RNA–Protein interactions for RNA: ENST00000262188.12

SMARCD3-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCD3, Length 1,993 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-201ENST00000262188 SETD1BQ9UPS6 1966 aaKnown RBP39.35■■■■□ 3.89
SMARCD3-201ENST00000262188 NEXMIFQ5QGS0 1516 aa39.35■■■■□ 3.89
SMARCD3-201ENST00000262188 PPLO60437 1756 aa39.34■■■■□ 3.89
SMARCD3-201ENST00000262188 ADGRF5Q8IZF2 1346 aa39.33■■■■□ 3.89
SMARCD3-201ENST00000262188 UHRF1BP1Q6BDS2 1440 aa39.29■■■■□ 3.88
SMARCD3-201ENST00000262188 RIMS2Q9UQ26 1411 aa39.28■■■■□ 3.88
SMARCD3-201ENST00000262188 RPGRIP1LQ68CZ1 1315 aa39.28■■■■□ 3.88
SMARCD3-201ENST00000262188 KDM5AP29375 1690 aaKnown RBP39.27■■■■□ 3.88
SMARCD3-201ENST00000262188 PRAG1Q86YV5 1406 aa39.27■■■■□ 3.88
SMARCD3-201ENST00000262188 ZNF142P52746 1687 aaPredicted RBP39.26■■■■□ 3.88
SMARCD3-201ENST00000262188 TMEM2Q9UHN6 1383 aa39.25■■■■□ 3.87
SMARCD3-201ENST00000262188 ZFYVE9O95405 1425 aa39.24■■■■□ 3.87
SMARCD3-201ENST00000262188 MYOM2P54296 1465 aa39.22■■■■□ 3.87
SMARCD3-201ENST00000262188 THEMISQ8N1K5 641 aaPredicted RBP39.22■■■■□ 3.87
SMARCD3-201ENST00000262188 LTKP29376 864 aa39.19■■■■□ 3.86
SMARCD3-201ENST00000262188 VGFO15240 615 aaPredicted RBP39.18■■■■□ 3.86
SMARCD3-201ENST00000262188 NRXN1Q9ULB1 1477 aa39.16■■■■□ 3.86
SMARCD3-201ENST00000262188 NBPF1Q3BBV0 1214 aa39.14■■■■□ 3.86
SMARCD3-201ENST00000262188 TXNDC2Q86VQ3 553 aa39.14■■■■□ 3.86
SMARCD3-201ENST00000262188 ARHGAP23Q9P227 1491 aa39.14■■■■□ 3.86
SMARCD3-201ENST00000262188 SLIT1O75093 1534 aa39.13■■■■□ 3.85
SMARCD3-201ENST00000262188 CFAP70Q5T0N1 1121 aa39.13■■■■□ 3.85
SMARCD3-201ENST00000262188 PIK3C2GO75747 1445 aa39.12■■■■□ 3.85
SMARCD3-201ENST00000262188 HSPA2P54652 639 aa39.11■■■■□ 3.85
SMARCD3-201ENST00000262188 STAC3Q96MF2 364 aa39.11■■■■□ 3.85
SMARCD3-201ENST00000262188 TRPM1Q7Z4N2 1603 aa39.1■■■■□ 3.85
SMARCD3-201ENST00000262188 ABCF1Q8NE71 845 aaKnown RBP eCLIP39.08■■■■□ 3.85
SMARCD3-201ENST00000262188 RALGAPBQ86X10 1494 aa39.07■■■■□ 3.84
SMARCD3-201ENST00000262188 EID1Q9Y6B2 187 aa39.06■■■■□ 3.84
SMARCD3-201ENST00000262188 LMTK3Q96Q04 1460 aa39.06■■■■□ 3.84
SMARCD3-201ENST00000262188 HDGFP51858 240 aaKnown RBP39.03■■■■□ 3.84
SMARCD3-201ENST00000262188 BCANQ96GW7 911 aa39.03■■■■□ 3.84
SMARCD3-201ENST00000262188 ROCK2O75116 1388 aaKnown RBP39.03■■■■□ 3.84
SMARCD3-201ENST00000262188 SCAF11Q99590 1463 aaKnown RBP39.02■■■■□ 3.84
SMARCD3-201ENST00000262188 C14orf93Q9H972 538 aaKnown RBP39■■■■□ 3.83
SMARCD3-201ENST00000262188 TMEM132EQ6IEE7 984 aa38.99■■■■□ 3.83
SMARCD3-201ENST00000262188 NRXN3Q9Y4C0 1643 aa38.99■■■■□ 3.83
SMARCD3-201ENST00000262188 NCKAP5LQ9HCH0 1330 aa38.98■■■■□ 3.83
SMARCD3-201ENST00000262188 ANKLE2Q86XL3 938 aa38.98■■■■□ 3.83
SMARCD3-201ENST00000262188 IQGAP1P46940 1657 aa38.98■■■■□ 3.83
SMARCD3-201ENST00000262188 CARD11Q9BXL7 1154 aa38.97■■■■□ 3.83
SMARCD3-201ENST00000262188 HIRIP3Q9BW71 556 aaPredicted RBP38.96■■■■□ 3.83
SMARCD3-201ENST00000262188 ALKQ9UM73 1620 aa38.95■■■■□ 3.83
SMARCD3-201ENST00000262188 PLEKHG1Q9ULL1 1385 aa38.95■■■■□ 3.83
SMARCD3-201ENST00000262188 SLC26A8Q96RN1 970 aa38.93■■■■□ 3.82
SMARCD3-201ENST00000262188 KIAA1210Q9ULL0 1709 aa38.92■■■■□ 3.82
SMARCD3-201ENST00000262188 SETBP1Q9Y6X0 1596 aa38.91■■■■□ 3.82
SMARCD3-201ENST00000262188 ASXL1Q8IXJ9 1541 aa38.9■■■■□ 3.82
SMARCD3-201ENST00000262188 ADAMTS13Q76LX8 1427 aa38.89■■■■□ 3.82
SMARCD3-201ENST00000262188 GPRASP1Q5JY77 1395 aa38.89■■■■□ 3.82
SMARCD3-201ENST00000262188 ADGRB1O14514 1584 aa38.87■■■■□ 3.81
SMARCD3-201ENST00000262188 SETD1AO15047 1707 aaKnown RBP38.86■■■■□ 3.81
SMARCD3-201ENST00000262188 POLR1AO95602 1720 aaPredicted RBP38.86■■■■□ 3.81
SMARCD3-201ENST00000262188 LAMC1P11047 1609 aa38.85■■■■□ 3.81
SMARCD3-201ENST00000262188 METP08581 1390 aa38.84■■■■□ 3.81
SMARCD3-201ENST00000262188 USP47Q96K76 1375 aa38.83■■■■□ 3.81
SMARCD3-201ENST00000262188 HSPA5P11021 654 aaKnown RBP38.82■■■■□ 3.81
SMARCD3-201ENST00000262188 STK26Q9P289 416 aa38.82■■■■□ 3.8
SMARCD3-201ENST00000262188 NPHP4O75161 1426 aaPredicted RBP38.8■■■■□ 3.8
SMARCD3-201ENST00000262188 TRAK1Q9UPV9 953 aa38.79■■■■□ 3.8
SMARCD3-201ENST00000262188 EIF4G2P78344 907 aaKnown RBP eCLIP38.78■■■■□ 3.8
SMARCD3-201ENST00000262188 MED14O60244 1454 aa38.78■■■■□ 3.8
SMARCD3-201ENST00000262188 STRCQ7RTU9 1775 aa38.73■■■■□ 3.79
SMARCD3-201ENST00000262188 YTHDC2Q9H6S0 1430 aaKnown RBP38.72■■■■□ 3.79
SMARCD3-201ENST00000262188 ST20-MTHFSA0A0A6YYL1 179 aa38.71■■■■□ 3.79
SMARCD3-201ENST00000262188 TBX22Q9Y458 520 aa38.71■■■■□ 3.79
SMARCD3-201ENST00000262188 PTPRUQ92729 1446 aa38.68■■■■□ 3.78
SMARCD3-201ENST00000262188 AEBP2Q6ZN18 517 aaPredicted RBP38.65■■■■□ 3.78
SMARCD3-201ENST00000262188 DIP2AQ14689 1571 aa38.65■■■■□ 3.78
SMARCD3-201ENST00000262188 LRPPRCP42704 1394 aaKnown RBP38.63■■■■□ 3.77
SMARCD3-201ENST00000262188 SAFB2Q14151 953 aaKnown RBP eCLIP38.61■■■■□ 3.77
SMARCD3-201ENST00000262188 ARHGEF28Q8N1W1 1705 aaKnown RBP38.6■■■■□ 3.77
SMARCD3-201ENST00000262188 ZNF316A6NFI3 1004 aaPredicted RBP38.59■■■■□ 3.77
SMARCD3-201ENST00000262188 AMOTL2Q9Y2J4 779 aa38.59■■■■□ 3.77
SMARCD3-201ENST00000262188 WAPLQ7Z5K2 1190 aa38.57■■■■□ 3.76
SMARCD3-201ENST00000262188 PRAM1Q96QH2 718 aa38.56■■■■□ 3.76
SMARCD3-201ENST00000262188 ABCC11Q96J66 1382 aa38.56■■■■□ 3.76
SMARCD3-201ENST00000262188 PLEKHH1Q9ULM0 1364 aa38.55■■■■□ 3.76
SMARCD3-201ENST00000262188 EIF3AQ14152 1382 aaKnown RBP38.55■■■■□ 3.76
SMARCD3-201ENST00000262188 C11orf95C9JLR9 678 aaPredicted RBP38.53■■■■□ 3.76
SMARCD3-201ENST00000262188 ROBO2Q9HCK4 1378 aa38.53■■■■□ 3.76
SMARCD3-201ENST00000262188 TESK2Q96S53 571 aa38.53■■■■□ 3.76
SMARCD3-201ENST00000262188 KCNA6P17658 529 aa38.52■■■■□ 3.76
SMARCD3-201ENST00000262188 CENPJQ9HC77 1338 aaPredicted RBP38.52■■■■□ 3.76
SMARCD3-201ENST00000262188 CHD2O14647 1828 aaKnown RBP38.49■■■■□ 3.75
SMARCD3-201ENST00000262188 POGKQ9P215 609 aa38.49■■■■□ 3.75
SMARCD3-201ENST00000262188 KNDC1Q76NI1 1749 aa38.48■■■■□ 3.75
SMARCD3-201ENST00000262188 XRN1Q8IZH2 1706 aaKnown RBP38.48■■■■□ 3.75
SMARCD3-201ENST00000262188 TECPR2O15040 1411 aa38.47■■■■□ 3.75
SMARCD3-201ENST00000262188 PIK3R4Q99570 1358 aa38.47■■■■□ 3.75
SMARCD3-201ENST00000262188 QRICH2Q9H0J4 1663 aa38.47■■■■□ 3.75
SMARCD3-201ENST00000262188 CPS1P31327 1500 aa38.46■■■■□ 3.75
SMARCD3-201ENST00000262188 DLC1Q96QB1 1528 aa38.46■■■■□ 3.75
SMARCD3-201ENST00000262188 RBM33Q96EV2 1170 aaKnown RBP38.46■■■■□ 3.75
SMARCD3-201ENST00000262188 MINK1Q8N4C8 1332 aaPredicted RBP38.43■■■■□ 3.74
SMARCD3-201ENST00000262188 DISP3Q9P2K9 1392 aa38.42■■■■□ 3.74
SMARCD3-201ENST00000262188 POLR3GLQ9BT43 218 aa38.39■■■■□ 3.74
SMARCD3-201ENST00000262188 STRCP1A6NGW2 1772 aa38.39■■■■□ 3.74
SMARCD3-201ENST00000262188 WASHC2AQ641Q2 1341 aa38.38■■■■□ 3.73
SMARCD3-201ENST00000262188 FAM135BQ49AJ0 1406 aa38.37■■■■□ 3.73
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms