RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 CEP57Q86XR8 500 aa13.75□□□□□ -0.21
PNKP-217ENST00000625216 PALB2Q86YC2 1186 aa13.75□□□□□ -0.21
PNKP-217ENST00000625216 TDRD5Q8NAT2 981 aaKnown RBP13.75□□□□□ -0.21
PNKP-217ENST00000625216 LNX1Q8TBB1 728 aaPredicted RBP13.75□□□□□ -0.21
PNKP-217ENST00000625216 CCDC47Q96A33 483 aaKnown RBP13.75□□□□□ -0.21
PNKP-217ENST00000625216 ACSF2Q96CM8 615 aaPredicted RBP13.75□□□□□ -0.21
PNKP-217ENST00000625216 ZBTB45Q96K62 511 aaPredicted RBP13.75□□□□□ -0.21
PNKP-217ENST00000625216 B3GALT6Q96L58 329 aa13.75□□□□□ -0.21
PNKP-217ENST00000625216 SNX27Q96L92 541 aa13.75□□□□□ -0.21
PNKP-217ENST00000625216 MFSD14AQ96MC6 490 aa13.75□□□□□ -0.21
PNKP-217ENST00000625216 MED15Q96RN5 788 aa13.75□□□□□ -0.21
PNKP-217ENST00000625216 FGFBP2Q9BYJ0 223 aa13.75□□□□□ -0.21
PNKP-217ENST00000625216 PANK4Q9NVE7 773 aa13.75□□□□□ -0.21
PNKP-217ENST00000625216 ZDHHC7Q9NXF8 308 aa13.75□□□□□ -0.21
PNKP-217ENST00000625216 CNTN3Q9P232 1028 aa13.75□□□□□ -0.21
PNKP-217ENST00000625216 CACNG4Q9UBN1 327 aa13.75□□□□□ -0.21
PNKP-217ENST00000625216 CDH22Q9UJ99 828 aa13.75□□□□□ -0.21
PNKP-217ENST00000625216 C2CD4DB7Z1M9 353 aa13.74□□□□□ -0.21
PNKP-217ENST00000625216 TGM5O43548 720 aa13.74□□□□□ -0.21
PNKP-217ENST00000625216 TBCAO75347 108 aaKnown RBP13.74□□□□□ -0.21
PNKP-217ENST00000625216 PIGRP01833 764 aa13.74□□□□□ -0.21
PNKP-217ENST00000625216 CLTAP09496 248 aa13.74□□□□□ -0.21
PNKP-217ENST00000625216 FGFR3P22607 806 aa13.74□□□□□ -0.21
PNKP-217ENST00000625216 STK4Q13043 487 aa13.74□□□□□ -0.21
PNKP-217ENST00000625216 NCAPHQ15003 741 aa13.74□□□□□ -0.21
PNKP-217ENST00000625216 PSMD5Q16401 504 aa13.74□□□□□ -0.21
PNKP-217ENST00000625216 CCDC149Q6ZUS6 474 aa13.74□□□□□ -0.21
PNKP-217ENST00000625216 RTL10Q7L3V2 364 aa13.74□□□□□ -0.21
PNKP-217ENST00000625216 SFR1Q86XK3 245 aa13.74□□□□□ -0.21
PNKP-217ENST00000625216 CCDC65Q8IXS2 484 aa13.74□□□□□ -0.21
PNKP-217ENST00000625216 KREMEN2Q8NCW0 462 aa13.74□□□□□ -0.21
PNKP-217ENST00000625216 GLIS3Q8NEA6 775 aa13.74□□□□□ -0.21
PNKP-217ENST00000625216 HASPINQ8TF76 798 aa13.74□□□□□ -0.21
PNKP-217ENST00000625216 BICD1Q96G01 975 aa13.74□□□□□ -0.21
PNKP-217ENST00000625216 TSPAN18Q96SJ8 248 aa13.74□□□□□ -0.21
PNKP-217ENST00000625216 CLSTN3Q9BQT9 956 aa13.74□□□□□ -0.21
PNKP-217ENST00000625216 ST6GALNAC4Q9H4F1 302 aa13.74□□□□□ -0.21
PNKP-217ENST00000625216 ANKFY1Q9P2R3 1169 aa13.74□□□□□ -0.21
PNKP-217ENST00000625216 DACH1Q9UI36 760 aa13.74□□□□□ -0.21
PNKP-217ENST00000625216 TBX20Q9UMR3 447 aa13.74□□□□□ -0.21
PNKP-217ENST00000625216 CTNND2Q9UQB3 1225 aa13.74□□□□□ -0.21
PNKP-217ENST00000625216 HARSP12081 509 aaKnown RBP13.73□□□□□ -0.21
PNKP-217ENST00000625216 PRCPP42785 496 aa13.73□□□□□ -0.21
PNKP-217ENST00000625216 MATR3P43243 847 aaKnown RBP eCLIP13.73□□□□□ -0.21
PNKP-217ENST00000625216 LIG4P49917 911 aa13.73□□□□□ -0.21
PNKP-217ENST00000625216 GTF2BQ00403 316 aa13.73□□□□□ -0.21
PNKP-217ENST00000625216 SIGLEC14Q08ET2 396 aa13.73□□□□□ -0.21
PNKP-217ENST00000625216 SLC10A6Q3KNW5 377 aa13.73□□□□□ -0.21
PNKP-217ENST00000625216 COBLL1Q53SF7 1204 aa13.73□□□□□ -0.21
PNKP-217ENST00000625216 FAM26FQ5R3K3 315 aa13.73□□□□□ -0.21
PNKP-217ENST00000625216 L1TD1Q5T7N2 865 aaKnown RBP13.73□□□□□ -0.21
PNKP-217ENST00000625216 KLHL10Q6JEL2 608 aa13.73□□□□□ -0.21
PNKP-217ENST00000625216 PRSS55Q6UWB4 352 aaPredicted RBP13.73□□□□□ -0.21
PNKP-217ENST00000625216 ANKS3Q6ZW76 656 aa13.73□□□□□ -0.21
PNKP-217ENST00000625216 UBALD2Q8IYN6 164 aa13.73□□□□□ -0.21
PNKP-217ENST00000625216 ADSSL1Q8N142 457 aa13.73□□□□□ -0.21
PNKP-217ENST00000625216 ZMAT2Q96NC0 199 aaKnown RBP13.73□□□□□ -0.21
PNKP-217ENST00000625216 NAT10Q9H0A0 1025 aaKnown RBP13.73□□□□□ -0.21
PNKP-217ENST00000625216 KCNH6Q9H252 994 aa13.73□□□□□ -0.21
PNKP-217ENST00000625216 ZHX3Q9H4I2 956 aa13.73□□□□□ -0.21
PNKP-217ENST00000625216 WDR6Q9NNW5 1121 aaKnown RBP13.73□□□□□ -0.21
PNKP-217ENST00000625216 SLC39A2Q9NP94 309 aa13.73□□□□□ -0.21
PNKP-217ENST00000625216 SEL1LQ9UBV2 794 aa13.73□□□□□ -0.21
PNKP-217ENST00000625216 SORCS3Q9UPU3 1222 aa13.73□□□□□ -0.21
PNKP-217ENST00000625216 MAPK8IP1Q9UQF2 711 aa13.73□□□□□ -0.21
PNKP-217ENST00000625216 BACE2Q9Y5Z0 518 aa13.73□□□□□ -0.21
PNKP-217ENST00000625216 TMEM221A6NGB7 291 aa13.72□□□□□ -0.21
PNKP-217ENST00000625216 K7ENM7 598 aa13.72□□□□□ -0.21
PNKP-217ENST00000625216 M0R296 226 aa13.72□□□□□ -0.21
PNKP-217ENST00000625216 PODXLO00592 558 aa13.72□□□□□ -0.21
PNKP-217ENST00000625216 IKBKBO14920 756 aa13.72□□□□□ -0.21
PNKP-217ENST00000625216 HNRNPDLO14979 420 aaKnown RBP13.72□□□□□ -0.21
PNKP-217ENST00000625216 ZMYND10O75800 440 aa13.72□□□□□ -0.21
PNKP-217ENST00000625216 HNRNPA1P09651 372 aaKnown RBP eCLIP13.72□□□□□ -0.21
PNKP-217ENST00000625216 SPATA31D3P0C874 917 aa13.72□□□□□ -0.21
PNKP-217ENST00000625216 RPL17P18621 184 aaKnown RBP13.72□□□□□ -0.21
PNKP-217ENST00000625216 SP100P23497 879 aaPredicted RBP13.72□□□□□ -0.21
PNKP-217ENST00000625216 STX17P56962 302 aa13.72□□□□□ -0.21
PNKP-217ENST00000625216 MYL5Q02045 173 aa13.72□□□□□ -0.21
PNKP-217ENST00000625216 SOX4Q06945 474 aaPredicted RBP13.72□□□□□ -0.21
PNKP-217ENST00000625216 RAB33AQ14088 237 aa13.72□□□□□ -0.21
PNKP-217ENST00000625216 UVSSAQ2YD98 709 aa13.72□□□□□ -0.21
PNKP-217ENST00000625216 CD300LGQ6UXG3 332 aa13.72□□□□□ -0.21
PNKP-217ENST00000625216 SPATA31D4Q6ZUB0 917 aa13.72□□□□□ -0.21
PNKP-217ENST00000625216 HFE2Q6ZVN8 426 aa13.72□□□□□ -0.21
PNKP-217ENST00000625216 MAP4K3Q8IVH8 894 aa13.72□□□□□ -0.21
PNKP-217ENST00000625216 SMG7Q92540 1137 aaKnown RBP13.72□□□□□ -0.21
PNKP-217ENST00000625216 FIZ1Q96SL8 496 aa13.72□□□□□ -0.21
PNKP-217ENST00000625216 PRKD2Q9BZL6 878 aa13.72□□□□□ -0.21
PNKP-217ENST00000625216 PIDD1Q9HB75 910 aa13.72□□□□□ -0.21
PNKP-217ENST00000625216 GOLGA2P5Q9HBQ8 144 aa13.72□□□□□ -0.21
PNKP-217ENST00000625216 TBC1D7Q9P0N9 293 aa13.72□□□□□ -0.21
PNKP-217ENST00000625216 MTRRQ9UBK8 725 aa13.72□□□□□ -0.21
PNKP-217ENST00000625216 LIMD1Q9UGP4 676 aa13.72□□□□□ -0.21
PNKP-217ENST00000625216 TDRD15B5MCY1 1934 aaKnown RBP13.71□□□□□ -0.21
PNKP-217ENST00000625216 A0A0B4J269 797 aa13.71□□□□□ -0.21
PNKP-217ENST00000625216 TTC26A0AVF1 554 aa13.71□□□□□ -0.21
PNKP-217ENST00000625216 SYN3O14994 580 aa13.71□□□□□ -0.21
PNKP-217ENST00000625216 OGTO15294 1046 aa13.71□□□□□ -0.21
PNKP-217ENST00000625216 AP5Z1O43299 807 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms