RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 YEATS2Q9ULM3 1422 aa15.25■□□□□ 0.03
VPS4A-201ENST00000254950 TNRQ92752 1358 aa15.25■□□□□ 0.03
VPS4A-201ENST00000254950 CABP2Q9NPB3 220 aa15.25■□□□□ 0.03
VPS4A-201ENST00000254950 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.25■□□□□ 0.03
VPS4A-201ENST00000254950 ABCA9Q8IUA7 1624 aa15.24■□□□□ 0.03
VPS4A-201ENST00000254950 PAK3O75914 559 aaPredicted RBP15.24■□□□□ 0.03
VPS4A-201ENST00000254950 ZFYVE16Q7Z3T8 1539 aa15.24■□□□□ 0.03
VPS4A-201ENST00000254950 RALGAPBQ86X10 1494 aa15.24■□□□□ 0.03
VPS4A-201ENST00000254950 PRAG1Q86YV5 1406 aa15.24■□□□□ 0.03
VPS4A-201ENST00000254950 ERICH6Q7L0X2 663 aa15.24■□□□□ 0.03
VPS4A-201ENST00000254950 ANKLE2Q86XL3 938 aa15.24■□□□□ 0.03
VPS4A-201ENST00000254950 C14orf93Q9H972 538 aaKnown RBP15.24■□□□□ 0.03
VPS4A-201ENST00000254950 CDC42BPBQ9Y5S2 1711 aa15.23■□□□□ 0.03
VPS4A-201ENST00000254950 SLC26A8Q96RN1 970 aa15.23■□□□□ 0.03
VPS4A-201ENST00000254950 C11orf95C9JLR9 678 aaPredicted RBP15.22■□□□□ 0.03
VPS4A-201ENST00000254950 U2AF1L5P0DN76 240 aaPredicted RBP15.22■□□□□ 0.03
VPS4A-201ENST00000254950 U2AF1Q01081 240 aaKnown RBP eCLIP15.22■□□□□ 0.03
VPS4A-201ENST00000254950 RIMBP3CA6NJZ7 1639 aa15.22■□□□□ 0.03
VPS4A-201ENST00000254950 RIMBP3BA6NNM3 1639 aa15.22■□□□□ 0.03
VPS4A-201ENST00000254950 RIMBP3Q9UFD9 1639 aa15.22■□□□□ 0.03
VPS4A-201ENST00000254950 MAGI2Q86UL8 1455 aa15.22■□□□□ 0.03
VPS4A-201ENST00000254950 SCAF11Q99590 1463 aaKnown RBP15.21■□□□□ 0.03
VPS4A-201ENST00000254950 SUPT16HQ9Y5B9 1047 aaKnown RBP15.21■□□□□ 0.03
VPS4A-201ENST00000254950 PLXNC1O60486 1568 aa15.2■□□□□ 0.02
VPS4A-201ENST00000254950 IRX6P78412 446 aaPredicted RBP15.19■□□□□ 0.02
VPS4A-201ENST00000254950 ZMYM3Q14202 1370 aa15.19■□□□□ 0.02
VPS4A-201ENST00000254950 HECW2Q9P2P5 1572 aa15.19■□□□□ 0.02
VPS4A-201ENST00000254950 SLC12A5Q9H2X9 1139 aa15.18■□□□□ 0.02
VPS4A-201ENST00000254950 TSPOAP1O95153 1857 aa15.18■□□□□ 0.02
VPS4A-201ENST00000254950 COG3Q96JB2 828 aa15.18■□□□□ 0.02
VPS4A-201ENST00000254950 ZBTB47Q9UFB7 747 aaPredicted RBP15.17■□□□□ 0.02
VPS4A-201ENST00000254950 CDK19Q9BWU1 502 aa15.16■□□□□ 0.02
VPS4A-201ENST00000254950 KDM5DQ9BY66 1539 aa15.16■□□□□ 0.02
VPS4A-201ENST00000254950 NPATQ14207 1427 aa15.16■□□□□ 0.02
VPS4A-201ENST00000254950 UHRF1BP1Q6BDS2 1440 aa15.16■□□□□ 0.02
VPS4A-201ENST00000254950 CCDC136Q96JN2 1154 aa15.16■□□□□ 0.02
VPS4A-201ENST00000254950 ATAD2Q6PL18 1390 aa15.15■□□□□ 0.02
VPS4A-201ENST00000254950 CROCC2H7BZ55 1655 aa15.14■□□□□ 0.01
VPS4A-201ENST00000254950 BRD4O60885 1362 aaPredicted RBP15.14■□□□□ 0.01
VPS4A-201ENST00000254950 EIF2AK4Q9P2K8 1649 aaKnown RBP15.13■□□□□ 0.01
VPS4A-201ENST00000254950 GGNBP2Q9H3C7 697 aa15.12■□□□□ 0.01
VPS4A-201ENST00000254950 RIMS2Q9UQ26 1411 aa15.12■□□□□ 0.01
VPS4A-201ENST00000254950 LAS1LQ9Y4W2 734 aaKnown RBP15.12■□□□□ 0.01
VPS4A-201ENST00000254950 WAPLQ7Z5K2 1190 aa15.11■□□□□ 0.01
VPS4A-201ENST00000254950 DNAJC5Q9H3Z4 198 aa15.11■□□□□ 0.01
VPS4A-201ENST00000254950 CABP1Q9NZU7 370 aa15.11■□□□□ 0.01
VPS4A-201ENST00000254950 AMPHP49418 695 aa15.11■□□□□ 0.01
VPS4A-201ENST00000254950 CCDC146Q8IYE0 955 aa15.11■□□□□ 0.01
VPS4A-201ENST00000254950 PDE3BQ13370 1112 aa15.11■□□□□ 0.01
