RNA–Protein interactions for RNA: ENST00000640091.1

NECAP1-223, Transcript of NECAP endocytosis associated 1, human

TSL 2

Gene NECAP1, Length 2,115 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NECAP1-223	ENST00000640091	IFIH1	Q9BYX4	1025 aa	Known RBP	11.24	□□□□□ -0.61
NECAP1-223	ENST00000640091	ERVK-5	Q9HDB9	667 aa		11.24	□□□□□ -0.61
NECAP1-223	ENST00000640091	FAM105A	Q9NUU6	356 aa		11.24	□□□□□ -0.61
NECAP1-223	ENST00000640091	SEPT11	Q9NVA2	429 aa	Known RBP	11.24	□□□□□ -0.61
NECAP1-223	ENST00000640091	GUCA1B	Q9UMX6	200 aa		11.24	□□□□□ -0.61
NECAP1-223	ENST00000640091	AGAP1	Q9UPQ3	857 aa		11.24	□□□□□ -0.61
NECAP1-223	ENST00000640091	C2CD2	Q9Y426	696 aa		11.24	□□□□□ -0.61
NECAP1-223	ENST00000640091	DAAM1	Q9Y4D1	1078 aa		11.24	□□□□□ -0.61
NECAP1-223	ENST00000640091	SMIM28	A0A1B0GU29	152 aa		11.23	□□□□□ -0.61
NECAP1-223	ENST00000640091	TMCO5B	A8MYB1	307 aa		11.23	□□□□□ -0.61
NECAP1-223	ENST00000640091	DDX3X	O00571	662 aa	Known RBP eCLIP	11.23	□□□□□ -0.61
NECAP1-223	ENST00000640091	CCDC172	P0C7W6	258 aa		11.23	□□□□□ -0.61
NECAP1-223	ENST00000640091	CD58	P19256	250 aa		11.23	□□□□□ -0.61
NECAP1-223	ENST00000640091	MNX1	P50219	401 aa	Predicted RBP	11.23	□□□□□ -0.61
NECAP1-223	ENST00000640091	AFF1	P51825	1210 aa	Known RBP	11.23	□□□□□ -0.61
NECAP1-223	ENST00000640091	CCDC122	Q5T0U0	273 aa		11.23	□□□□□ -0.61
NECAP1-223	ENST00000640091	FBXO46	Q6PJ61	603 aa	Predicted RBP	11.23	□□□□□ -0.61
NECAP1-223	ENST00000640091	TMEM270	Q6UE05	265 aa		11.23	□□□□□ -0.61
NECAP1-223	ENST00000640091	SYT10	Q6XYQ8	523 aa		11.23	□□□□□ -0.61
NECAP1-223	ENST00000640091	SCARA5	Q6ZMJ2	495 aa		11.23	□□□□□ -0.61
NECAP1-223	ENST00000640091	PALB2	Q86YC2	1186 aa		11.23	□□□□□ -0.61
NECAP1-223	ENST00000640091	CD302	Q8IX05	232 aa		11.23	□□□□□ -0.61
NECAP1-223	ENST00000640091	RNF169	Q8NCN4	708 aa		11.23	□□□□□ -0.61
NECAP1-223	ENST00000640091	LNX1	Q8TBB1	728 aa	Predicted RBP	11.23	□□□□□ -0.61
NECAP1-223	ENST00000640091	ADAM2	Q99965	735 aa		11.23	□□□□□ -0.61
NECAP1-223	ENST00000640091	PACSIN1	Q9BY11	444 aa		11.23	□□□□□ -0.61
NECAP1-223	ENST00000640091	CHST12	Q9NRB3	414 aa		11.23	□□□□□ -0.61
NECAP1-223	ENST00000640091	TUBGCP4	Q9UGJ1	667 aa		11.23	□□□□□ -0.61
NECAP1-223	ENST00000640091	POLI	Q9UNA4	740 aa		11.23	□□□□□ -0.61
NECAP1-223	ENST00000640091	ACO1	P21399	889 aa	Known RBP	11.23	□□□□□ -0.61
NECAP1-223	ENST00000640091	CDH8	P55286	799 aa		11.23	□□□□□ -0.61
NECAP1-223	ENST00000640091	ZBTB6	Q15916	424 aa		11.23	□□□□□ -0.61
NECAP1-223	ENST00000640091	ZNF394	Q53GI3	561 aa		11.23	□□□□□ -0.61
NECAP1-223	ENST00000640091	ALKBH5	Q6P6C2	394 aa	Known RBP	11.23	□□□□□ -0.61
NECAP1-223	ENST00000640091	ENOSF1	Q7L5Y1	443 aa		11.23	□□□□□ -0.61
NECAP1-223	ENST00000640091	NOP9	Q86U38	636 aa	Known RBP	11.23	□□□□□ -0.61
NECAP1-223	ENST00000640091	OLIG1	Q8TAK6	271 aa		11.23	□□□□□ -0.61
NECAP1-223	ENST00000640091	DIS3L	Q8TF46	1054 aa	Known RBP	11.23	□□□□□ -0.61
NECAP1-223	ENST00000640091	AGPAT1	Q99943	283 aa		11.23	□□□□□ -0.61
NECAP1-223	ENST00000640091	ZMYND15	Q9H091	742 aa		11.23	□□□□□ -0.61
NECAP1-223	ENST00000640091	GOLGA2P5	Q9HBQ8	144 aa		11.23	□□□□□ -0.61
NECAP1-223	ENST00000640091	CNTN3	Q9P232	1028 aa		11.23	□□□□□ -0.61
NECAP1-223	ENST00000640091	NAGPA	Q9UK23	515 aa		11.23	□□□□□ -0.61
NECAP1-223	ENST00000640091	R3HCC1	Q9Y3T6	440 aa	Known RBP	11.23	□□□□□ -0.61
NECAP1-223	ENST00000640091	PAXBP1	Q9Y5B6	917 aa		11.23	□□□□□ -0.61
NECAP1-223	ENST00000640091	PCDHB4	Q9Y5E5	795 aa		11.23	□□□□□ -0.61
NECAP1-223	ENST00000640091	GOLGA6L9	A6NEM1	432 aa		11.22	□□□□□ -0.61
NECAP1-223	ENST00000640091	PPEF2	O14830	753 aa		11.22	□□□□□ -0.61
NECAP1-223	ENST00000640091	CYP11B1	P15538	503 aa		11.22	□□□□□ -0.61
NECAP1-223	ENST00000640091	TNFAIP3	P21580	790 aa		11.22	□□□□□ -0.61
NECAP1-223	ENST00000640091	RAP1GAP	P47736	663 aa		11.22	□□□□□ -0.61
NECAP1-223	ENST00000640091	VAV2	P52735	878 aa		11.22	□□□□□ -0.61
NECAP1-223	ENST00000640091	GNG11	P61952	73 aa		11.22	□□□□□ -0.61
NECAP1-223	ENST00000640091	RPUSD2	Q8IZ73	545 aa	Known RBP	11.22	□□□□□ -0.61
NECAP1-223	ENST00000640091	SLC30A5	Q8TAD4	765 aa		11.22	□□□□□ -0.61
NECAP1-223	ENST00000640091	EPS8L1	Q8TE68	723 aa		11.22	□□□□□ -0.61
NECAP1-223	ENST00000640091	JAKMIP2	Q96AA8	810 aa		11.22	□□□□□ -0.61
NECAP1-223	ENST00000640091	HPDL	Q96IR7	371 aa		11.22	□□□□□ -0.61
NECAP1-223	ENST00000640091	GAD1	Q99259	594 aa		11.22	□□□□□ -0.61
NECAP1-223	ENST00000640091	SYT11	Q9BT88	431 aa		11.22	□□□□□ -0.61
NECAP1-223	ENST00000640091	DNAI1	Q9UI46	699 aa		11.22	□□□□□ -0.61
NECAP1-223	ENST00000640091	MACROD2	A1Z1Q3	448 aa		11.21	□□□□□ -0.61
NECAP1-223	ENST00000640091	FANCG	O15287	622 aa		11.21	□□□□□ -0.61
NECAP1-223	ENST00000640091	CD4	P01730	458 aa		11.21	□□□□□ -0.61
NECAP1-223	ENST00000640091	MME	P08473	750 aa		11.21	□□□□□ -0.61
NECAP1-223	ENST00000640091	HSPA1A	P0DMV8	641 aa	Known RBP	11.21	□□□□□ -0.61
NECAP1-223	ENST00000640091	HSPA1B	P0DMV9	641 aa	Known RBP	11.21	□□□□□ -0.61
NECAP1-223	ENST00000640091	ITGA4	P13612	1032 aa		11.21	□□□□□ -0.61
NECAP1-223	ENST00000640091	CHRNB2	P17787	502 aa		11.21	□□□□□ -0.61
NECAP1-223	ENST00000640091	TBXAS1	P24557	533 aa	Predicted RBP	11.21	□□□□□ -0.61
NECAP1-223	ENST00000640091	SSTR3	P32745	418 aa	Predicted RBP	11.21	□□□□□ -0.61
NECAP1-223	ENST00000640091	MLH1	P40692	756 aa		11.21	□□□□□ -0.61
NECAP1-223	ENST00000640091	ASPA	P45381	313 aa		11.21	□□□□□ -0.61
NECAP1-223	ENST00000640091	ETF1	P62495	437 aa	Known RBP	11.21	□□□□□ -0.61
NECAP1-223	ENST00000640091	RBP5	P82980	135 aa		11.21	□□□□□ -0.61
NECAP1-223	ENST00000640091	SOX4	Q06945	474 aa	Predicted RBP	11.21	□□□□□ -0.61
NECAP1-223	ENST00000640091	KIF5A	Q12840	1032 aa		11.21	□□□□□ -0.61
NECAP1-223	ENST00000640091	BMS1	Q14692	1282 aa	Known RBP	11.21	□□□□□ -0.61
NECAP1-223	ENST00000640091	ZNF667	Q5HYK9	610 aa		11.21	□□□□□ -0.61
NECAP1-223	ENST00000640091	SLC39A5	Q6ZMH5	540 aa		11.21	□□□□□ -0.61
NECAP1-223	ENST00000640091	RTN4RL1	Q86UN2	441 aa	Predicted RBP	11.21	□□□□□ -0.61
NECAP1-223	ENST00000640091	VPS36	Q86VN1	386 aa		11.21	□□□□□ -0.61
NECAP1-223	ENST00000640091	NT5DC4	Q86YG4	428 aa		11.21	□□□□□ -0.61
NECAP1-223	ENST00000640091	FAM81B	Q96LP2	452 aa		11.21	□□□□□ -0.61
NECAP1-223	ENST00000640091	WDR24	Q96S15	920 aa		11.21	□□□□□ -0.61
NECAP1-223	ENST00000640091	NIF3L1	Q9GZT8	377 aa		11.21	□□□□□ -0.61
NECAP1-223	ENST00000640091	CRISPLD2	Q9H0B8	497 aa		11.21	□□□□□ -0.61
NECAP1-223	ENST00000640091	MIOS	Q9NXC5	875 aa		11.21	□□□□□ -0.61
NECAP1-223	ENST00000640091	TAS2R14	Q9NYV8	317 aa		11.21	□□□□□ -0.61
NECAP1-223	ENST00000640091	NOCT	Q9UK39	431 aa	Known RBP	11.21	□□□□□ -0.61
NECAP1-223	ENST00000640091	ITGA11	Q9UKX5	1188 aa		11.21	□□□□□ -0.61
NECAP1-223	ENST00000640091	ANK1	P16157	1881 aa		11.21	□□□□□ -0.61
NECAP1-223	ENST00000640091	FRMPD3	Q5JV73	1810 aa		11.21	□□□□□ -0.62
NECAP1-223	ENST00000640091	DSC3	Q14574	896 aa		11.21	□□□□□ -0.62
NECAP1-223	ENST00000640091	NAB2	Q15742	525 aa		11.21	□□□□□ -0.62
NECAP1-223	ENST00000640091	XKR4	Q5GH76	650 aa		11.21	□□□□□ -0.62
NECAP1-223	ENST00000640091	AGMO	Q6ZNB7	445 aa		11.21	□□□□□ -0.62
NECAP1-223	ENST00000640091	LRRC8D	Q7L1W4	858 aa		11.21	□□□□□ -0.62
NECAP1-223	ENST00000640091	FMNL3	Q8IVF7	1028 aa		11.21	□□□□□ -0.62
NECAP1-223	ENST00000640091	USP38	Q8NB14	1042 aa		11.21	□□□□□ -0.62

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