RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 MRPL17Q9NRX2 175 aaKnown RBP17.89■□□□□ 0.45
CCDC28A-202ENST00000611852 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP17.88■□□□□ 0.45
CCDC28A-202ENST00000611852 TMEM191BP0C7N4 346 aa17.88■□□□□ 0.45
CCDC28A-202ENST00000611852 TNNI1P19237 187 aa17.88■□□□□ 0.45
CCDC28A-202ENST00000611852 CA8P35219 290 aa17.88■□□□□ 0.45
CCDC28A-202ENST00000611852 GTF2F1P35269 517 aaKnown RBP eCLIP17.88■□□□□ 0.45
CCDC28A-202ENST00000611852 HYAL1Q12794 435 aa17.88■□□□□ 0.45
CCDC28A-202ENST00000611852 DUOXA2Q1HG44 320 aa17.88■□□□□ 0.45
CCDC28A-202ENST00000611852 RTP2Q5QGT7 225 aa17.88■□□□□ 0.45
CCDC28A-202ENST00000611852 KIAA1841Q6NSI8 718 aa17.88■□□□□ 0.45
CCDC28A-202ENST00000611852 RBM43Q6ZSC3 357 aaKnown RBP17.88■□□□□ 0.45
CCDC28A-202ENST00000611852 RBM23Q86U06 439 aaKnown RBP17.88■□□□□ 0.45
CCDC28A-202ENST00000611852 ZC3H3Q8IXZ2 948 aaKnown RBP17.88■□□□□ 0.45
CCDC28A-202ENST00000611852 CXorf38Q8TB03 319 aa17.88■□□□□ 0.45
CCDC28A-202ENST00000611852 PARD3BQ8TEW8 1205 aa17.88■□□□□ 0.45
CCDC28A-202ENST00000611852 NELFBQ8WX92 580 aa17.88■□□□□ 0.45
CCDC28A-202ENST00000611852 CGRRF1Q99675 332 aa17.88■□□□□ 0.45
CCDC28A-202ENST00000611852 TTPALQ9BTX7 342 aa17.88■□□□□ 0.45
CCDC28A-202ENST00000611852 TLE6Q9H808 572 aa17.88■□□□□ 0.45
CCDC28A-202ENST00000611852 VWA8A3KMH1 1905 aa17.88■□□□□ 0.45
CCDC28A-202ENST00000611852 C2CD2LO14523 706 aa17.88■□□□□ 0.45
CCDC28A-202ENST00000611852 PER2O15055 1255 aa17.88■□□□□ 0.45
CCDC28A-202ENST00000611852 CETN3O15182 167 aa17.88■□□□□ 0.45
CCDC28A-202ENST00000611852 ITGB3P05106 788 aa17.88■□□□□ 0.45
CCDC28A-202ENST00000611852 FGFR3P22607 806 aa17.88■□□□□ 0.45
CCDC28A-202ENST00000611852 NRIP1P48552 1158 aa17.88■□□□□ 0.45
CCDC28A-202ENST00000611852 AARSP49588 968 aaKnown RBP eCLIP17.88■□□□□ 0.45
CCDC28A-202ENST00000611852 LILRA4P59901 499 aa17.88■□□□□ 0.45
CCDC28A-202ENST00000611852 CLDN10P78369 228 aa17.88■□□□□ 0.45
CCDC28A-202ENST00000611852 FKBP3Q00688 224 aaKnown RBP17.88■□□□□ 0.45
CCDC28A-202ENST00000611852 SCARA3Q6AZY7 606 aa17.88■□□□□ 0.45
CCDC28A-202ENST00000611852 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.88■□□□□ 0.45
CCDC28A-202ENST00000611852 CEP57Q86XR8 500 aa17.88■□□□□ 0.45
CCDC28A-202ENST00000611852 GPR65Q8IYL9 337 aa17.88■□□□□ 0.45
CCDC28A-202ENST00000611852 ANKRD36BP1Q96IX9 119 aa17.88■□□□□ 0.45
CCDC28A-202ENST00000611852 SUSD3Q96L08 255 aa17.88■□□□□ 0.45
CCDC28A-202ENST00000611852 SIX4Q9UIU6 781 aa17.88■□□□□ 0.45
CCDC28A-202ENST00000611852 ITGA11Q9UKX5 1188 aa17.88■□□□□ 0.45
CCDC28A-202ENST00000611852 CTNND2Q9UQB3 1225 aa17.88■□□□□ 0.45
CCDC28A-202ENST00000611852 SSX2IPQ9Y2D8 614 aa17.88■□□□□ 0.45
CCDC28A-202ENST00000611852 SCN1AP35498 2009 aa17.87■□□□□ 0.45
CCDC28A-202ENST00000611852 LRRIQ3A6PVS8 624 aaPredicted RBP17.87■□□□□ 0.45
CCDC28A-202ENST00000611852 TNNC2P02585 160 aa17.87■□□□□ 0.45
CCDC28A-202ENST00000611852 TKTP29401 623 aaKnown RBP17.87■□□□□ 0.45
CCDC28A-202ENST00000611852 PSMC2P35998 433 aaKnown RBP17.87■□□□□ 0.45
CCDC28A-202ENST00000611852 PAK1Q13153 545 aa17.87■□□□□ 0.45
CCDC28A-202ENST00000611852 COL19A1Q14993 1142 aa17.87■□□□□ 0.45
CCDC28A-202ENST00000611852 DUSP6Q16828 381 aa17.87■□□□□ 0.45
CCDC28A-202ENST00000611852 TTI2Q6NXR4 508 aa17.87■□□□□ 0.45
CCDC28A-202ENST00000611852 FOXR2Q6PJQ5 311 aa17.87■□□□□ 0.45
CCDC28A-202ENST00000611852 FAM186BQ8IYM0 893 aa17.87■□□□□ 0.45
CCDC28A-202ENST00000611852 CSGALNACT2Q8N6G5 542 aa17.87■□□□□ 0.45
CCDC28A-202ENST00000611852 TMC2Q8TDI7 906 aa17.87■□□□□ 0.45
CCDC28A-202ENST00000611852 RIN2Q8WYP3 895 aaPredicted RBP17.87■□□□□ 0.45
CCDC28A-202ENST00000611852 ZNF516Q92618 1163 aa17.87■□□□□ 0.45
CCDC28A-202ENST00000611852 CDCA3Q99618 268 aaPredicted RBP17.87■□□□□ 0.45
CCDC28A-202ENST00000611852 DUSP9Q99956 384 aaKnown RBP17.87■□□□□ 0.45
CCDC28A-202ENST00000611852 MKNK1Q9BUB5 465 aa17.87■□□□□ 0.45
CCDC28A-202ENST00000611852 AGAP1Q9UPQ3 857 aa17.87■□□□□ 0.45
CCDC28A-202ENST00000611852 PRUNE2Q8WUY3 3088 aa17.86■□□□□ 0.45
CCDC28A-202ENST00000611852 BICDL2A1A5D9 508 aa17.86■□□□□ 0.45
CCDC28A-202ENST00000611852 M0QZQ0 153 aa17.86■□□□□ 0.45
CCDC28A-202ENST00000611852 SYN3O14994 580 aa17.86■□□□□ 0.45
CCDC28A-202ENST00000611852 SPTLC1O15269 473 aa17.86■□□□□ 0.45
CCDC28A-202ENST00000611852 CNPP09543 421 aaKnown RBP17.86■□□□□ 0.45
CCDC28A-202ENST00000611852 POLR2BP30876 1174 aaKnown RBP17.86■□□□□ 0.45
CCDC28A-202ENST00000611852 DLG4P78352 724 aa17.86■□□□□ 0.45
CCDC28A-202ENST00000611852 SKIV2LQ15477 1246 aaKnown RBP17.86■□□□□ 0.45
CCDC28A-202ENST00000611852 CCDC183Q5T5S1 534 aa17.86■□□□□ 0.45
CCDC28A-202ENST00000611852 PRSS55Q6UWB4 352 aaPredicted RBP17.86■□□□□ 0.45
CCDC28A-202ENST00000611852 INTS8Q75QN2 995 aaKnown RBP17.86■□□□□ 0.45
CCDC28A-202ENST00000611852 TRAPPC11Q7Z392 1133 aa17.86■□□□□ 0.45
CCDC28A-202ENST00000611852 MLKLQ8NB16 471 aa17.86■□□□□ 0.45
CCDC28A-202ENST00000611852 LNX1Q8TBB1 728 aaPredicted RBP17.86■□□□□ 0.45
CCDC28A-202ENST00000611852 PIK3R5Q8WYR1 880 aa17.86■□□□□ 0.45
CCDC28A-202ENST00000611852 IGFLR1Q9H665 355 aa17.86■□□□□ 0.45
CCDC28A-202ENST00000611852 RXFP1Q9HBX9 757 aa17.86■□□□□ 0.45
CCDC28A-202ENST00000611852 BRWD1Q9NSI6 2320 aa17.86■□□□□ 0.45
CCDC28A-202ENST00000611852 TEX28O15482 410 aa17.85■□□□□ 0.45
CCDC28A-202ENST00000611852 NCK2O43639 380 aa17.85■□□□□ 0.45
CCDC28A-202ENST00000611852 KRT19P08727 400 aa17.85■□□□□ 0.45
CCDC28A-202ENST00000611852 PAX3P23760 479 aa17.85■□□□□ 0.45
CCDC28A-202ENST00000611852 TAF6P49848 677 aa17.85■□□□□ 0.45
CCDC28A-202ENST00000611852 STX17P56962 302 aa17.85■□□□□ 0.45
CCDC28A-202ENST00000611852 NLRP12P59046 1061 aa17.85■□□□□ 0.45
CCDC28A-202ENST00000611852 MCCD1P59942 119 aaPredicted RBP17.85■□□□□ 0.45
CCDC28A-202ENST00000611852 RBP5P82980 135 aa17.85■□□□□ 0.45
CCDC28A-202ENST00000611852 DPCR1Q3MIW9 517 aa17.85■□□□□ 0.45
CCDC28A-202ENST00000611852 EFHBQ8N7U6 833 aa17.85■□□□□ 0.45
CCDC28A-202ENST00000611852 BORCS6Q96GS4 357 aa17.85■□□□□ 0.45
CCDC28A-202ENST00000611852 KLHL5Q96PQ7 755 aa17.85■□□□□ 0.45
CCDC28A-202ENST00000611852 EMILIN2Q9BXX0 1053 aa17.85■□□□□ 0.45
CCDC28A-202ENST00000611852 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.85■□□□□ 0.45
CCDC28A-202ENST00000611852 TMEM63CQ9P1W3 806 aa17.85■□□□□ 0.45
CCDC28A-202ENST00000611852 SLC16A3O15427 465 aaKnown RBP17.84■□□□□ 0.45
CCDC28A-202ENST00000611852 CLASP2O75122 1294 aaKnown RBP17.84■□□□□ 0.45
CCDC28A-202ENST00000611852 KRT13P13646 458 aa17.84■□□□□ 0.45
CCDC28A-202ENST00000611852 PNPLA4P41247 253 aa17.84■□□□□ 0.45
CCDC28A-202ENST00000611852 VAMP7P51809 220 aa17.84■□□□□ 0.45
CCDC28A-202ENST00000611852 AP3M2P53677 418 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms