RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 AGMOQ6ZNB7 445 aa15.22■□□□□ 0.03
CLN3-242ENST00000635958 ECHDC2Q86YB7 292 aa15.22■□□□□ 0.03
CLN3-242ENST00000635958 C1orf127Q8N9H9 656 aa15.22■□□□□ 0.03
CLN3-242ENST00000635958 PGBD4Q96DM1 585 aa15.22■□□□□ 0.03
CLN3-242ENST00000635958 SCLYQ96I15 445 aa15.22■□□□□ 0.03
CLN3-242ENST00000635958 APOL6Q9BWW8 343 aa15.22■□□□□ 0.03
CLN3-242ENST00000635958 PPP1R12CQ9BZL4 782 aa15.22■□□□□ 0.03
CLN3-242ENST00000635958 UBN1Q9NPG3 1134 aa15.22■□□□□ 0.03
CLN3-242ENST00000635958 TULP1O00294 542 aaPredicted RBP15.21■□□□□ 0.03
CLN3-242ENST00000635958 ENPP3O14638 875 aa15.21■□□□□ 0.03
CLN3-242ENST00000635958 URI1O94763 535 aaPredicted RBP15.21■□□□□ 0.03
CLN3-242ENST00000635958 TUBBP07437 444 aa15.21■□□□□ 0.03
CLN3-242ENST00000635958 HNRNPH3P31942 346 aaKnown RBP15.21■□□□□ 0.03
CLN3-242ENST00000635958 SMYD5Q6GMV2 418 aa15.21■□□□□ 0.03
CLN3-242ENST00000635958 GSTCDQ8NEC7 633 aa15.21■□□□□ 0.03
CLN3-242ENST00000635958 SYN2Q92777 582 aaPredicted RBP15.21■□□□□ 0.03
CLN3-242ENST00000635958 KIF12Q96FN5 646 aa15.21■□□□□ 0.03
CLN3-242ENST00000635958 NUCKS1Q9H1E3 243 aaKnown RBP15.21■□□□□ 0.03
CLN3-242ENST00000635958 ABHD10Q9NUJ1 306 aa15.21■□□□□ 0.03
CLN3-242ENST00000635958 SIX4Q9UIU6 781 aa15.21■□□□□ 0.03
CLN3-242ENST00000635958 MKI67P46013 3256 aaKnown RBP15.2■□□□□ 0.02
CLN3-242ENST00000635958 TRIM43BA6NCK2 446 aa15.2■□□□□ 0.02
CLN3-242ENST00000635958 INPPL1O15357 1258 aa15.2■□□□□ 0.02
CLN3-242ENST00000635958 PHACTR2O75167 634 aa15.2■□□□□ 0.02
CLN3-242ENST00000635958 ZRANB2O95218 330 aaKnown RBP eCLIP15.2■□□□□ 0.02
CLN3-242ENST00000635958 ASS1P00966 412 aaKnown RBP15.2■□□□□ 0.02
CLN3-242ENST00000635958 CYP3A5P20815 502 aa15.2■□□□□ 0.02
CLN3-242ENST00000635958 PIK3CAP42336 1068 aa15.2■□□□□ 0.02
CLN3-242ENST00000635958 CLCN6P51797 869 aa15.2■□□□□ 0.02
CLN3-242ENST00000635958 GOLGA8FQ08AF8 430 aa15.2■□□□□ 0.02
CLN3-242ENST00000635958 GOLGA8DPQ0D2H9 430 aa15.2■□□□□ 0.02
CLN3-242ENST00000635958 SGSM1Q2NKQ1 1148 aa15.2■□□□□ 0.02
CLN3-242ENST00000635958 IQCEQ6IPM2 695 aa15.2■□□□□ 0.02
CLN3-242ENST00000635958 CACNA2D4Q7Z3S7 1137 aa15.2■□□□□ 0.02
CLN3-242ENST00000635958 TMEM139Q8IV31 216 aa15.2■□□□□ 0.02
CLN3-242ENST00000635958 HELQQ8TDG4 1101 aa15.2■□□□□ 0.02
CLN3-242ENST00000635958 RABGGTAQ92696 567 aa15.2■□□□□ 0.02
CLN3-242ENST00000635958 TAF4BQ92750 862 aa15.2■□□□□ 0.02
CLN3-242ENST00000635958 TRIM43Q96BQ3 446 aaPredicted RBP15.2■□□□□ 0.02
CLN3-242ENST00000635958 VWCEQ96DN2 955 aa15.2■□□□□ 0.02
CLN3-242ENST00000635958 FAXDC2Q96IV6 333 aa15.2■□□□□ 0.02
CLN3-242ENST00000635958 FAM81BQ96LP2 452 aa15.2■□□□□ 0.02
CLN3-242ENST00000635958 NT5C1BQ96P26 610 aa15.2■□□□□ 0.02
CLN3-242ENST00000635958 STK33Q9BYT3 514 aa15.2■□□□□ 0.02
CLN3-242ENST00000635958 ELAC1Q9H777 363 aaKnown RBP15.2■□□□□ 0.02
CLN3-242ENST00000635958 DPP3Q9NY33 737 aa15.2■□□□□ 0.02
CLN3-242ENST00000635958 KLK14Q9P0G3 267 aa15.2■□□□□ 0.02
CLN3-242ENST00000635958 ITGA11Q9UKX5 1188 aa15.2■□□□□ 0.02
CLN3-242ENST00000635958 UBQLN1Q9UMX0 589 aaKnown RBP15.2■□□□□ 0.02
CLN3-242ENST00000635958 PLAGL2Q9UPG8 496 aa15.2■□□□□ 0.02
CLN3-242ENST00000635958 GTF3C5Q9Y5Q8 519 aaPredicted RBP15.2■□□□□ 0.02
CLN3-242ENST00000635958 FHOD1Q9Y613 1164 aa15.2■□□□□ 0.02
CLN3-242ENST00000635958 MEIS3P2A8K0S8 358 aa15.2■□□□□ 0.02
CLN3-242ENST00000635958 PTGESO14684 152 aa15.2■□□□□ 0.02
CLN3-242ENST00000635958 JAM2P57087 298 aa15.2■□□□□ 0.02
CLN3-242ENST00000635958 GCNT1Q02742 428 aa15.2■□□□□ 0.02
CLN3-242ENST00000635958 WDR44Q5JSH3 913 aa15.2■□□□□ 0.02
CLN3-242ENST00000635958 SCARA3Q6AZY7 606 aa15.2■□□□□ 0.02
CLN3-242ENST00000635958 PDXDC1Q6P996 788 aa15.2■□□□□ 0.02
CLN3-242ENST00000635958 GJB7Q6PEY0 223 aa15.2■□□□□ 0.02
CLN3-242ENST00000635958 PPP1R10Q96QC0 940 aaKnown RBP15.2■□□□□ 0.02
CLN3-242ENST00000635958 XYLT2Q9H1B5 865 aa15.2■□□□□ 0.02
CLN3-242ENST00000635958 VRTNQ9H8Y1 702 aa15.2■□□□□ 0.02
CLN3-242ENST00000635958 NLRC4Q9NPP4 1024 aa15.2■□□□□ 0.02
CLN3-242ENST00000635958 CALCOCO1Q9P1Z2 691 aa15.2■□□□□ 0.02
CLN3-242ENST00000635958 DNAJC12Q9UKB3 198 aa15.2■□□□□ 0.02
CLN3-242ENST00000635958 V9GYY5 206 aaPredicted RBP15.2■□□□□ 0.02
CLN3-242ENST00000635958 SCN5AQ14524 2016 aa15.19■□□□□ 0.02
CLN3-242ENST00000635958 PDCD11Q14690 1871 aaKnown RBP15.19■□□□□ 0.02
CLN3-242ENST00000635958 XPOTO43592 962 aaKnown RBP15.19■□□□□ 0.02
CLN3-242ENST00000635958 STAU1O95793 577 aaKnown RBP15.19■□□□□ 0.02
CLN3-242ENST00000635958 ATICP31939 592 aa15.19■□□□□ 0.02
CLN3-242ENST00000635958 RBP5P82980 135 aa15.19■□□□□ 0.02
CLN3-242ENST00000635958 TRPC3Q13507 836 aa15.19■□□□□ 0.02
CLN3-242ENST00000635958 MEA1Q16626 185 aa15.19■□□□□ 0.02
CLN3-242ENST00000635958 TCTN1Q2MV58 587 aa15.19■□□□□ 0.02
CLN3-242ENST00000635958 RRAGAQ7L523 313 aa15.19■□□□□ 0.02
CLN3-242ENST00000635958 ENOSF1Q7L5Y1 443 aa15.19■□□□□ 0.02
CLN3-242ENST00000635958 ARHGEF19Q8IW93 802 aa15.19■□□□□ 0.02
CLN3-242ENST00000635958 BEST2Q8NFU1 509 aa15.19■□□□□ 0.02
CLN3-242ENST00000635958 LPPQ93052 612 aa15.19■□□□□ 0.02
CLN3-242ENST00000635958 TATDN2Q93075 761 aa15.19■□□□□ 0.02
CLN3-242ENST00000635958 GAD1Q99259 594 aa15.19■□□□□ 0.02
CLN3-242ENST00000635958 PI4K2AQ9BTU6 479 aa15.19■□□□□ 0.02
CLN3-242ENST00000635958 RSAD1Q9HA92 442 aa15.19■□□□□ 0.02
CLN3-242ENST00000635958 UBE2TQ9NPD8 197 aaPredicted RBP15.19■□□□□ 0.02
CLN3-242ENST00000635958 AIPL1Q9NZN9 384 aa15.19■□□□□ 0.02
CLN3-242ENST00000635958 AJAP1Q9UKB5 411 aaPredicted RBP15.19■□□□□ 0.02
CLN3-242ENST00000635958 ARL5CA6NH57 179 aa15.18■□□□□ 0.02
CLN3-242ENST00000635958 CCDC175P0C221 793 aa15.18■□□□□ 0.02
CLN3-242ENST00000635958 PNMA6AP0CW24 399 aaPredicted RBP15.18■□□□□ 0.02
CLN3-242ENST00000635958 ITGB8P26012 769 aa15.18■□□□□ 0.02
CLN3-242ENST00000635958 MYL6P60660 151 aa15.18■□□□□ 0.02
CLN3-242ENST00000635958 CDK17Q00537 523 aa15.18■□□□□ 0.02
CLN3-242ENST00000635958 NAB2Q15742 525 aa15.18■□□□□ 0.02
CLN3-242ENST00000635958 MFSD5Q6N075 450 aa15.18■□□□□ 0.02
CLN3-242ENST00000635958 WDR59Q6PJI9 974 aa15.18■□□□□ 0.02
CLN3-242ENST00000635958 CRIPAKQ8N1N5 446 aa15.18■□□□□ 0.02
CLN3-242ENST00000635958 JAKMIP2Q96AA8 810 aa15.18■□□□□ 0.02
CLN3-242ENST00000635958 ZFP42Q96MM3 310 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms