.75□□□□□ -0.05
VPS41-201ENST00000265745 TET3O43151 1660 aa14.75□□□□□ -0.05
VPS41-201ENST00000265745 KDM5AP29375 1690 aaKnown RBP14.75□□□□□ -0.05
VPS41-201ENST00000265745 ALKQ9UM73 1620 aa14.75□□□□□ -0.05
VPS41-201ENST00000265745 TBX22Q9Y458 520 aa14.75□□□□□ -0.05
VPS41-201ENST00000265745 UNC13BO14795 1591 aa14.75□□□□□ -0.05
VPS41-201ENST00000265745 PLEKHG1Q9ULL1 1385 aa14.74□□□□□ -0.05
VPS41-201ENST00000265745 RBM33Q96EV2 1170 aaKnown RBP14.74□□□□□ -0.05
VPS41-201ENST00000265745 STRCP1A6NGW2 1772 aa14.73□□□□□ -0.05
VPS41-201ENST00000265745 NUTM2DQ5VT03 806 aaPredicted RBP14.73□□□□□ -0.05
VPS41-201ENST00000265745 NAIPQ13075 1403 aa14.71□□□□□ -0.05
VPS41-201ENST00000265745 MYCNP04198 464 aaPredicted RBP14.7□□□□□ -0.06
VPS41-201ENST00000265745 SOCS7O14512 581 aa14.69□□□□□ -0.06
VPS41-201ENST00000265745 TMEM131LA2VDJ0 1609 aa14.69□□□□□ -0.06
VPS41-201ENST00000265745 IQGAP3Q86VI3 1631 aa14.69□□□□□ -0.06
VPS41-201ENST00000265745 FAM135BQ49AJ0 1406 aa14.68□□□□□ -0.06
VPS41-201ENST00000265745 ADAMTS13Q76LX8 1427 aa14.67□□□□□ -0.06
VPS41-201ENST00000265745 ATXN8OSP0DMR3 200 aa14.67□□□□□ -0.06
VPS41-201ENST00000265745 E9PCH4 1651 aa14.67□□□□□ -0.06
VPS41-201ENST00000265745 NKTRP30414 1462 aaKnown RBP14.66□□□□□ -0.06
VPS41-201ENST00000265745 TRIM52Q96A61 297 aa14.66□□□□□ -0.06
VPS41-201ENST00000265745 HFM1A2PYH4 1435 aa14.66□□□□□ -0.06
VPS41-201ENST00000265745 GCC2Q8IWJ2 1684 aa14.65□□□□□ -0.06
VPS41-201ENST00000265745 ZNF326Q5BKZ1 582 aaKnown RBP14.65□□□□□ -0.06
VPS41-201ENST00000265745 SLAIN2Q9P270 581 aa14.65□□□□□ -0.06
VPS41-201ENST00000265745 MSH6P52701 1360 aa14.64□□□□□ -0.07
VPS41-201ENST00000265745 PIK3R4Q99570 1358 aa14.64□□□□□ -0.07
VPS41-201ENST00000265745 AMOTL2Q9Y2J4 779 aa14.64□□□□□ -0.07
VPS41-201ENST00000265745 NCOA3Q9Y6Q9 1424 aa14.63□□□□□ -0.07
VPS41-201ENST00000265745 NWD1Q149M9 1564 aa14.62□□□□□ -0.07
VPS41-201ENST00000265745 C19orf44Q9H6X5 657 aa14.61□□□□□ -0.07
VPS41-201ENST00000265745 C14orf37Q86TY3 774 aa14.6□□□□□ -0.07
VPS41-201ENST00000265745 MED1Q15648 1581 aaPredicted RBP14.59□□□□□ -0.07
VPS41-201ENST00000265745 PTPRUQ92729 1446 aa14.58□□□□□ -0.07
VPS41-201ENST00000265745 CADPS2Q86UW7 1296 aa14.58□□□□□ -0.08
VPS41-201ENST00000265745 METP08581 1390 aa14.58□□□□□ -0.08
VPS41-201ENST00000265745 ATF3P18847 181 aa14.57□□□□□ -0.08
VPS41-201ENST00000265745 XIRP1Q702N8 1843 aaKnown RBP14.57□□□□□ -0.08
VPS41-201ENST00000265745 VGFO15240 615 aaPredicted RBP14.56□□□□□ -0.08
VPS41-201ENST00000265745 RGS17Q9UGC6 210 aaPredicted RBP14.55□□□□□ -0.08
VPS41-201ENST00000265745 RPGRIP1LQ68CZ1 1315 aa14.55□□□□□ -0.08
VPS41-201ENST00000265745 TRPM2O94759 1503 aa14.55□□□□□ -0.08
VPS41-201ENST00000265745 DIP2AQ14689 1571 aa14.55□□□□□ -0.08
VPS41-201ENST00000265745 MYO5BQ9ULV0 1848 aa14.55□□□□□ -0.08
VPS41-201ENST00000265745 MPHOSPH9Q99550 1183 aa14.54□□□□□ -0.08
VPS41-201ENST00000265745 RTN4Q9NQC3 1192 aaKnown RBP14.54□□□□□ -0.08
VPS41-201ENST00000265745 SETBP1Q9Y6X0 1596 aa14.53□□□□□ -0.08
VPS41-201ENST00000265745 CHD2O14647 1828 aaKnown RBP14.52□□□□□ -0.08
VPS41-201ENST00000265745 CLTCL1P53675 1640 aa14.52□□□□□ -0.09
VPS41-201ENST00000265745 SPHKAPQ2M3C7 1700 aa14.51□□□□□ -0.09
VPS41-201ENST00000265745 BRINP3Q76B58 766 aa14.5□□□□□ -0.09
VPS41-201ENST00000265745 NEXMIFQ5QGS0 1516 aa14.5□□□□□ -0.09
VPS41-201ENST00000265745 JCADQ9P266 1359 aa14.49□□□□□ -0.09
VPS41-201ENST00000265745 ROBO1Q9Y6N7 1651 aa14.49□□□□□ -0.09
VPS41-201ENST00000265745 ACIN1Q9UKV3 1341 aaKnown RBP14.49□□□□□ -0.09
VPS41-201ENST00000265745 FKBP8Q14318 412 aa14.49□□□□□ -0.09
VPS41-201ENST00000265745 AMER1Q5JTC6 1135 aaPredicted RBP14.49□□□□□ -0.09
VPS41-201ENST00000265745 NRXN3Q9Y4C0 1643 aa14.48□□□□□ -0.09
VPS41-201ENST00000265745 RGL3Q3MIN7 710 aa14.48□□□□□ -0.09
VPS41-201ENST00000265745 DCCP43146 1447 aa14.48□□□□□ -0.09
VPS41-201ENST00000265745 CCDC144AA2RUR9 1427 aa14.46□□□□□ -0.09
VPS41-201ENST00000265745 ADGRF5Q8IZF2 1346 aa14.45□□□□□ -0.1
VPS41-201ENST00000265745 POTEAQ6S8J7 498 aa14.45□□□□□ -0.1
VPS41-201ENST00000265745 SETD5Q9C0A6 1442 aa14.45□□□□□ -0.1
VPS41-201ENST00000265745 ROBO2Q9HCK4 1378 aa14.45□□□□□ -0.1
VPS41-201ENST00000265745 SPATA31E1Q6ZUB1 1445 aa14.44□□□□□ -0.1
VPS41-201ENST00000265745 SPATA31A6Q5VVP1 1343 aa14.43□□□□□ -0.1
VPS41-201ENST00000265745 MST1RQ04912 1400 aa14.43□□□□□ -0.1
VPS41-201ENST00000265745 ADGRL3Q9HAR2 1447 aa14.43□□□□□ -0.1
VPS41-201ENST00000265745 ANKRD30BQ9BXX2 1392 aa14.43□□□□□ -0.1
VPS41-201ENST00000265745 XRN1Q8IZH2 1706 aaKnown RBP14.43□□□□□ -0.1
VPS41-201ENST00000265745 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.42□□□□□ -0.1
VPS41-201ENST00000265745 PTCH1Q13635 1447 aa14.41□□□□□ -0.1
VPS41-201ENST00000265745 PRAG1Q86YV5 1406 aa14.41□□□□□ -0.1
VPS41-201ENST00000265745 DDX17Q92841 729 aaKnown RBP14.4□□□□□ -0.1
VPS41-201ENST00000265745 LRRC59Q96AG4 307 aaKnown RBP14.4□□□□□ -0.1
VPS41-201ENST00000265745 RAB3GAP2Q9H2M9 1393 aa14.39□□□□□ -0.11
VPS41-201ENST00000265745 AHDC1Q5TGY3 1603 aaPredicted RBP14.39□□□□□ -0.11
VPS41-201ENST00000265745 C1orf167Q5SNV9 1468 aa14.38□□□□□ -0.11
VPS41-201ENST00000265745 COL16A1Q07092 1604 aaPredicted RBP14.38□□□□□ -0.11
VPS41-201ENST00000265745 TMEM132EQ6IEE7 984 aa14.38□□□□□ -0.11
VPS41-201ENST00000265745 ORAI2Q96SN7 254 aa14.38□□□□□ -0.11
VPS41-201ENST00000265745 STK26Q9P289 416 aa14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms