RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 RABEP1Q15276 862 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 FNDC3BQ53EP0 1204 aaKnown RBP1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 CCDC178Q5BJE1 867 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 FAM47AQ5JRC9 791 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 AFMIDQ63HM1 303 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 CDCA2Q69YH5 1023 aaPredicted RBP1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 SUMO4Q6EEV6 95 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 SLC18B1Q6NT16 456 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 GIMAP6Q6P9H5 292 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 VWA1Q6PCB0 445 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 UBE3BQ7Z3V4 1068 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 NEK8Q86SG6 692 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 JAZF1Q86VZ6 243 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 ZDHHC17Q8IUH5 632 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 PASD1Q8IV76 773 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 CNGA4Q8IV77 575 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 DRC7Q8IY82 874 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 NIM1KQ8IY84 436 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 TRMT2AQ8IZ69 625 aaKnown RBP1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 AHI1Q8N157 1196 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 NXPE1Q8N323 547 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 CAMKK1Q8N5S9 505 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 SEMA6DQ8NFY4 1073 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 LPIN2Q92539 896 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 HMCESQ96FZ2 354 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 GPR101Q96P66 508 aaPredicted RBP1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 UHRF1Q96T88 793 aaPredicted RBP1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 NELL2Q99435 816 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 LDAHQ9H6V9 325 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 XPO5Q9HAV4 1204 aaKnown RBP eCLIP1.54□□□□□ -2.162e-8■■□□□ 13.5
SMARCB1-209ENST00000635578 FBXO34Q9NWN3 711 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 THG1LQ9NWX6 298 aaKnown RBP1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 TMEM260Q9NX78 707 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 HSFX1Q9UBD0 423 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 PRSS50Q9UI38 385 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 EDARQ9UNE0 448 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 PPP2R3BQ9Y5P8 575 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 ARHGEF11O15085 1522 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 RUSC2Q8N2Y8 1516 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 BIVM-ERCC5R4GMW8 1640 aa1.54□□□□□ -2.16
SMARCB1-209ENST00000635578 FAM83GA6ND36 823 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 ZNF891A8MT65 544 aaPredicted RBP1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 KCNU1A8MYU2 1149 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 ERVV-2B6SEH9 535 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 SMIM22K7EJ46 135 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 MPPED1O15442 326 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 SYNJ1O43426 1573 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 AKR1B10O60218 316 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 TOP3BO95985 862 aaKnown RBP1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 LPLP06858 475 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 CCKARP32238 428 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 ARHGAP25P42331 645 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 ALDH1A3P47895 512 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 PLCD1P51178 756 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 KPNA1P52294 538 aaPredicted RBP1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 ZNF134P52741 427 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 GYS2P54840 703 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 SOX10P56693 466 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 ABCC8Q09428 1581 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 UBXN2BQ14CS0 331 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 LRRC41Q15345 812 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 MST1LQ2TV78 715 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 TKFCQ3LXA3 575 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 MIDNQ504T8 468 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 CEP78Q5JTW2 689 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 CEP170Q5SW79 1584 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 ATRNL1Q5VV63 1379 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 SDE2Q6IQ49 451 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 DNMBPQ6XZF7 1577 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 USP43Q70EL4 1123 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 ZNF572Q7Z3I7 529 aaPredicted RBP1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 CLASP1Q7Z460 1538 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 C11orf74Q86VG3 221 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 LRRTM3Q86VH5 581 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 LYSMD2Q8IV50 215 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 SYNPOQ8N3V7 929 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 EFHBQ8N7U6 833 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 UBR7Q8N806 425 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 ACRBPQ8NEB7 543 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 OR14C36Q8NHC7 312 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 SLC30A5Q8TAD4 765 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 CHTF18Q8WVB6 975 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 NINJ1Q92982 152 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 USP7Q93009 1102 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 MFSD3Q96ES6 412 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 CAMKK2Q96RR4 588 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 FEZ1Q99689 392 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 MYOCQ99972 504 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 VPS16Q9H269 839 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 MAGEC2Q9UBF1 373 aaPredicted RBP1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 MRC2Q9UBG0 1479 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 ATAD2BQ9ULI0 1458 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 CEP164Q9UPV0 1460 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 RUVBL1Q9Y265 456 aaKnown RBP1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 NUMBLQ9Y6R0 609 aa1.53□□□□□ -2.16
SMARCB1-209ENST00000635578 CACNA1IQ9P0X4 2223 aa1.52□□□□□ -2.17
SMARCB1-209ENST00000635578 FER1L4A9Z1Z3 1794 aa1.52□□□□□ -2.17
SMARCB1-209ENST00000635578 SETD1AO15047 1707 aaKnown RBP1.52□□□□□ -2.17
SMARCB1-209ENST00000635578 SHROOM2Q13796 1616 aa1.52□□□□□ -2.17
SMARCB1-209ENST00000635578 ZNF608Q9ULD9 1512 aaPredicted RBP1.52□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms