RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 LTBP4Q8N2S1 1624 aa12.35□□□□□ -0.43
VPS4B-201ENST00000238497 DHX57Q6P158 1386 aaKnown RBP12.35□□□□□ -0.43
VPS4B-201ENST00000238497 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.35□□□□□ -0.43
VPS4B-201ENST00000238497 VWDEQ8N2E2 1590 aa12.35□□□□□ -0.43
VPS4B-201ENST00000238497 RIMS2Q9UQ26 1411 aa12.34□□□□□ -0.43
VPS4B-201ENST00000238497 RPRD2Q5VT52 1461 aaKnown RBP12.34□□□□□ -0.43
VPS4B-201ENST00000238497 RGL3Q3MIN7 710 aa12.34□□□□□ -0.43
VPS4B-201ENST00000238497 NEURL4Q96JN8 1562 aa12.34□□□□□ -0.43
VPS4B-201ENST00000238497 SYNMO15061 1565 aa12.33□□□□□ -0.44
VPS4B-201ENST00000238497 CNGB1Q14028 1251 aaPredicted RBP12.33□□□□□ -0.44
VPS4B-201ENST00000238497 UBR1Q8IWV7 1749 aa12.32□□□□□ -0.44
VPS4B-201ENST00000238497 HFM1A2PYH4 1435 aa12.32□□□□□ -0.44
VPS4B-201ENST00000238497 TET3O43151 1660 aa12.32□□□□□ -0.44
VPS4B-201ENST00000238497 POLR1AO95602 1720 aaPredicted RBP12.32□□□□□ -0.44
VPS4B-201ENST00000238497 GTF3C3Q9Y5Q9 886 aa12.32□□□□□ -0.44
VPS4B-201ENST00000238497 MED14O60244 1454 aa12.31□□□□□ -0.44
VPS4B-201ENST00000238497 UNC13BO14795 1591 aa12.31□□□□□ -0.44
VPS4B-201ENST00000238497 KCNA6P17658 529 aa12.31□□□□□ -0.44
VPS4B-201ENST00000238497 IQGAP1P46940 1657 aa12.3□□□□□ -0.44
VPS4B-201ENST00000238497 MPHOSPH9Q99550 1183 aa12.3□□□□□ -0.44
VPS4B-201ENST00000238497 ARHGAP23Q9P227 1491 aa12.3□□□□□ -0.44
VPS4B-201ENST00000238497 ADGRB3O60242 1522 aa12.29□□□□□ -0.44
VPS4B-201ENST00000238497 ACIN1Q9UKV3 1341 aaKnown RBP12.29□□□□□ -0.44
VPS4B-201ENST00000238497 SLIT1O75093 1534 aa12.29□□□□□ -0.44
VPS4B-201ENST00000238497 HSPA1LP34931 641 aa12.29□□□□□ -0.44
VPS4B-201ENST00000238497 DISP3Q9P2K9 1392 aa12.29□□□□□ -0.44
VPS4B-201ENST00000238497 TMEM94Q12767 1356 aa12.29□□□□□ -0.44
VPS4B-201ENST00000238497 DDX10Q13206 875 aaKnown RBP12.28□□□□□ -0.44
VPS4B-201ENST00000238497 E9PCH4 1651 aa12.28□□□□□ -0.44
VPS4B-201ENST00000238497 CPS1P31327 1500 aa12.28□□□□□ -0.44
VPS4B-201ENST00000238497 IQGAP3Q86VI3 1631 aa12.28□□□□□ -0.44
VPS4B-201ENST00000238497 GCC2Q8IWJ2 1684 aa12.26□□□□□ -0.45
VPS4B-201ENST00000238497 TBX22Q9Y458 520 aa12.26□□□□□ -0.45
VPS4B-201ENST00000238497 PLEKHG1Q9ULL1 1385 aa12.26□□□□□ -0.45
VPS4B-201ENST00000238497 SETD5Q9C0A6 1442 aa12.26□□□□□ -0.45
VPS4B-201ENST00000238497 AMOTL2Q9Y2J4 779 aa12.26□□□□□ -0.45
VPS4B-201ENST00000238497 LRRC7Q96NW7 1537 aa12.25□□□□□ -0.45
VPS4B-201ENST00000238497 IQSEC2Q5JU85 1478 aa12.24□□□□□ -0.45
VPS4B-201ENST00000238497 VGFO15240 615 aaPredicted RBP12.24□□□□□ -0.45
VPS4B-201ENST00000238497 MSH6P52701 1360 aa12.23□□□□□ -0.45
VPS4B-201ENST00000238497 ZFYVE9O95405 1425 aa12.23□□□□□ -0.45
VPS4B-201ENST00000238497 ATF3P18847 181 aa12.23□□□□□ -0.45
VPS4B-201ENST00000238497 POLR3GLQ9BT43 218 aa12.23□□□□□ -0.45
VPS4B-201ENST00000238497 CCDC144AA2RUR9 1427 aa12.23□□□□□ -0.45
VPS4B-201ENST00000238497 MYO5BQ9ULV0 1848 aa12.22□□□□□ -0.45
VPS4B-201ENST00000238497 STK26Q9P289 416 aa12.22□□□□□ -0.45
VPS4B-201ENST00000238497 PHF23Q9BUL5 403 aaPredicted RBP12.21□□□□□ -0.45
VPS4B-201ENST00000238497 TMEM131LA2VDJ0 1609 aa12.21□□□□□ -0.45
VPS4B-201ENST00000238497 KDM2AQ9Y2K7 1162 aa12.2□□□□□ -0.46
VPS4B-201ENST00000238497 SLAIN2Q9P270 581 aa12.19□□□□□ -0.46
VPS4B-201ENST00000238497 SPHKAPQ2M3C7 1700 aa12.18□□□□□ -0.46
VPS4B-201ENST00000238497 ADAMTS13Q76LX8 1427 aa12.18□□□□□ -0.46
VPS4B-201ENST00000238497 TONSLQ96HA7 1378 aa12.18□□□□□ -0.46
VPS4B-201ENST00000238497 STRCP1A6NGW2 1772 aa12.17□□□□□ -0.46
VPS4B-201ENST00000238497 C19orf44Q9H6X5 657 aa12.17□□□□□ -0.46
VPS4B-201ENST00000238497 METP08581 1390 aa12.17□□□□□ -0.46
VPS4B-201ENST00000238497 CADPS2Q86UW7 1296 aa12.17□□□□□ -0.46
VPS4B-201ENST00000238497 CLTCL1P53675 1640 aa12.16□□□□□ -0.46
VPS4B-201ENST00000238497 TRPM2O94759 1503 aa12.16□□□□□ -0.46
VPS4B-201ENST00000238497 TMEM132EQ6IEE7 984 aa12.16□□□□□ -0.46
VPS4B-201ENST00000238497 ADGRF5Q8IZF2 1346 aa12.16□□□□□ -0.46
VPS4B-201ENST00000238497 CLSPNQ9HAW4 1339 aa12.16□□□□□ -0.46
VPS4B-201ENST00000238497 KDM5AP29375 1690 aaKnown RBP12.16□□□□□ -0.46
VPS4B-201ENST00000238497 RPGRIP1LQ68CZ1 1315 aa12.15□□□□□ -0.46
VPS4B-201ENST00000238497 NUTM2FA1L443 756 aa12.15□□□□□ -0.46
VPS4B-201ENST00000238497 SAFB2Q14151 953 aaKnown RBP eCLIP12.14□□□□□ -0.47
VPS4B-201ENST00000238497 PIK3R4Q99570 1358 aa12.13□□□□□ -0.47
VPS4B-201ENST00000238497 NKTRP30414 1462 aaKnown RBP12.13□□□□□ -0.47
VPS4B-201ENST00000238497 DCAF11Q8TEB1 546 aa12.13□□□□□ -0.47
VPS4B-201ENST00000238497 PTPRUQ92729 1446 aa12.13□□□□□ -0.47
VPS4B-201ENST00000238497 KIF1BO60333 1816 aa12.12□□□□□ -0.47
VPS4B-201ENST00000238497 ILDR2Q71H61 639 aa12.11□□□□□ -0.47
VPS4B-201ENST00000238497 CFAP70Q5T0N1 1121 aa12.11□□□□□ -0.47
VPS4B-201ENST00000238497 WAPLQ7Z5K2 1190 aa12.1□□□□□ -0.47
VPS4B-201ENST00000238497 NUTM2BA6NNL0 878 aaPredicted RBP12.09□□□□□ -0.47
VPS4B-201ENST00000238497 NUTM2EB1AL46 878 aaPredicted RBP12.09□□□□□ -0.47
VPS4B-201ENST00000238497 PLEKHG5O94827 1062 aa12.09□□□□□ -0.47
VPS4B-201ENST00000238497 NUTM2AQ8IVF1 878 aaPredicted RBP12.09□□□□□ -0.47
VPS4B-201ENST00000238497 ANKRD30BQ9BXX2 1392 aa12.09□□□□□ -0.47
VPS4B-201ENST00000238497 NEXMIFQ5QGS0 1516 aa12.09□□□□□ -0.47
VPS4B-201ENST00000238497 DDX17Q92841 729 aaKnown RBP12.09□□□□□ -0.47
VPS4B-201ENST00000238497 MEX3CQ5U5Q3 659 aaKnown RBP12.09□□□□□ -0.47
VPS4B-201ENST00000238497 FAM135BQ49AJ0 1406 aa12.08□□□□□ -0.48
VPS4B-201ENST00000238497 POGKQ9P215 609 aa12.08□□□□□ -0.48
VPS4B-201ENST00000238497 ROBO2Q9HCK4 1378 aa12.07□□□□□ -0.48
VPS4B-201ENST00000238497 BRINP3Q76B58 766 aa12.06□□□□□ -0.48
VPS4B-201ENST00000238497 CHD2O14647 1828 aaKnown RBP12.06□□□□□ -0.48
VPS4B-201ENST00000238497 DIP2AQ14689 1571 aa12.06□□□□□ -0.48
VPS4B-201ENST00000238497 ESCO1Q5FWF5 840 aa12.06□□□□□ -0.48
VPS4B-201ENST00000238497 TRAK1Q9UPV9 953 aa12.06□□□□□ -0.48
VPS4B-201ENST00000238497 ALKQ9UM73 1620 aa12.06□□□□□ -0.48
VPS4B-201ENST00000238497 SPATA31E1Q6ZUB1 1445 aa12.05□□□□□ -0.48
VPS4B-201ENST00000238497 SENP3-EIF4A1A0A087X0R7 540 aa12.05□□□□□ -0.48
VPS4B-201ENST00000238497 ORAI2Q96SN7 254 aa12.05□□□□□ -0.48
VPS4B-201ENST00000238497 NWD1Q149M9 1564 aa12.05□□□□□ -0.48
VPS4B-201ENST00000238497 XPCQ01831 940 aaPredicted RBP12.04□□□□□ -0.48
VPS4B-201ENST00000238497 SETBP1Q9Y6X0 1596 aa12.04□□□□□ -0.48
VPS4B-201ENST00000238497 ANP32CO43423 234 aa12.04□□□□□ -0.48
VPS4B-201ENST00000238497 XIRP1Q702N8 1843 aaKnown RBP12.03□□□□□ -0.48
VPS4B-201ENST00000238497 NCOA3Q9Y6Q9 1424 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms