RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 PIGOQ8TEQ8 1089 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 KAT2BQ92831 832 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 SLC5A5Q92911 643 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 KLHL29Q96CT2 875 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 TUBB6Q9BUF5 446 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 NUP85Q9BW27 656 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 TRAIPQ9BWF2 469 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 PRO3102Q9H379 93 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 GOLPH3Q9H4A6 298 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 CCDC134Q9H6E4 229 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 MRPL47Q9HD33 250 aaKnown RBP4.24□□□□□ -1.73
SCN1A-214ENST00000637038 SIX2Q9NPC8 291 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 PICK1Q9NRD5 415 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 RWDD3Q9Y3V2 267 aa4.24□□□□□ -1.73
SCN1A-214ENST00000637038 FNDC1Q4ZHG4 1894 aaPredicted RBP4.23□□□□□ -1.73
SCN1A-214ENST00000637038 TANC1Q9C0D5 1861 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 MEIS2O14770 477 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 KIAA0391O15091 583 aaKnown RBP4.23□□□□□ -1.73
SCN1A-214ENST00000637038 HNRNPCL1O60812 293 aaKnown RBP4.23□□□□□ -1.73
SCN1A-214ENST00000637038 HIP1RO75146 1068 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 CAND2O75155 1236 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 RASSF9O75901 435 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 CLTAP09496 248 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 ATP2A2P16615 1042 aaKnown RBP4.23□□□□□ -1.73
SCN1A-214ENST00000637038 IRS1P35568 1242 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 NSFP46459 744 aaKnown RBP4.23□□□□□ -1.73
SCN1A-214ENST00000637038 JAK3P52333 1124 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 KCNQ4P56696 695 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 SPIRE1Q08AE8 756 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 TCP10Q12799 353 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 DMP1Q13316 513 aaPredicted RBP4.23□□□□□ -1.73
SCN1A-214ENST00000637038 ZNF211Q13398 564 aaPredicted RBP4.23□□□□□ -1.73
SCN1A-214ENST00000637038 NAA25Q14CX7 972 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 C11orf91Q3C1V1 193 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 CCDC38Q502W7 563 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 KRT39Q6A163 491 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 C1orf186Q6ZWK4 172 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 FUKQ8N0W3 1084 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 SAMD3Q8N6K7 520 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 KCNV2Q8TDN2 545 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 N4BP2L2Q92802 583 aaPredicted RBP4.23□□□□□ -1.73
SCN1A-214ENST00000637038 ARHGEF2Q92974 986 aaKnown RBP4.23□□□□□ -1.73
SCN1A-214ENST00000637038 TIFAQ96CG3 184 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 BICD1Q96G01 975 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 MPHOSPH6Q99547 160 aaKnown RBP4.23□□□□□ -1.73
SCN1A-214ENST00000637038 LXNQ9BS40 222 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 IMPG2Q9BZV3 1241 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 THAP2Q9H0W7 228 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 SLC28A3Q9HAS3 691 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 KIAA1586Q9HCI6 787 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 TBC1D22BQ9NU19 505 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 RGL1Q9NZL6 768 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 POLLQ9UGP5 575 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 VAV3Q9UKW4 847 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 PPP1R9AQ9ULJ8 1098 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 NUB1Q9Y5A7 615 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 SCINQ9Y6U3 715 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 IVNS1ABPQ9Y6Y0 642 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 CASP8AP2Q9UKL3 1982 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 KLHL33A6NCF5 533 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 PMM2O15305 246 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 TP73O15350 636 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 MAP3K13O43283 966 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 ZC3H11AO75152 810 aaKnown RBP eCLIP4.23□□□□□ -1.73
SCN1A-214ENST00000637038 CDH16O75309 829 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 DCTN3O75935 186 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 PLS3P13797 630 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 COMTP21964 271 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 CCND1P24385 295 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 PHBP35232 272 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 IFNAR2P48551 515 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 CASP5P51878 434 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 PSMC6P62333 389 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 RIPK1Q13546 671 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 SLC29A2Q14542 456 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 RASA3Q14644 834 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 STRIP1Q5VSL9 837 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 WDR78Q5VTH9 848 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 NIPA1Q7RTP0 329 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 SPATA21Q7Z572 469 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 BMP8AQ7Z5Y6 402 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 VSIG1Q86XK7 387 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 CLEC10AQ8IUN9 316 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 LMNTD2Q8IXW0 634 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 ANKRD42Q8N9B4 389 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 RDH13Q8NBN7 331 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 FBXO25Q8TCJ0 367 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 TCP11Q8WWU5 503 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 FNBP1Q96RU3 617 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 IDI2Q9BXS1 227 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 UBN1Q9NPG3 1134 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 DBR1Q9UK59 544 aaKnown RBP4.23□□□□□ -1.73
SCN1A-214ENST00000637038 FEM1BQ9UK73 627 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 EPB41L3Q9Y2J2 1087 aaPredicted RBP4.23□□□□□ -1.73
SCN1A-214ENST00000637038 RSPH10B2B2RC85 870 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 IPO5O00410 1097 aaKnown RBP4.23□□□□□ -1.73
SCN1A-214ENST00000637038 TGFB1I1O43294 461 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 RIPK2O43353 540 aa4.23□□□□□ -1.73
SCN1A-214ENST00000637038 VIL1P09327 827 aaKnown RBP4.23□□□□□ -1.73
SCN1A-214ENST00000637038 RSPH10BP0C881 870 aa4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms