RNA–Protein interactions for RNA: ENST00000223398.10

CLIP2-201, Transcript of CAP-Gly domain containing linker protein 2, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLIP2, Length 5,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2-201ENST00000223398 NCOA2Q15596 1464 aa22.9■■□□□ 1.26
CLIP2-201ENST00000223398 FKBP5Q13451 457 aaPredicted RBP22.9■■□□□ 1.26
CLIP2-201ENST00000223398 CUX1P39880 1505 aa22.89■■□□□ 1.26
CLIP2-201ENST00000223398 ABTB2Q8N961 1025 aa22.89■■□□□ 1.25
CLIP2-201ENST00000223398 CC2D2AQ9P2K1 1620 aa22.89■■□□□ 1.25
CLIP2-201ENST00000223398 TSPYL4Q9UJ04 414 aa22.89■■□□□ 1.25
CLIP2-201ENST00000223398 HTATSF1O43719 755 aaKnown RBP22.88■■□□□ 1.25
CLIP2-201ENST00000223398 AIMP1Q12904 312 aaKnown RBP22.88■■□□□ 1.25
CLIP2-201ENST00000223398 MARCH6O60337 910 aa22.88■■□□□ 1.25
CLIP2-201ENST00000223398 STRN4Q9NRL3 753 aa22.87■■□□□ 1.25
CLIP2-201ENST00000223398 VPS37DQ86XT2 251 aa22.86■■□□□ 1.25
CLIP2-201ENST00000223398 CREBRFQ8IUR6 639 aa22.86■■□□□ 1.25
CLIP2-201ENST00000223398 LRRC9Q6ZRR7 1453 aa22.85■■□□□ 1.25
CLIP2-201ENST00000223398 SCAPERQ9BY12 1400 aa22.85■■□□□ 1.25
CLIP2-201ENST00000223398 DDX58O95786 925 aaKnown RBP22.85■■□□□ 1.25
CLIP2-201ENST00000223398 NUTM2BA6NNL0 878 aaPredicted RBP22.84■■□□□ 1.25
CLIP2-201ENST00000223398 NUTM2EB1AL46 878 aaPredicted RBP22.84■■□□□ 1.25
CLIP2-201ENST00000223398 NUTM2AQ8IVF1 878 aaPredicted RBP22.84■■□□□ 1.25
CLIP2-201ENST00000223398 KIF21BO75037 1637 aa22.83■■□□□ 1.25
CLIP2-201ENST00000223398 CASKIN1Q8WXD9 1431 aa22.83■■□□□ 1.25
CLIP2-201ENST00000223398 IFT140Q96RY7 1462 aa22.83■■□□□ 1.25
CLIP2-201ENST00000223398 GPRASP1Q5JY77 1395 aa22.83■■□□□ 1.25
CLIP2-201ENST00000223398 PRAM1Q96QH2 718 aa22.83■■□□□ 1.25
CLIP2-201ENST00000223398 NOL10Q9BSC4 688 aaKnown RBP22.82■■□□□ 1.24
CLIP2-201ENST00000223398 KIF16BQ96L93 1317 aa22.82■■□□□ 1.24
CLIP2-201ENST00000223398 CRBNQ96SW2 442 aa22.82■■□□□ 1.24
CLIP2-201ENST00000223398 SNAPC4Q5SXM2 1469 aa22.82■■□□□ 1.24
CLIP2-201ENST00000223398 TRIM34Q9BYJ4 488 aa22.82■■□□□ 1.24
CLIP2-201ENST00000223398 EXOC6Q8TAG9 804 aa22.81■■□□□ 1.24
CLIP2-201ENST00000223398 MIA2Q96PC5 1412 aa22.81■■□□□ 1.24
CLIP2-201ENST00000223398 FYCO1Q9BQS8 1478 aa22.81■■□□□ 1.24
CLIP2-201ENST00000223398 CFTRP13569 1480 aa22.81■■□□□ 1.24
CLIP2-201ENST00000223398 APPP05067 770 aa22.8■■□□□ 1.24
CLIP2-201ENST00000223398 RUNDC1Q96C34 613 aa22.8■■□□□ 1.24
CLIP2-201ENST00000223398 THEMISQ8N1K5 641 aaPredicted RBP22.8■■□□□ 1.24
CLIP2-201ENST00000223398 FAM177BA6PVY3 158 aa22.8■■□□□ 1.24
CLIP2-201ENST00000223398 DIAPH3Q9NSV4 1193 aa22.8■■□□□ 1.24
CLIP2-201ENST00000223398 SLC26A8Q96RN1 970 aa22.79■■□□□ 1.24
CLIP2-201ENST00000223398 IFIT2P09913 472 aaKnown RBP22.79■■□□□ 1.24
CLIP2-201ENST00000223398 MSNP26038 577 aaKnown RBP22.79■■□□□ 1.24
CLIP2-201ENST00000223398 RIC3Q7Z5B4 369 aa22.79■■□□□ 1.24
CLIP2-201ENST00000223398 CHAF1AQ13111 956 aaPredicted RBP22.78■■□□□ 1.24
CLIP2-201ENST00000223398 ST18O60284 1047 aa22.78■■□□□ 1.24
CLIP2-201ENST00000223398 KIF7Q2M1P5 1343 aa22.78■■□□□ 1.24
CLIP2-201ENST00000223398 PIP4K2BP78356 416 aa22.77■■□□□ 1.24
CLIP2-201ENST00000223398 PDE4CQ08493 712 aa22.76■■□□□ 1.23
CLIP2-201ENST00000223398 KIAA2012Q0VF49 1180 aa22.76■■□□□ 1.23
CLIP2-201ENST00000223398 SF3A1Q15459 793 aaKnown RBP22.76■■□□□ 1.23
CLIP2-201ENST00000223398 G3BP1Q13283 466 aaKnown RBP eCLIP22.76■■□□□ 1.235e-6■■■■□ 22.5
CLIP2-201ENST00000223398 FOXD4L6Q3SYB3 417 aaPredicted RBP22.76■■□□□ 1.23
CLIP2-201ENST00000223398 FOXD4L3Q6VB84 417 aaPredicted RBP22.76■■□□□ 1.23
CLIP2-201ENST00000223398 RRP1P56182 461 aaKnown RBP22.75■■□□□ 1.23
CLIP2-201ENST00000223398 CCDC34Q96HJ3 373 aa22.75■■□□□ 1.23
CLIP2-201ENST00000223398 API5Q9BZZ5 524 aaKnown RBP22.75■■□□□ 1.23
CLIP2-201ENST00000223398 RBM42Q9BTD8 480 aaKnown RBP22.75■■□□□ 1.23
CLIP2-201ENST00000223398 MTHFSP49914 203 aa22.75■■□□□ 1.23
CLIP2-201ENST00000223398 AMOTL1Q8IY63 956 aa22.75■■□□□ 1.23
CLIP2-201ENST00000223398 TOPBP1Q92547 1522 aa22.75■■□□□ 1.23
CLIP2-201ENST00000223398 L1TD1Q5T7N2 865 aaKnown RBP22.74■■□□□ 1.23
CLIP2-201ENST00000223398 RBM33Q96EV2 1170 aaKnown RBP22.74■■□□□ 1.23
CLIP2-201ENST00000223398 STAC3Q96MF2 364 aa22.74■■□□□ 1.23
CLIP2-201ENST00000223398 GNAI1P63096 354 aa22.74■■□□□ 1.23
CLIP2-201ENST00000223398 DZIP1LQ8IYY4 767 aaKnown RBP22.74■■□□□ 1.23
CLIP2-201ENST00000223398 AKAP17AQ02040 695 aaKnown RBP22.74■■□□□ 1.23
CLIP2-201ENST00000223398 H3BQV1 296 aa22.73■■□□□ 1.23
CLIP2-201ENST00000223398 IFFO2Q5TF58 517 aa22.73■■□□□ 1.23
CLIP2-201ENST00000223398 SYAP1Q96A49 352 aaPredicted RBP22.73■■□□□ 1.23
CLIP2-201ENST00000223398 NBPF1Q3BBV0 1214 aa22.73■■□□□ 1.23
CLIP2-201ENST00000223398 SAMD1Q6SPF0 538 aaPredicted RBP22.73■■□□□ 1.23
CLIP2-201ENST00000223398 CTDP1Q9Y5B0 961 aaPredicted RBP22.72■■□□□ 1.23
CLIP2-201ENST00000223398 DDX19BQ9UMR2 479 aa22.72■■□□□ 1.23
CLIP2-201ENST00000223398 FAM184AQ8NB25 1140 aa22.72■■□□□ 1.23
CLIP2-201ENST00000223398 DHX16O60231 1041 aaKnown RBP22.71■■□□□ 1.23
CLIP2-201ENST00000223398 SYNE3Q6ZMZ3 975 aa22.71■■□□□ 1.23
CLIP2-201ENST00000223398 CENPQQ7L2Z9 268 aaPredicted RBP22.71■■□□□ 1.23
CLIP2-201ENST00000223398 NEUROD6Q96NK8 337 aa22.71■■□□□ 1.23
CLIP2-201ENST00000223398 SYNJ1O43426 1573 aa22.71■■□□□ 1.23
CLIP2-201ENST00000223398 RRBP1Q9P2E9 1410 aaKnown RBP22.71■■□□□ 1.23
CLIP2-201ENST00000223398 POLA1P09884 1462 aaPredicted RBP22.7■■□□□ 1.23
CLIP2-201ENST00000223398 KIF3AQ9Y496 699 aa22.7■■□□□ 1.22
CLIP2-201ENST00000223398 TPM4P67936 248 aa22.7■■□□□ 1.22
CLIP2-201ENST00000223398 XPCQ01831 940 aaPredicted RBP22.7■■□□□ 1.22
CLIP2-201ENST00000223398 CCDC7Q96M83 1385 aa22.7■■□□□ 1.22
CLIP2-201ENST00000223398 LRRFIP1Q32MZ4 808 aaKnown RBP22.69■■□□□ 1.22
CLIP2-201ENST00000223398 ANKLE2Q86XL3 938 aa22.69■■□□□ 1.22
CLIP2-201ENST00000223398 DNAJC5BQ9UF47 199 aa22.69■■□□□ 1.22
CLIP2-201ENST00000223398 ANO8Q9HCE9 1232 aaPredicted RBP22.69■■□□□ 1.22
CLIP2-201ENST00000223398 PPP1R1BQ9UD71 204 aaPredicted RBP22.69■■□□□ 1.22
CLIP2-201ENST00000223398 ARAP1Q96P48 1450 aa22.68■■□□□ 1.22
CLIP2-201ENST00000223398 CDK19Q9BWU1 502 aa22.68■■□□□ 1.22
CLIP2-201ENST00000223398 C9orf84Q5VXU9 1444 aa22.68■■□□□ 1.22
CLIP2-201ENST00000223398 MCTP1Q6DN14 999 aa22.67■■□□□ 1.22
CLIP2-201ENST00000223398 CABP1Q9NZU7 370 aa22.67■■□□□ 1.22
CLIP2-201ENST00000223398 ZBED9Q6R2W3 1325 aa22.67■■□□□ 1.22
CLIP2-201ENST00000223398 DDX54Q8TDD1 881 aaKnown RBP22.67■■□□□ 1.22
CLIP2-201ENST00000223398 PTMSP20962 102 aa22.67■■□□□ 1.22
CLIP2-201ENST00000223398 ZNF428Q96B54 188 aa22.67■■□□□ 1.22
CLIP2-201ENST00000223398 FYB1O15117 783 aa22.66■■□□□ 1.22
CLIP2-201ENST00000223398 SLC12A5Q9H2X9 1139 aa22.66■■□□□ 1.22
CLIP2-201ENST00000223398 TOM1L2Q6ZVM7 507 aa22.66■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms