RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 LRRC8EQ6NSJ5 796 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 PHF20Q9BVI0 1012 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 KIAA1586Q9HCI6 787 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 SUCOQ9UBS9 1254 aaKnown RBP2.92□□□□□ -1.94
SCN1A-219ENST00000641575 SERPINB13Q9UIV8 391 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 ZBTB21Q9ULJ3 1066 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 SONP18583 2426 aaKnown RBP2.92□□□□□ -1.94
SCN1A-219ENST00000641575 FAM135BQ49AJ0 1406 aa2.92□□□□□ -1.94
SCN1A-219ENST00000641575 PASKQ96RG2 1323 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 NSD2O96028 1365 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 A0A087X0T9 212 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 LRRIQ4A6NIV6 560 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 C16orf96A6NNT2 1141 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 ZNF500O60304 480 aaPredicted RBP2.91□□□□□ -1.94
SCN1A-219ENST00000641575 GPC4O75487 556 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 DCTN3O75935 186 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 CYB5AP00167 134 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 RPN1P04843 607 aaKnown RBP2.91□□□□□ -1.94
SCN1A-219ENST00000641575 NCAM1P13591 858 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 ATF2P15336 505 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 KELP23276 732 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 RPS6KA3P51812 740 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 SNAP25P60880 206 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 OCRLQ01968 901 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 CAMK1Q14012 370 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 USP41Q3LFD5 358 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 USP39Q53GS9 565 aaKnown RBP2.91□□□□□ -1.94
SCN1A-219ENST00000641575 GALNT17Q6IS24 598 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 PACS1Q6VY07 963 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 ZC3HC1Q86WB0 502 aaKnown RBP2.91□□□□□ -1.94
SCN1A-219ENST00000641575 SNX32Q86XE0 403 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 GAS2L3Q86XJ1 694 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 MMGT1Q8N4V1 131 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 ARL10Q8N8L6 244 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 AGBL1Q96MI9 1066 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 SLC39A10Q9ULF5 831 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 TRPM2O94759 1503 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 SPTBN4Q9H254 2564 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 ATG13O75143 517 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 DDHD2O94830 711 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 CBX5P45973 191 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 CCR3P51677 355 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 TBL3Q12788 808 aaKnown RBP2.91□□□□□ -1.94
SCN1A-219ENST00000641575 KNOP1Q1ED39 458 aaKnown RBP2.91□□□□□ -1.94
SCN1A-219ENST00000641575 DGKKQ5KSL6 1271 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 HECTD3Q5T447 861 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 TEDDM1Q5T9Z0 273 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 STX12Q86Y82 276 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 TAGAPQ8N103 731 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 RNASE11Q8TAA1 199 aaKnown RBP2.91□□□□□ -1.94
SCN1A-219ENST00000641575 NELFBQ8WX92 580 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 SLITRK1Q96PX8 696 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 ADI1Q9BV57 179 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 TMEM206Q9H813 350 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 MANSC1Q9H8J5 431 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 NPHS2Q9NP85 383 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 POLR3EQ9NVU0 708 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 HDAC6Q9UBN7 1215 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 SAR1BQ9Y6B6 198 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 EML6Q6ZMW3 1958 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 TMX2-CTNND1H3BSU7 103 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 SMAPO00193 183 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 PSMD3O43242 534 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 CXCR2P25025 360 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 EIF2S3P41091 472 aaKnown RBP2.91□□□□□ -1.94
SCN1A-219ENST00000641575 PTK2Q05397 1052 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 IFRD2Q12894 506 aaPredicted RBP2.91□□□□□ -1.94
SCN1A-219ENST00000641575 NOGQ13253 232 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 MXD4Q14582 209 aaPredicted RBP2.91□□□□□ -1.94
SCN1A-219ENST00000641575 IMPG1Q17R60 797 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 BSPRYQ5W0U4 402 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 CLEC4GQ6UXB4 293 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 TRMT11Q7Z4G4 463 aaKnown RBP2.91□□□□□ -1.94
SCN1A-219ENST00000641575 ARHGAP22Q7Z5H3 698 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 UNC45BQ8IWX7 931 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 TEX29Q8N6K0 151 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 MDM1Q8TC05 714 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 CLMNQ96JQ2 1002 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 C17orf62Q9BQA9 187 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 ETAA1Q9NY74 926 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 CYP39A1Q9NYL5 469 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 MGAT4AQ9UM21 535 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 USP16Q9Y5T5 823 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 WIZO95785 1651 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 CAPN14A8MX76 684 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 SLC9A3R1O14745 358 aaPredicted RBP2.91□□□□□ -1.94
SCN1A-219ENST00000641575 MAPK13O15264 365 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 AMHP03971 560 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 S100A1P23297 94 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 KLC1Q07866 573 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 STX4Q12846 297 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 CAPN12Q6ZSI9 719 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 DGKHQ86XP1 1220 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 STAG2Q8N3U4 1231 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 TRPV3Q8NET8 790 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 ARHGEF26Q96DR7 871 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 FAM167BQ9BTA0 163 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 TMEM60Q9H2L4 133 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 ELL3Q9HB65 397 aaPredicted RBP2.91□□□□□ -1.94
SCN1A-219ENST00000641575 KIAA0391O15091 583 aaKnown RBP2.91□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms