RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 MTMR7Q9Y216 660 aa11.48□□□□□ -0.57
UPF3A-212ENST00000619079 PCDHAC2Q9Y5I4 1007 aa11.48□□□□□ -0.57
UPF3A-212ENST00000619079 TP73O15350 636 aa11.47□□□□□ -0.57
UPF3A-212ENST00000619079 PYGMP11217 842 aa11.47□□□□□ -0.57
UPF3A-212ENST00000619079 COMTP21964 271 aa11.47□□□□□ -0.57
UPF3A-212ENST00000619079 CHKAP35790 457 aa11.47□□□□□ -0.57
UPF3A-212ENST00000619079 ZNF280AP59817 542 aaPredicted RBP11.47□□□□□ -0.57
UPF3A-212ENST00000619079 TMED2Q15363 201 aa11.47□□□□□ -0.57
UPF3A-212ENST00000619079 SIX1Q15475 284 aaPredicted RBP11.47□□□□□ -0.57
UPF3A-212ENST00000619079 PPP1R18Q6NYC8 613 aa11.47□□□□□ -0.57
UPF3A-212ENST00000619079 RFWD3Q6PCD5 774 aa11.47□□□□□ -0.57
UPF3A-212ENST00000619079 CCDC174Q6PII3 467 aa11.47□□□□□ -0.57
UPF3A-212ENST00000619079 TRABD2AQ86V40 505 aa11.47□□□□□ -0.57
UPF3A-212ENST00000619079 DENND1AQ8TEH3 1009 aa11.47□□□□□ -0.57
UPF3A-212ENST00000619079 TTC25Q96NG3 672 aa11.47□□□□□ -0.57
UPF3A-212ENST00000619079 SMC6Q96SB8 1091 aa11.47□□□□□ -0.57
UPF3A-212ENST00000619079 DNAJC18Q9H819 358 aa11.47□□□□□ -0.57
UPF3A-212ENST00000619079 PPCSQ9HAB8 311 aa11.47□□□□□ -0.57
UPF3A-212ENST00000619079 ANAPC5Q9UJX4 755 aa11.47□□□□□ -0.57
UPF3A-212ENST00000619079 ZMYM2Q9UBW7 1377 aa11.47□□□□□ -0.57
UPF3A-212ENST00000619079 FAM196BA6NMK8 535 aa11.47□□□□□ -0.57
UPF3A-212ENST00000619079 GSC2O15499 205 aa11.47□□□□□ -0.57
UPF3A-212ENST00000619079 HAUS5O94927 633 aa11.47□□□□□ -0.57
UPF3A-212ENST00000619079 MARCKSL1P49006 195 aa11.47□□□□□ -0.57
UPF3A-212ENST00000619079 DSG1Q02413 1049 aa11.47□□□□□ -0.57
UPF3A-212ENST00000619079 USP4Q13107 963 aa11.47□□□□□ -0.57
UPF3A-212ENST00000619079 CTC1Q2NKJ3 1217 aa11.47□□□□□ -0.57
UPF3A-212ENST00000619079 SGO2Q562F6 1265 aa11.47□□□□□ -0.57
UPF3A-212ENST00000619079 TDRPQ86YL5 185 aa11.47□□□□□ -0.57
UPF3A-212ENST00000619079 ZNF784Q8NCA9 323 aaPredicted RBP11.47□□□□□ -0.57
UPF3A-212ENST00000619079 MAML1Q92585 1016 aa11.47□□□□□ -0.57
UPF3A-212ENST00000619079 CD101Q93033 1021 aa11.47□□□□□ -0.57
UPF3A-212ENST00000619079 HIC2Q96JB3 615 aa11.47□□□□□ -0.57
UPF3A-212ENST00000619079 PIGSQ96S52 555 aa11.47□□□□□ -0.57
UPF3A-212ENST00000619079 AGPAT1Q99943 283 aa11.47□□□□□ -0.57
UPF3A-212ENST00000619079 CYLDQ9NQC7 956 aa11.47□□□□□ -0.57
UPF3A-212ENST00000619079 NDUFA13Q9P0J0 144 aa11.47□□□□□ -0.57
UPF3A-212ENST00000619079 ANKFY1Q9P2R3 1169 aa11.47□□□□□ -0.57
UPF3A-212ENST00000619079 DNAJB4Q9UDY4 337 aa11.47□□□□□ -0.57
UPF3A-212ENST00000619079 G3BP2Q9UN86 482 aaKnown RBP11.47□□□□□ -0.57
UPF3A-212ENST00000619079 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.47□□□□□ -0.57
UPF3A-212ENST00000619079 POTECB2RU33 542 aa11.46□□□□□ -0.57
UPF3A-212ENST00000619079 F8W8V4 182 aa11.46□□□□□ -0.57
UPF3A-212ENST00000619079 WNT10BO00744 389 aa11.46□□□□□ -0.57
UPF3A-212ENST00000619079 SPOPO43791 374 aa11.46□□□□□ -0.57
UPF3A-212ENST00000619079 EXOC3O60645 756 aa11.46□□□□□ -0.57
UPF3A-212ENST00000619079 CCDC166P0CW27 439 aa11.46□□□□□ -0.57
UPF3A-212ENST00000619079 PSMC2P35998 433 aaKnown RBP11.46□□□□□ -0.57
UPF3A-212ENST00000619079 KCNJ1P48048 391 aa11.46□□□□□ -0.57
UPF3A-212ENST00000619079 TNNI2P48788 182 aa11.46□□□□□ -0.57
UPF3A-212ENST00000619079 ITGA8P53708 1063 aa11.46□□□□□ -0.57
UPF3A-212ENST00000619079 CACNB1Q02641 598 aaPredicted RBP11.46□□□□□ -0.57
UPF3A-212ENST00000619079 SLC4A8Q2Y0W8 1093 aa11.46□□□□□ -0.57
UPF3A-212ENST00000619079 TMEM63BQ5T3F8 832 aa11.46□□□□□ -0.57
UPF3A-212ENST00000619079 HHIPL2Q6UWX4 724 aa11.46□□□□□ -0.57
UPF3A-212ENST00000619079 USP50Q70EL3 339 aaPredicted RBP11.46□□□□□ -0.57
UPF3A-212ENST00000619079 MARK2Q7KZI7 788 aaKnown RBP11.46□□□□□ -0.57
UPF3A-212ENST00000619079 MTDHQ86UE4 582 aaKnown RBP11.46□□□□□ -0.57
UPF3A-212ENST00000619079 SYCP3Q8IZU3 236 aa11.46□□□□□ -0.57
UPF3A-212ENST00000619079 HAS1Q92839 578 aa11.46□□□□□ -0.57
UPF3A-212ENST00000619079 NSL1Q96IY1 281 aa11.46□□□□□ -0.57
UPF3A-212ENST00000619079 CFAP57Q96MR6 1250 aa11.46□□□□□ -0.57
UPF3A-212ENST00000619079 MKNK1Q9BUB5 465 aa11.46□□□□□ -0.57
UPF3A-212ENST00000619079 SLCO1B3Q9NPD5 702 aa11.46□□□□□ -0.57
UPF3A-212ENST00000619079 APEX2Q9UBZ4 518 aa11.46□□□□□ -0.57
UPF3A-212ENST00000619079 DAGLAQ9Y4D2 1042 aa11.46□□□□□ -0.57
UPF3A-212ENST00000619079 PSME4Q14997 1843 aa11.46□□□□□ -0.58
UPF3A-212ENST00000619079 NPHP3-ACAD11A0A0J9YXS1 232 aa11.46□□□□□ -0.58
UPF3A-212ENST00000619079 CLRN2A0PK11 232 aa11.46□□□□□ -0.58
UPF3A-212ENST00000619079 SPDYE2BA6NHP3 402 aa11.46□□□□□ -0.58
UPF3A-212ENST00000619079 TMEM110-MUSTN1A8MSY1 372 aa11.46□□□□□ -0.58
UPF3A-212ENST00000619079 FOXO6A8MYZ6 492 aa11.46□□□□□ -0.58
UPF3A-212ENST00000619079 FSCN2O14926 492 aa11.46□□□□□ -0.58
UPF3A-212ENST00000619079 TMCC1O94876 653 aa11.46□□□□□ -0.58
UPF3A-212ENST00000619079 SPDYE6P0CI01 402 aa11.46□□□□□ -0.58
UPF3A-212ENST00000619079 BTDP43251 543 aa11.46□□□□□ -0.58
UPF3A-212ENST00000619079 CASP5P51878 434 aa11.46□□□□□ -0.58
UPF3A-212ENST00000619079 SLC12A3P55017 1021 aa11.46□□□□□ -0.58
UPF3A-212ENST00000619079 MESDQ14696 234 aa11.46□□□□□ -0.58
UPF3A-212ENST00000619079 DBN1Q16643 649 aa11.46□□□□□ -0.58
UPF3A-212ENST00000619079 CCDC62Q6P9F0 684 aa11.46□□□□□ -0.58
UPF3A-212ENST00000619079 SEPT14Q6ZU15 432 aa11.46□□□□□ -0.58
UPF3A-212ENST00000619079 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.46□□□□□ -0.58
UPF3A-212ENST00000619079 PHLDB2Q86SQ0 1253 aa11.46□□□□□ -0.58
UPF3A-212ENST00000619079 SH3RF3Q8TEJ3 882 aaPredicted RBP11.46□□□□□ -0.58
UPF3A-212ENST00000619079 PPP1R14BQ96C90 147 aa11.46□□□□□ -0.58
UPF3A-212ENST00000619079 PTCD3Q96EY7 689 aaKnown RBP11.46□□□□□ -0.58
UPF3A-212ENST00000619079 PRMT6Q96LA8 375 aaPredicted RBP11.46□□□□□ -0.58
UPF3A-212ENST00000619079 ZDHHC15Q96MV8 337 aa11.46□□□□□ -0.58
UPF3A-212ENST00000619079 TRABDQ9H4I3 376 aa11.46□□□□□ -0.58
UPF3A-212ENST00000619079 TAS2R14Q9NYV8 317 aa11.46□□□□□ -0.58
UPF3A-212ENST00000619079 TMOD2Q9NZR1 351 aa11.46□□□□□ -0.58
UPF3A-212ENST00000619079 GSTTP1A0A1W2PQM5 241 aa11.45□□□□□ -0.58
UPF3A-212ENST00000619079 TCRBV7S2A1N4TA0A589 114 aa11.45□□□□□ -0.58
UPF3A-212ENST00000619079 FTLP02792 175 aaPredicted RBP11.45□□□□□ -0.58
UPF3A-212ENST00000619079 PABPC4LP0CB38 370 aaKnown RBP11.45□□□□□ -0.58
UPF3A-212ENST00000619079 UBTFL6P0CB48 400 aaPredicted RBP11.45□□□□□ -0.58
UPF3A-212ENST00000619079 BCRP11274 1271 aa11.45□□□□□ -0.58
UPF3A-212ENST00000619079 CETPP11597 493 aa11.45□□□□□ -0.58
UPF3A-212ENST00000619079 TPP2P29144 1249 aaPredicted RBP11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms