RNA–Protein interactions for RNA: ENST00000258781.10

CCM2-201, Transcript of CCM2 scaffold protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCM2, Length 1,894 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-201ENST00000258781 MADDQ8WXG6 1647 aa38.53■■■■□ 3.76
CCM2-201ENST00000258781 IFT172Q9UG01 1749 aa38.49■■■■□ 3.75
CCM2-201ENST00000258781 IDI1Q13907 227 aa38.48■■■■□ 3.75
CCM2-201ENST00000258781 C3P01024 1663 aa38.46■■■■□ 3.75
CCM2-201ENST00000258781 MYO5BQ9ULV0 1848 aa38.46■■■■□ 3.75
CCM2-201ENST00000258781 SLC52A1Q9NWF4 448 aa38.46■■■■□ 3.75
CCM2-201ENST00000258781 CHGAP10645 457 aaKnown RBP38.45■■■■□ 3.75
CCM2-201ENST00000258781 TMEM131LA2VDJ0 1609 aa38.41■■■■□ 3.74
CCM2-201ENST00000258781 PPLO60437 1756 aa38.4■■■■□ 3.74
CCM2-201ENST00000258781 ADAMTSL3P82987 1691 aa38.39■■■■□ 3.74
CCM2-201ENST00000258781 NBPF1Q3BBV0 1214 aa38.39■■■■□ 3.74
CCM2-201ENST00000258781 KIAA1210Q9ULL0 1709 aa38.38■■■■□ 3.74
CCM2-201ENST00000258781 ST20-MTHFSA0A0A6YYL1 179 aa38.38■■■■□ 3.73
CCM2-201ENST00000258781 RIMS1Q86UR5 1692 aaKnown RBP38.37■■■■□ 3.73
CCM2-201ENST00000258781 CEBPAP49715 358 aaPredicted RBP38.37■■■■□ 3.73
CCM2-201ENST00000258781 MYOM2P54296 1465 aa38.36■■■■□ 3.73
CCM2-201ENST00000258781 TNRQ92752 1358 aa38.31■■■■□ 3.72
CCM2-201ENST00000258781 NEXMIFQ5QGS0 1516 aa38.31■■■■□ 3.72
CCM2-201ENST00000258781 IQGAP1P46940 1657 aa38.3■■■■□ 3.72
CCM2-201ENST00000258781 ADGRF5Q8IZF2 1346 aa38.26■■■■□ 3.72
CCM2-201ENST00000258781 NRXN1Q9ULB1 1477 aa38.25■■■■□ 3.71
CCM2-201ENST00000258781 SCAF1Q9H7N4 1312 aaKnown RBP38.24■■■■□ 3.71
CCM2-201ENST00000258781 PLPPR3Q6T4P5 718 aa38.24■■■■□ 3.71
CCM2-201ENST00000258781 RPGRIP1LQ68CZ1 1315 aa38.23■■■■□ 3.71
CCM2-201ENST00000258781 A2ML1A8K2U0 1454 aa38.23■■■■□ 3.71
CCM2-201ENST00000258781 STAG3Q9UJ98 1225 aa38.18■■■■□ 3.7
CCM2-201ENST00000258781 UBR1Q8IWV7 1749 aa38.18■■■■□ 3.7
CCM2-201ENST00000258781 PRKRIP1Q9H875 184 aaPredicted RBP38.18■■■■□ 3.7
CCM2-201ENST00000258781 NUTM2DQ5VT03 806 aaPredicted RBP38.17■■■■□ 3.7
CCM2-201ENST00000258781 KDM5AP29375 1690 aaKnown RBP38.16■■■■□ 3.7
CCM2-201ENST00000258781 POLR3GLQ9BT43 218 aa38.15■■■■□ 3.7
CCM2-201ENST00000258781 PIK3C2GO75747 1445 aa38.15■■■■□ 3.7
CCM2-201ENST00000258781 SCAF11Q99590 1463 aaKnown RBP38.15■■■■□ 3.7
CCM2-201ENST00000258781 NLRP1Q9C000 1473 aa38.14■■■■□ 3.7
CCM2-201ENST00000258781 TESK2Q96S53 571 aa38.13■■■■□ 3.7
CCM2-201ENST00000258781 MYO3AQ8NEV4 1616 aa38.11■■■■□ 3.69
CCM2-201ENST00000258781 ZFYVE9O95405 1425 aa38.09■■■■□ 3.69
CCM2-201ENST00000258781 CFAP70Q5T0N1 1121 aa38.07■■■■□ 3.69
CCM2-201ENST00000258781 VGFO15240 615 aaPredicted RBP38.07■■■■□ 3.68
CCM2-201ENST00000258781 SETBP1Q9Y6X0 1596 aa38.04■■■■□ 3.68
CCM2-201ENST00000258781 RIMS2Q9UQ26 1411 aa38.04■■■■□ 3.68
CCM2-201ENST00000258781 EIF3AQ14152 1382 aaKnown RBP38.03■■■■□ 3.68
CCM2-201ENST00000258781 DISP3Q9P2K9 1392 aa38.03■■■■□ 3.68
CCM2-201ENST00000258781 TMF1P82094 1093 aa38.02■■■■□ 3.68
CCM2-201ENST00000258781 GTF3C3Q9Y5Q9 886 aa38.01■■■■□ 3.67
CCM2-201ENST00000258781 PTPRMP28827 1452 aa38■■■■□ 3.67
CCM2-201ENST00000258781 C14orf93Q9H972 538 aaKnown RBP37.97■■■■□ 3.67
CCM2-201ENST00000258781 TMEM2Q9UHN6 1383 aa37.95■■■■□ 3.67
CCM2-201ENST00000258781 SENP3Q9H4L4 574 aaPredicted RBP37.95■■■■□ 3.67
CCM2-201ENST00000258781 ADGRB1O14514 1584 aa37.95■■■■□ 3.67
CCM2-201ENST00000258781 CEP170BQ9Y4F5 1589 aaPredicted RBP37.95■■■■□ 3.67
CCM2-201ENST00000258781 SETD1BQ9UPS6 1966 aaKnown RBP37.94■■■■□ 3.66
CCM2-201ENST00000258781 KTN1Q86UP2 1357 aaKnown RBP37.91■■■■□ 3.66
CCM2-201ENST00000258781 ZNF142P52746 1687 aaPredicted RBP37.9■■■■□ 3.66
CCM2-201ENST00000258781 ASXL1Q8IXJ9 1541 aa37.88■■■■□ 3.65
CCM2-201ENST00000258781 NRXN3Q9Y4C0 1643 aa37.88■■■■□ 3.65
CCM2-201ENST00000258781 SLIT1O75093 1534 aa37.86■■■■□ 3.65
CCM2-201ENST00000258781 SLC24A1O60721 1099 aa37.86■■■■□ 3.65
CCM2-201ENST00000258781 ALKQ9UM73 1620 aa37.86■■■■□ 3.65
CCM2-201ENST00000258781 CDCA8Q53HL2 280 aa37.86■■■■□ 3.65
CCM2-201ENST00000258781 TMEM132EQ6IEE7 984 aa37.86■■■■□ 3.65
CCM2-201ENST00000258781 ARHGAP23Q9P227 1491 aa37.85■■■■□ 3.65
CCM2-201ENST00000258781 ABCF1Q8NE71 845 aaKnown RBP eCLIP37.85■■■■□ 3.65
CCM2-201ENST00000258781 SETD1AO15047 1707 aaKnown RBP37.85■■■■□ 3.65
CCM2-201ENST00000258781 CCDC184Q52MB2 194 aa37.84■■■■□ 3.65
CCM2-201ENST00000258781 MRS2Q9HD23 443 aa37.84■■■■□ 3.65
CCM2-201ENST00000258781 LTKP29376 864 aa37.8■■■■□ 3.64
CCM2-201ENST00000258781 SBNO2Q9Y2G9 1366 aa37.79■■■■□ 3.64
CCM2-201ENST00000258781 THEMISQ8N1K5 641 aaPredicted RBP37.79■■■■□ 3.64
CCM2-201ENST00000258781 HDGFP51858 240 aaKnown RBP37.77■■■■□ 3.64
CCM2-201ENST00000258781 RALBP1Q15311 655 aa37.77■■■■□ 3.64
CCM2-201ENST00000258781 PER1O15534 1290 aaPredicted RBP37.75■■■■□ 3.63
CCM2-201ENST00000258781 KDM4FA0A1W2PPD8 638 aa37.75■■■■□ 3.63
CCM2-201ENST00000258781 MYOM1P52179 1685 aa37.74■■■■□ 3.63
CCM2-201ENST00000258781 ARHGEF28Q8N1W1 1705 aaKnown RBP37.73■■■■□ 3.63
CCM2-201ENST00000258781 TXNDC2Q86VQ3 553 aa37.73■■■■□ 3.63
CCM2-201ENST00000258781 TRAK1Q9UPV9 953 aa37.71■■■■□ 3.63
CCM2-201ENST00000258781 PLEKHG1Q9ULL1 1385 aa37.7■■■■□ 3.63
CCM2-201ENST00000258781 QRICH2Q9H0J4 1663 aa37.7■■■■□ 3.63
CCM2-201ENST00000258781 PARD3Q8TEW0 1356 aa37.69■■■■□ 3.62
CCM2-201ENST00000258781 PANK3Q9H999 370 aa37.69■■■■□ 3.62
CCM2-201ENST00000258781 MYBBP1AQ9BQG0 1328 aaKnown RBP37.68■■■■□ 3.62
CCM2-201ENST00000258781 EID1Q9Y6B2 187 aa37.68■■■■□ 3.62
CCM2-201ENST00000258781 CENPJQ9HC77 1338 aaPredicted RBP37.66■■■■□ 3.62
CCM2-201ENST00000258781 ADAMTS13Q76LX8 1427 aa37.66■■■■□ 3.62
CCM2-201ENST00000258781 HNRNPUQ00839 825 aaKnown RBP eCLIP37.66■■■■□ 3.62
CCM2-201ENST00000258781 YTHDC2Q9H6S0 1430 aaKnown RBP37.66■■■■□ 3.62
CCM2-201ENST00000258781 BRD4O60885 1362 aaPredicted RBP37.64■■■■□ 3.62
CCM2-201ENST00000258781 CNGB1Q14028 1251 aaPredicted RBP37.63■■■■□ 3.61
CCM2-201ENST00000258781 METP08581 1390 aa37.62■■■■□ 3.61
CCM2-201ENST00000258781 FAM9BQ8IZU0 186 aa37.62■■■■□ 3.61
CCM2-201ENST00000258781 BCANQ96GW7 911 aa37.61■■■■□ 3.61
CCM2-201ENST00000258781 STK26Q9P289 416 aa37.61■■■■□ 3.61
CCM2-201ENST00000258781 MED14O60244 1454 aa37.58■■■■□ 3.61
CCM2-201ENST00000258781 TMC1Q8TDI8 760 aa37.54■■■■□ 3.6
CCM2-201ENST00000258781 LRPPRCP42704 1394 aaKnown RBP37.53■■■■□ 3.6
CCM2-201ENST00000258781 SLC26A8Q96RN1 970 aa37.52■■■■□ 3.6
CCM2-201ENST00000258781 NLRP13Q86W25 1043 aa37.52■■■■□ 3.6
CCM2-201ENST00000258781 KNDC1Q76NI1 1749 aa37.5■■■■□ 3.59
CCM2-201ENST00000258781 ANKLE2Q86XL3 938 aa37.5■■■■□ 3.59
Retrieved 100 of 20,778 RNA–protein pairs in 161.8 ms