RNA–Protein interactions for RNA: ENST00000234420.9

MSH6-201, Transcript of mutS homolog 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH6, Length 7,476 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-201ENST00000234420 ZNF526Q8TF50 670 aaPredicted RBP13.58□□□□□ -0.24
MSH6-201ENST00000234420 TSPYL1Q9H0U9 437 aa13.58□□□□□ -0.24
MSH6-201ENST00000234420 MTERF4Q7Z6M4 381 aaKnown RBP13.58□□□□□ -0.24
MSH6-201ENST00000234420 RBM25P49756 843 aaKnown RBP13.57□□□□□ -0.24
MSH6-201ENST00000234420 ATF3P18847 181 aa13.57□□□□□ -0.24
MSH6-201ENST00000234420 TTC5Q8N0Z6 440 aa13.57□□□□□ -0.24
MSH6-201ENST00000234420 H3BQV1 296 aa13.57□□□□□ -0.24
MSH6-201ENST00000234420 IFFO2Q5TF58 517 aa13.57□□□□□ -0.24
MSH6-201ENST00000234420 IL27Q8NEV9 243 aa13.57□□□□□ -0.24
MSH6-201ENST00000234420 TPM1P09493 284 aa13.56□□□□□ -0.24
MSH6-201ENST00000234420 MNS1Q8NEH6 495 aa13.56□□□□□ -0.24
MSH6-201ENST00000234420 RWDD1Q9H446 243 aaPredicted RBP13.56□□□□□ -0.24
MSH6-201ENST00000234420 SKOR2Q2VWA4 1001 aaPredicted RBP13.56□□□□□ -0.24
MSH6-201ENST00000234420 TMEM87AQ8NBN3 555 aa13.56□□□□□ -0.24
MSH6-201ENST00000234420 IFT57Q9NWB7 429 aa13.56□□□□□ -0.24
MSH6-201ENST00000234420 DYDC1Q8WWB3 177 aa13.56□□□□□ -0.24
MSH6-201ENST00000234420 RCAN3Q9UKA8 241 aa13.56□□□□□ -0.24
MSH6-201ENST00000234420 ELL2O00472 640 aaPredicted RBP13.55□□□□□ -0.24
MSH6-201ENST00000234420 ACBD3Q9H3P7 528 aa13.55□□□□□ -0.24
MSH6-201ENST00000234420 KIF3AQ9Y496 699 aa13.55□□□□□ -0.24
MSH6-201ENST00000234420 KIF16BQ96L93 1317 aa13.55□□□□□ -0.24
MSH6-201ENST00000234420 TTC16Q8NEE8 873 aa13.54□□□□□ -0.24
MSH6-201ENST00000234420 CT47A1Q5JQC4 288 aaPredicted RBP13.54□□□□□ -0.24
MSH6-201ENST00000234420 CDR1P51861 262 aa13.54□□□□□ -0.24
MSH6-201ENST00000234420 LEKR1Q6ZMV7 388 aa13.54□□□□□ -0.24
MSH6-201ENST00000234420 TTLL12Q14166 644 aaPredicted RBP13.53□□□□□ -0.24
MSH6-201ENST00000234420 DCTN1Q14203 1278 aa13.53□□□□□ -0.24
MSH6-201ENST00000234420 ST18O60284 1047 aa13.53□□□□□ -0.24
MSH6-201ENST00000234420 TPM2P07951 284 aa13.52□□□□□ -0.24
MSH6-201ENST00000234420 WASHC2CQ9Y4E1 1318 aa13.52□□□□□ -0.25
MSH6-201ENST00000234420 NAP1L1P55209 391 aaKnown RBP13.52□□□□□ -0.25
MSH6-201ENST00000234420 AIMP1Q12904 312 aaKnown RBP13.52□□□□□ -0.25
MSH6-201ENST00000234420 TAF3Q5VWG9 929 aa13.52□□□□□ -0.25
MSH6-201ENST00000234420 NFXL1Q6ZNB6 911 aa13.52□□□□□ -0.25
MSH6-201ENST00000234420 BRPF3Q9ULD4 1205 aa13.51□□□□□ -0.25
MSH6-201ENST00000234420 WWC3Q9ULE0 1092 aa13.51□□□□□ -0.25
MSH6-201ENST00000234420 DIAPH3Q9NSV4 1193 aa13.51□□□□□ -0.25
MSH6-201ENST00000234420 SIN3AQ96ST3 1273 aa13.51□□□□□ -0.25
MSH6-201ENST00000234420 PRDM2Q13029 1718 aa13.5□□□□□ -0.25
MSH6-201ENST00000234420 DEF6Q9H4E7 631 aa13.5□□□□□ -0.25
MSH6-201ENST00000234420 IPO7O95373 1038 aaKnown RBP13.5□□□□□ -0.25
MSH6-201ENST00000234420 NEFHP12036 1026 aa13.5□□□□□ -0.25
MSH6-201ENST00000234420 SYNE3Q6ZMZ3 975 aa13.5□□□□□ -0.25
MSH6-201ENST00000234420 CLUAP1Q96AJ1 413 aa13.5□□□□□ -0.25
MSH6-201ENST00000234420 KIF3BO15066 747 aa13.49□□□□□ -0.25
MSH6-201ENST00000234420 FAM184AQ8NB25 1140 aa13.49□□□□□ -0.25
MSH6-201ENST00000234420 RRP7AQ9Y3A4 280 aaKnown RBP13.49□□□□□ -0.25
MSH6-201ENST00000234420 ZNF219Q9P2Y4 722 aaPredicted RBP13.49□□□□□ -0.25
MSH6-201ENST00000234420 MATR3P43243 847 aaKnown RBP eCLIP13.49□□□□□ -0.25
MSH6-201ENST00000234420 WDR78Q5VTH9 848 aa13.49□□□□□ -0.25
MSH6-201ENST00000234420 PMFBP1Q8TBY8 1022 aa13.49□□□□□ -0.25
MSH6-201ENST00000234420 TRAK1Q9UPV9 953 aa13.49□□□□□ -0.25
MSH6-201ENST00000234420 RSF1Q96T23 1441 aaPredicted RBP13.49□□□□□ -0.25
MSH6-201ENST00000234420 SMC4Q9NTJ3 1288 aa13.48□□□□□ -0.25
MSH6-201ENST00000234420 ERICH4A6NGS2 130 aa13.48□□□□□ -0.25
MSH6-201ENST00000234420 EPS15P42566 896 aa13.47□□□□□ -0.25
MSH6-201ENST00000234420 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.47□□□□□ -0.25
MSH6-201ENST00000234420 RBM42Q9BTD8 480 aaKnown RBP13.47□□□□□ -0.25
MSH6-201ENST00000234420 IPO8O15397 1037 aaKnown RBP13.47□□□□□ -0.25
MSH6-201ENST00000234420 GPATCH11Q8N954 259 aa13.47□□□□□ -0.25
MSH6-201ENST00000234420 PDE4AP27815 886 aa13.47□□□□□ -0.25
MSH6-201ENST00000234420 HSP90AB2PQ58FF8 381 aa13.47□□□□□ -0.25
MSH6-201ENST00000234420 C9orf78Q9NZ63 289 aaPredicted RBP13.46□□□□□ -0.25
MSH6-201ENST00000234420 AXDND1Q5T1B0 1012 aaPredicted RBP13.46□□□□□ -0.26
MSH6-201ENST00000234420 PSMD1Q99460 953 aa13.45□□□□□ -0.26
MSH6-201ENST00000234420 CENPHQ9H3R5 247 aa13.45□□□□□ -0.26
MSH6-201ENST00000234420 CCNB3Q8WWL7 1395 aa13.45□□□□□ -0.26
MSH6-201ENST00000234420 RSPH4AQ5TD94 716 aa13.45□□□□□ -0.26
MSH6-201ENST00000234420 MPHOSPH10O00566 681 aaKnown RBP13.44□□□□□ -0.26
MSH6-201ENST00000234420 TEFQ10587 303 aa13.44□□□□□ -0.26
MSH6-201ENST00000234420 CCER2I3L3R5 266 aa13.44□□□□□ -0.26
MSH6-201ENST00000234420 PRDM10Q9NQV6 1147 aa13.44□□□□□ -0.26
MSH6-201ENST00000234420 KIAA0754O94854 1291 aa13.44□□□□□ -0.26
MSH6-201ENST00000234420 HNRNPMP52272 730 aaKnown RBP eCLIP13.43□□□□□ -0.26
MSH6-201ENST00000234420 TNNT1P13805 278 aa13.43□□□□□ -0.26
MSH6-201ENST00000234420 TTLL5Q6EMB2 1281 aa13.43□□□□□ -0.26
MSH6-201ENST00000234420 GIMAP7Q8NHV1 300 aa13.43□□□□□ -0.26
MSH6-201ENST00000234420 C16orf71Q8IYS4 520 aaPredicted RBP13.43□□□□□ -0.26
MSH6-201ENST00000234420 CLIP1P30622 1438 aa13.43□□□□□ -0.26
MSH6-201ENST00000234420 ROCK2O75116 1388 aaKnown RBP13.42□□□□□ -0.26
MSH6-201ENST00000234420 TRIM29Q14134 588 aa13.42□□□□□ -0.26
MSH6-201ENST00000234420 BICDL1Q6ZP65 573 aa13.42□□□□□ -0.26
MSH6-201ENST00000234420 ERICH2A1L162 156 aa13.42□□□□□ -0.26
MSH6-201ENST00000234420 NASPP49321 788 aaPredicted RBP13.42□□□□□ -0.26
MSH6-201ENST00000234420 ATP6V1DQ9Y5K8 247 aa13.42□□□□□ -0.26
MSH6-201ENST00000234420 E9PSI1 815 aa13.42□□□□□ -0.26
MSH6-201ENST00000234420 IPO4Q8TEX9 1081 aaKnown RBP13.42□□□□□ -0.26
MSH6-201ENST00000234420 FANCIQ9NVI1 1328 aa13.41□□□□□ -0.26
MSH6-201ENST00000234420 RRP9O43818 475 aaKnown RBP13.41□□□□□ -0.26
MSH6-201ENST00000234420 CAGE1Q8TC20 777 aa13.41□□□□□ -0.26
MSH6-201ENST00000234420 CCDC39Q9UFE4 941 aa13.41□□□□□ -0.26
MSH6-201ENST00000234420 ERCC4Q92889 916 aaPredicted RBP13.41□□□□□ -0.26
MSH6-201ENST00000234420 CT47B1P0C2W7 299 aaPredicted RBP13.41□□□□□ -0.26
MSH6-201ENST00000234420 ZSCAN29Q8IWY8 852 aaPredicted RBP13.41□□□□□ -0.26
MSH6-201ENST00000234420 FAM161AQ3B820 660 aa13.4□□□□□ -0.26
MSH6-201ENST00000234420 NEUROD6Q96NK8 337 aa13.4□□□□□ -0.26
MSH6-201ENST00000234420 CHMP4AQ9BY43 222 aa13.4□□□□□ -0.26
MSH6-201ENST00000234420 NEXNQ0ZGT2 675 aa13.4□□□□□ -0.26
MSH6-201ENST00000234420 SPINK5Q9NQ38 1064 aaPredicted RBP13.4□□□□□ -0.26
MSH6-201ENST00000234420 USP8P40818 1118 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms