RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, human

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCN1A-222	ENST00000642141	DDX12P	Q92771	950 aa		11.2	□□□□□ -0.62
SCN1A-222	ENST00000642141	FGF14	Q92915	247 aa		11.2	□□□□□ -0.62
SCN1A-222	ENST00000642141	MCRS1	Q96EZ8	462 aa		11.2	□□□□□ -0.62
SCN1A-222	ENST00000642141	SUSD3	Q96L08	255 aa		11.2	□□□□□ -0.62
SCN1A-222	ENST00000642141	KXD1	Q9BQD3	176 aa		11.2	□□□□□ -0.62
SCN1A-222	ENST00000642141	CORO1B	Q9BR76	489 aa		11.2	□□□□□ -0.62
SCN1A-222	ENST00000642141	RHOBTB2	Q9BYZ6	727 aa		11.2	□□□□□ -0.62
SCN1A-222	ENST00000642141	CCDC39	Q9UFE4	941 aa		11.2	□□□□□ -0.62
SCN1A-222	ENST00000642141	CDH7	Q9ULB5	785 aa		11.2	□□□□□ -0.62
SCN1A-222	ENST00000642141	SRPRB	Q9Y5M8	271 aa	Known RBP	11.2	□□□□□ -0.62
SCN1A-222	ENST00000642141	ZDBF2	Q9HCK1	2354 aa		11.2	□□□□□ -0.62
SCN1A-222	ENST00000642141		A0A087X0B3	334 aa		11.19	□□□□□ -0.62
SCN1A-222	ENST00000642141	SYN3	O14994	580 aa		11.19	□□□□□ -0.62
SCN1A-222	ENST00000642141	STX6	O43752	255 aa		11.19	□□□□□ -0.62
SCN1A-222	ENST00000642141	FAM189A1	O60320	539 aa		11.19	□□□□□ -0.62
SCN1A-222	ENST00000642141	TBC1D4	O60343	1298 aa		11.19	□□□□□ -0.62
SCN1A-222	ENST00000642141	ABLIM3	O94929	683 aa		11.19	□□□□□ -0.62
SCN1A-222	ENST00000642141	PAPLN	O95428	1278 aa		11.19	□□□□□ -0.62
SCN1A-222	ENST00000642141	NFIC	P08651	508 aa		11.19	□□□□□ -0.62
SCN1A-222	ENST00000642141	OR4Q2	P0C623	313 aa		11.19	□□□□□ -0.62
SCN1A-222	ENST00000642141	GTF2B	Q00403	316 aa		11.19	□□□□□ -0.62
SCN1A-222	ENST00000642141	ADCY1	Q08828	1119 aa		11.19	□□□□□ -0.62
SCN1A-222	ENST00000642141	KCNA1	Q09470	495 aa		11.19	□□□□□ -0.62
SCN1A-222	ENST00000642141	MRPL58	Q14197	206 aa	Known RBP	11.19	□□□□□ -0.62
SCN1A-222	ENST00000642141	ZBTB6	Q15916	424 aa		11.19	□□□□□ -0.62
SCN1A-222	ENST00000642141	SLC5A9	Q2M3M2	681 aa		11.19	□□□□□ -0.62
SCN1A-222	ENST00000642141	UVSSA	Q2YD98	709 aa		11.19	□□□□□ -0.62
SCN1A-222	ENST00000642141	CWF19L1	Q69YN2	538 aa	Known RBP	11.19	□□□□□ -0.62
SCN1A-222	ENST00000642141	ADAL	Q6DHV7	355 aa		11.19	□□□□□ -0.62
SCN1A-222	ENST00000642141	DSTYK	Q6XUX3	929 aa		11.19	□□□□□ -0.62
SCN1A-222	ENST00000642141	RNF19B	Q6ZMZ0	732 aa		11.19	□□□□□ -0.62
SCN1A-222	ENST00000642141	SV2B	Q7L1I2	683 aa		11.19	□□□□□ -0.62
SCN1A-222	ENST00000642141	HS6ST3	Q8IZP7	471 aa		11.19	□□□□□ -0.62
SCN1A-222	ENST00000642141	TCEAL4	Q96EI5	215 aa		11.19	□□□□□ -0.62
SCN1A-222	ENST00000642141	PGLYRP2	Q96PD5	576 aa		11.19	□□□□□ -0.62
SCN1A-222	ENST00000642141	FIZ1	Q96SL8	496 aa		11.19	□□□□□ -0.62
SCN1A-222	ENST00000642141	MRPL44	Q9H9J2	332 aa	Known RBP	11.19	□□□□□ -0.62
SCN1A-222	ENST00000642141	PLEKHA5	Q9HAU0	1116 aa		11.19	□□□□□ -0.62
SCN1A-222	ENST00000642141	PCDHB8	Q9UN66	801 aa		11.19	□□□□□ -0.62
SCN1A-222	ENST00000642141	MRPS23	Q9Y3D9	190 aa	Known RBP	11.19	□□□□□ -0.62
SCN1A-222	ENST00000642141	DOCK6	Q96HP0	2047 aa		11.19	□□□□□ -0.62
SCN1A-222	ENST00000642141	MYH11	P35749	1972 aa		11.18	□□□□□ -0.62
SCN1A-222	ENST00000642141	MTCL1	Q9Y4B5	1905 aa	Known RBP	11.18	□□□□□ -0.62
SCN1A-222	ENST00000642141	ANHX	E9PGG2	379 aa		11.18	□□□□□ -0.62
SCN1A-222	ENST00000642141	NRG2	O14511	850 aa	Predicted RBP	11.18	□□□□□ -0.62
SCN1A-222	ENST00000642141	GALR2	O43603	387 aa	Predicted RBP	11.18	□□□□□ -0.62
SCN1A-222	ENST00000642141	PIGR	P01833	764 aa		11.18	□□□□□ -0.62
SCN1A-222	ENST00000642141	LRG1	P02750	347 aa		11.18	□□□□□ -0.62
SCN1A-222	ENST00000642141	RHO	P08100	348 aa		11.18	□□□□□ -0.62
SCN1A-222	ENST00000642141	SRF	P11831	508 aa		11.18	□□□□□ -0.62
SCN1A-222	ENST00000642141	IDE	P14735	1019 aa		11.18	□□□□□ -0.62
SCN1A-222	ENST00000642141	CPB1	P15086	417 aa		11.18	□□□□□ -0.62
SCN1A-222	ENST00000642141	CEBPB	P17676	345 aa		11.18	□□□□□ -0.62
SCN1A-222	ENST00000642141	HOXA9	P31269	272 aa		11.18	□□□□□ -0.62
SCN1A-222	ENST00000642141	TXLNA	P40222	546 aa		11.18	□□□□□ -0.62
SCN1A-222	ENST00000642141	STAT6	P42226	847 aa		11.18	□□□□□ -0.62
SCN1A-222	ENST00000642141	CLCN5	P51795	746 aa		11.18	□□□□□ -0.62
SCN1A-222	ENST00000642141	GPC5	P78333	572 aa		11.18	□□□□□ -0.62
SCN1A-222	ENST00000642141	SLC39A14	Q15043	492 aa		11.18	□□□□□ -0.62
SCN1A-222	ENST00000642141	STK38	Q15208	465 aa		11.18	□□□□□ -0.62
SCN1A-222	ENST00000642141	SLC8B1	Q6J4K2	584 aa		11.18	□□□□□ -0.62
SCN1A-222	ENST00000642141	POTEH	Q6S545	545 aa		11.18	□□□□□ -0.62
SCN1A-222	ENST00000642141	ZNF720	Q7Z2F6	126 aa		11.18	□□□□□ -0.62
SCN1A-222	ENST00000642141	USP37	Q86T82	979 aa		11.18	□□□□□ -0.62
SCN1A-222	ENST00000642141	GPIHBP1	Q8IV16	184 aa		11.18	□□□□□ -0.62
SCN1A-222	ENST00000642141	ZSWIM2	Q8NEG5	633 aa		11.18	□□□□□ -0.62
SCN1A-222	ENST00000642141	APPL2	Q8NEU8	664 aa		11.18	□□□□□ -0.62
SCN1A-222	ENST00000642141	NOC3L	Q8WTT2	800 aa	Known RBP	11.18	□□□□□ -0.62
SCN1A-222	ENST00000642141	INTS4	Q96HW7	963 aa	Known RBP	11.18	□□□□□ -0.62
SCN1A-222	ENST00000642141	PRRX2	Q99811	253 aa		11.18	□□□□□ -0.62
SCN1A-222	ENST00000642141	CPSF3	Q9UKF6	684 aa	Known RBP	11.18	□□□□□ -0.62
SCN1A-222	ENST00000642141	AGO2	Q9UKV8	859 aa	Known RBP	11.18	□□□□□ -0.62
SCN1A-222	ENST00000642141	UBQLN1	Q9UMX0	589 aa	Known RBP	11.18	□□□□□ -0.62
SCN1A-222	ENST00000642141	SLC27A5	Q9Y2P5	690 aa		11.18	□□□□□ -0.62
SCN1A-222	ENST00000642141	KMT2E	Q8IZD2	1858 aa		11.18	□□□□□ -0.62
SCN1A-222	ENST00000642141	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	11.17	□□□□□ -0.62
SCN1A-222	ENST00000642141	SPTLC1	O15269	473 aa		11.17	□□□□□ -0.62
SCN1A-222	ENST00000642141	SOAT2	O75908	522 aa		11.17	□□□□□ -0.62
SCN1A-222	ENST00000642141	GCNT3	O95395	438 aa		11.17	□□□□□ -0.62
SCN1A-222	ENST00000642141	DCN	P07585	359 aa	Known RBP	11.17	□□□□□ -0.62
SCN1A-222	ENST00000642141	MYL4	P12829	197 aa		11.17	□□□□□ -0.62
SCN1A-222	ENST00000642141	ATF2	P15336	505 aa		11.17	□□□□□ -0.62
SCN1A-222	ENST00000642141	GJA1	P17302	382 aa		11.17	□□□□□ -0.62
SCN1A-222	ENST00000642141	PTPN2	P17706	415 aa		11.17	□□□□□ -0.62
SCN1A-222	ENST00000642141	LRPAP1	P30533	357 aa		11.17	□□□□□ -0.62
SCN1A-222	ENST00000642141	CASP5	P51878	434 aa		11.17	□□□□□ -0.62
SCN1A-222	ENST00000642141	YWHAH	Q04917	246 aa	Predicted RBP	11.17	□□□□□ -0.62
SCN1A-222	ENST00000642141	TWF1	Q12792	350 aa		11.17	□□□□□ -0.62
SCN1A-222	ENST00000642141	SNW1	Q13573	536 aa	Known RBP	11.17	□□□□□ -0.62
SCN1A-222	ENST00000642141	TMEM132D	Q14C87	1099 aa		11.17	□□□□□ -0.62
SCN1A-222	ENST00000642141	KYAT1	Q16773	422 aa		11.17	□□□□□ -0.62
SCN1A-222	ENST00000642141	SPATA1	Q5VX52	437 aa		11.17	□□□□□ -0.62
SCN1A-222	ENST00000642141	ZNF280D	Q6N043	979 aa		11.17	□□□□□ -0.62
SCN1A-222	ENST00000642141	MAP4K3	Q8IVH8	894 aa		11.17	□□□□□ -0.62
SCN1A-222	ENST00000642141	NPAS3	Q8IXF0	933 aa		11.17	□□□□□ -0.62
SCN1A-222	ENST00000642141	TCEAL8	Q8IYN2	117 aa		11.17	□□□□□ -0.62
SCN1A-222	ENST00000642141	BEST2	Q8NFU1	509 aa		11.17	□□□□□ -0.62
SCN1A-222	ENST00000642141	POMGNT1	Q8WZA1	660 aa		11.17	□□□□□ -0.62
SCN1A-222	ENST00000642141	HPS3	Q969F9	1004 aa		11.17	□□□□□ -0.62
SCN1A-222	ENST00000642141	NXPE3	Q969Y0	559 aa		11.17	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 385.6 ms