VPS4A-201ENST00000254950 PROSER2Q86WR7 435 aaPredicted RBP15.11■□□□□ 0.01
VPS4A-201ENST00000254950 PPP2R1AP30153 589 aa15.08■□□□□ 0.01
VPS4A-201ENST00000254950 DAXXQ9UER7 740 aaPredicted RBP15.08■□□□□ 0.01
VPS4A-201ENST00000254950 DISP3Q9P2K9 1392 aa15.08■□□□□ 0
VPS4A-201ENST00000254950 ATF3P18847 181 aa15.08■□□□□ 0
VPS4A-201ENST00000254950 ZBED9Q6R2W3 1325 aa15.08■□□□□ 0
VPS4A-201ENST00000254950 CFAP65Q6ZU64 1925 aaKnown RBP15.08■□□□□ 0
VPS4A-201ENST00000254950 PSME1Q06323 249 aa15.08■□□□□ 0
VPS4A-201ENST00000254950 CCDC61Q9Y6R9 512 aa15.08■□□□□ 0
VPS4A-201ENST00000254950 ZNF692Q9BU19 519 aaPredicted RBP15.07■□□□□ 0
VPS4A-201ENST00000254950 AMOTL2Q9Y2J4 779 aa15.07■□□□□ 0
VPS4A-201ENST00000254950 PTPRTO14522 1441 aa15.07■□□□□ 0
VPS4A-201ENST00000254950 GOLGA2Q08379 1002 aa15.07■□□□□ 0
VPS4A-201ENST00000254950 IQGAP3Q86VI3 1631 aa15.06■□□□□ 0
VPS4A-201ENST00000254950 TESK2Q96S53 571 aa15.06■□□□□ 0
VPS4A-201ENST00000254950 TRPM2O94759 1503 aa15.06■□□□□ 0
VPS4A-201ENST00000254950 DIAPH1O60610 1272 aaKnown RBP15.06■□□□□ 0
VPS4A-201ENST00000254950 CALD1Q05682 793 aaKnown RBP15.06■□□□□ 0
VPS4A-201ENST00000254950 PLA2R1Q13018 1463 aa15.06■□□□□ 0
VPS4A-201ENST00000254950 UNC13BO14795 1591 aa15.06■□□□□ 0
VPS4A-201ENST00000254950 NUDT16Q96DE0 195 aaKnown RBP15.05■□□□□ 0
VPS4A-201ENST00000254950 MTHFSP49914 203 aa15.05■□□□□ -0
VPS4A-201ENST00000254950 RTF1Q92541 710 aaKnown RBP15.04■□□□□ -0
VPS4A-201ENST00000254950 SPATA31E1Q6ZUB1 1445 aa15.04■□□□□ -0
VPS4A-201ENST00000254950 GPRASP1Q5JY77 1395 aa15.04■□□□□ -0
VPS4A-201ENST00000254950 PMFBP1Q8TBY8 1022 aa15.04■□□□□ -0
VPS4A-201ENST00000254950 NSD3Q9BZ95 1437 aa15.03■□□□□ -0
VPS4A-201ENST00000254950 TET3O43151 1660 aa15.03■□□□□ -0
VPS4A-201ENST00000254950 NGEFQ8N5V2 710 aa15.03■□□□□ -0
VPS4A-201ENST00000254950 MYH16Q9H6N6 1097 aa15.03■□□□□ -0
VPS4A-201ENST00000254950 RCAN3Q9UKA8 241 aa15.03■□□□□ -0
VPS4A-201ENST00000254950 WASLO00401 505 aaPredicted RBP15.03■□□□□ -0
VPS4A-201ENST00000254950 ABCC3O15438 1527 aa15.03■□□□□ -0
VPS4A-201ENST00000254950 APAF1O14727 1248 aa15.02■□□□□ -0
VPS4A-201ENST00000254950 BCL11AQ9H165 835 aa15.02■□□□□ -0
VPS4A-201ENST00000254950 GLI2P10070 1586 aa15.02□□□□□ -0.01
VPS4A-201ENST00000254950 CSB-PGBD3P0DP91 1061 aa15.02□□□□□ -0.01
VPS4A-201ENST00000254950 FRAT1Q92837 279 aaPredicted RBP15.02□□□□□ -0.01
VPS4A-201ENST00000254950 LTV1Q96GA3 475 aaPredicted RBP15.01□□□□□ -0.01
VPS4A-201ENST00000254950 PRDM15P57071 1507 aaPredicted RBP15.01□□□□□ -0.01
VPS4A-201ENST00000254950 EFCAB6Q5THR3 1501 aa15.01□□□□□ -0.01
VPS4A-201ENST00000254950 NLRP6P59044 892 aa15.01□□□□□ -0.01
VPS4A-201ENST00000254950 PNISRQ8TF01 805 aaKnown RBP15.01□□□□□ -0.01
VPS4A-201ENST00000254950 ESCO1Q5FWF5 840 aa15.01□□□□□ -0.01
VPS4A-201ENST00000254950 FTSJ3Q8IY81 847 aaKnown RBP15.01□□□□□ -0.01
VPS4A-201ENST00000254950 INO80Q9ULG1 1556 aaPredicted RBP15.01□□□□□ -0.01
VPS4A-201ENST00000254950 LMOD3Q0VAK6 560 aa15□□□□□ -0.01
VPS4A-201ENST00000254950 CCDC184Q52MB2 194 aa15□□□□□ -0.01
VPS4A-201ENST00000254950 ARHGAP31Q2M1Z3 1444 aa15□□□□□ -0.01
VPS4A-201ENST00000254950 PPP4R2Q9NY27 417 aa15□□□□□ -0.01
VPS4A-201ENST00000254950 RRP7AQ9Y3A4 280 aaKnown RBP15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms