RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 VPS9D1Q9Y2B5 631 aa9.51□□□□□ -0.89
CCDC54-201ENST00000261058 GTF3C3Q9Y5Q9 886 aa9.51□□□□□ -0.89
CCDC54-201ENST00000261058 GOPCQ9HD26 462 aa9.5□□□□□ -0.89
CCDC54-201ENST00000261058 TK2O00142 265 aa9.49□□□□□ -0.89
CCDC54-201ENST00000261058 BHMG1C9JSJ3 638 aaPredicted RBP9.48□□□□□ -0.89
CCDC54-201ENST00000261058 MYT1LQ9UL68 1186 aa9.48□□□□□ -0.89
CCDC54-201ENST00000261058 SMAPO00193 183 aa9.48□□□□□ -0.89
CCDC54-201ENST00000261058 CD46P15529 392 aa9.45□□□□□ -0.9
CCDC54-201ENST00000261058 BEGAINQ9BUH8 593 aa9.45□□□□□ -0.9
CCDC54-201ENST00000261058 LSM11P83369 360 aaKnown RBP eCLIP9.44□□□□□ -0.9
CCDC54-201ENST00000261058 FAM98CQ17RN3 349 aaKnown RBP9.44□□□□□ -0.9
CCDC54-201ENST00000261058 LAPTM4BQ86VI4 370 aa9.44□□□□□ -0.9
CCDC54-201ENST00000261058 SH3D19Q5HYK7 790 aa9.43□□□□□ -0.9
CCDC54-201ENST00000261058 SULF1Q8IWU6 871 aa9.43□□□□□ -0.9
CCDC54-201ENST00000261058 HRO43593 1189 aa9.42□□□□□ -0.9
CCDC54-201ENST00000261058 SEPT9Q9UHD8 586 aaPredicted RBP9.42□□□□□ -0.9
CCDC54-201ENST00000261058 ADGRD1Q6QNK2 874 aa9.41□□□□□ -0.9
CCDC54-201ENST00000261058 NBPF3Q9H094 633 aa9.41□□□□□ -0.9
CCDC54-201ENST00000261058 ANKRD13DQ6ZTN6 518 aa9.4□□□□□ -0.9
CCDC54-201ENST00000261058 RSPH6AQ9H0K4 717 aa9.39□□□□□ -0.91
CCDC54-201ENST00000261058 SKIV2LQ15477 1246 aaKnown RBP9.39□□□□□ -0.91
CCDC54-201ENST00000261058 SWT1Q5T5J6 900 aaKnown RBP9.39□□□□□ -0.91
CCDC54-201ENST00000261058 MYSM1Q5VVJ2 828 aa9.39□□□□□ -0.91
CCDC54-201ENST00000261058 DDX11L8A8MPP1 907 aa9.38□□□□□ -0.91
CCDC54-201ENST00000261058 SLC10A3P09131 477 aa9.37□□□□□ -0.91
CCDC54-201ENST00000261058 DIXDC1Q155Q3 683 aa9.37□□□□□ -0.91
CCDC54-201ENST00000261058 TBC1D2Q9BYX2 928 aa9.37□□□□□ -0.91
CCDC54-201ENST00000261058 SPIRE2Q8WWL2 714 aa9.36□□□□□ -0.91
CCDC54-201ENST00000261058 ZFRQ96KR1 1074 aaKnown RBP9.36□□□□□ -0.91
CCDC54-201ENST00000261058 SAMD7Q7Z3H4 446 aa9.35□□□□□ -0.91
CCDC54-201ENST00000261058 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.35□□□□□ -0.91
CCDC54-201ENST00000261058 GCGRP47871 477 aa9.34□□□□□ -0.91
CCDC54-201ENST00000261058 GJA5P36382 358 aa9.33□□□□□ -0.92
CCDC54-201ENST00000261058 TUSC1Q2TAM9 212 aa9.33□□□□□ -0.92
CCDC54-201ENST00000261058 MRPL50Q8N5N7 158 aaKnown RBP9.33□□□□□ -0.92
CCDC54-201ENST00000261058 PCMTD1Q96MG8 357 aaPredicted RBP9.33□□□□□ -0.92
CCDC54-201ENST00000261058 TIMELESSQ9UNS1 1208 aa9.33□□□□□ -0.92
CCDC54-201ENST00000261058 SLF2Q8IX21 1173 aa9.32□□□□□ -0.92
CCDC54-201ENST00000261058 HDGFP51858 240 aaKnown RBP9.31□□□□□ -0.92
CCDC54-201ENST00000261058 RSPH4AQ5TD94 716 aa9.31□□□□□ -0.92
CCDC54-201ENST00000261058 ERICH6Q7L0X2 663 aa9.31□□□□□ -0.92
CCDC54-201ENST00000261058 RDH13Q8NBN7 331 aa9.31□□□□□ -0.92
CCDC54-201ENST00000261058 SPTLC1O15269 473 aa9.31□□□□□ -0.92
CCDC54-201ENST00000261058 CLK2P49760 499 aaKnown RBP9.31□□□□□ -0.92
CCDC54-201ENST00000261058 PROCA1Q8NCQ7 364 aaPredicted RBP9.31□□□□□ -0.92
CCDC54-201ENST00000261058 KDM4AO75164 1064 aa9.3□□□□□ -0.92
CCDC54-201ENST00000261058 USP46P62068 366 aa9.3□□□□□ -0.92
CCDC54-201ENST00000261058 RSBN1LQ6PCB5 846 aaPredicted RBP9.3□□□□□ -0.92
CCDC54-201ENST00000261058 LIMD1Q9UGP4 676 aa9.3□□□□□ -0.92
CCDC54-201ENST00000261058 MOXD2PA6NHM9 499 aa9.29□□□□□ -0.92
CCDC54-201ENST00000261058 NUTM1Q86Y26 1132 aa9.29□□□□□ -0.92
CCDC54-201ENST00000261058 POLR3EQ9NVU0 708 aa9.29□□□□□ -0.92
CCDC54-201ENST00000261058 SLC4A3P48751 1232 aa9.28□□□□□ -0.92
CCDC54-201ENST00000261058 RIC3Q7Z5B4 369 aa9.28□□□□□ -0.92
CCDC54-201ENST00000261058 SOWAHBA6NEL2 793 aa9.27□□□□□ -0.93
CCDC54-201ENST00000261058 HOXA2O43364 376 aa9.27□□□□□ -0.93
CCDC54-201ENST00000261058 PPP2R2DQ66LE6 453 aa9.27□□□□□ -0.93
CCDC54-201ENST00000261058 LRCH3Q96II8 777 aa9.27□□□□□ -0.93
CCDC54-201ENST00000261058 FBXO31Q5XUX0 539 aaPredicted RBP9.26□□□□□ -0.93
CCDC54-201ENST00000261058 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.26□□□□□ -0.93
CCDC54-201ENST00000261058 CFHP08603 1231 aa9.25□□□□□ -0.93
CCDC54-201ENST00000261058 ANKK1Q8NFD2 765 aa9.25□□□□□ -0.93
CCDC54-201ENST00000261058 NECTIN2Q92692 538 aa9.25□□□□□ -0.93
CCDC54-201ENST00000261058 NDUFV2P19404 249 aa9.24□□□□□ -0.93
CCDC54-201ENST00000261058 LILRB3O75022 631 aa9.22□□□□□ -0.93
CCDC54-201ENST00000261058 FUT2Q10981 343 aa9.22□□□□□ -0.93
CCDC54-201ENST00000261058 PRPF38BQ5VTL8 546 aaKnown RBP9.22□□□□□ -0.93
CCDC54-201ENST00000261058 PCDHB15Q9Y5E8 787 aa9.22□□□□□ -0.93
CCDC54-201ENST00000261058 ACTN4O43707 911 aaKnown RBP9.22□□□□□ -0.93
CCDC54-201ENST00000261058 HCSTQ9UBK5 93 aa9.22□□□□□ -0.93
CCDC54-201ENST00000261058 PCDHGC3Q9UN70 934 aa9.22□□□□□ -0.93
CCDC54-201ENST00000261058 ATP6V1AP38606 617 aa9.21□□□□□ -0.94
CCDC54-201ENST00000261058 FLIIQ13045 1269 aa9.21□□□□□ -0.94
CCDC54-201ENST00000261058 QPCTQ16769 361 aa9.21□□□□□ -0.94
CCDC54-201ENST00000261058 KMT5BQ4FZB7 885 aa9.21□□□□□ -0.94
CCDC54-201ENST00000261058 C14orf37Q86TY3 774 aa9.21□□□□□ -0.94
CCDC54-201ENST00000261058 WNT2BQ93097 391 aa9.21□□□□□ -0.94
CCDC54-201ENST00000261058 HLA-CQ95604 372 aa9.21□□□□□ -0.94
CCDC54-201ENST00000261058 STAC3Q96MF2 364 aa9.21□□□□□ -0.94
CCDC54-201ENST00000261058 GOLGA8CPA6NN73 597 aa9.2□□□□□ -0.94
CCDC54-201ENST00000261058 RNF40O75150 1001 aa9.2□□□□□ -0.94
CCDC54-201ENST00000261058 FDX1P10109 184 aa9.2□□□□□ -0.94
CCDC54-201ENST00000261058 RFC5P40937 340 aa9.2□□□□□ -0.94
CCDC54-201ENST00000261058 BCAMP50895 628 aa9.2□□□□□ -0.94
CCDC54-201ENST00000261058 TSR3Q9UJK0 312 aaKnown RBP9.2□□□□□ -0.94
CCDC54-201ENST00000261058 GRIPAP1Q4V328 841 aa9.19□□□□□ -0.94
CCDC54-201ENST00000261058 PRR14Q9BWN1 585 aa9.19□□□□□ -0.94
CCDC54-201ENST00000261058 HPS5Q9UPZ3 1129 aa9.19□□□□□ -0.94
CCDC54-201ENST00000261058 GUCA2AQ02747 115 aa9.18□□□□□ -0.94
CCDC54-201ENST00000261058 MCM6Q14566 821 aa9.18□□□□□ -0.94
CCDC54-201ENST00000261058 MORN1Q5T089 497 aa9.18□□□□□ -0.94
CCDC54-201ENST00000261058 THSD4Q6ZMP0 1018 aa9.18□□□□□ -0.94
CCDC54-201ENST00000261058 HRCP23327 699 aa9.17□□□□□ -0.94
CCDC54-201ENST00000261058 APLP1P51693 650 aa9.17□□□□□ -0.94
CCDC54-201ENST00000261058 PPP4CP60510 307 aa9.17□□□□□ -0.94
CCDC54-201ENST00000261058 BANK1Q8NDB2 785 aa9.17□□□□□ -0.94
CCDC54-201ENST00000261058 TMEM259Q4ZIN3 620 aa9.16□□□□□ -0.94
CCDC54-201ENST00000261058 RTL5Q5HYW3 569 aaPredicted RBP9.16□□□□□ -0.94
CCDC54-201ENST00000261058 ZBTB3Q9H5J0 574 aa9.16□□□□□ -0.94
CCDC54-201ENST00000261058 SOCS7O14512 581 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms