RNA–Protein interactions for RNA: ENST00000611712.4

LIG4-204, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 4 BASIC

Gene LIG4, Length 4,180 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-204ENST00000611712 STRIP2Q9ULQ0 834 aa9.2□□□□□ -0.94
LIG4-204ENST00000611712 ARL2BPQ9Y2Y0 163 aa9.2□□□□□ -0.94
LIG4-204ENST00000611712 RIPK2O43353 540 aa9.2□□□□□ -0.94
LIG4-204ENST00000611712 PRPSAP2O60256 369 aa9.2□□□□□ -0.94
LIG4-204ENST00000611712 VCAM1P19320 739 aa9.2□□□□□ -0.94
LIG4-204ENST00000611712 SESN3P58005 492 aa9.2□□□□□ -0.94
LIG4-204ENST00000611712 CUL2Q13617 745 aa9.2□□□□□ -0.94
LIG4-204ENST00000611712 CLEC16AQ2KHT3 1053 aa9.2□□□□□ -0.94
LIG4-204ENST00000611712 DUPD1Q68J44 220 aa9.2□□□□□ -0.94
LIG4-204ENST00000611712 XRRA1Q6P2D8 792 aa9.2□□□□□ -0.94
LIG4-204ENST00000611712 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.2□□□□□ -0.94
LIG4-204ENST00000611712 RASGEF1CQ8N431 466 aa9.2□□□□□ -0.94
LIG4-204ENST00000611712 TTC13Q8NBP0 860 aa9.2□□□□□ -0.94
LIG4-204ENST00000611712 FEZF2Q8TBJ5 459 aa9.2□□□□□ -0.94
LIG4-204ENST00000611712 N4BP2L2Q92802 583 aaPredicted RBP9.2□□□□□ -0.94
LIG4-204ENST00000611712 TRABDQ9H4I3 376 aa9.2□□□□□ -0.94
LIG4-204ENST00000611712 NR2E1Q9Y466 385 aa9.2□□□□□ -0.94
LIG4-204ENST00000611712 DOT1LQ8TEK3 1739 aa9.2□□□□□ -0.94
LIG4-204ENST00000611712 PPFIA2O75334 1257 aa9.2□□□□□ -0.94
LIG4-204ENST00000611712 CIB2O75838 187 aa9.2□□□□□ -0.94
LIG4-204ENST00000611712 STK10O94804 968 aaKnown RBP9.2□□□□□ -0.94
LIG4-204ENST00000611712 KRT10P13645 584 aa9.2□□□□□ -0.94
LIG4-204ENST00000611712 DPEP1P16444 411 aa9.2□□□□□ -0.94
LIG4-204ENST00000611712 GARTP22102 1010 aa9.2□□□□□ -0.94
LIG4-204ENST00000611712 GTF2H1P32780 548 aa9.2□□□□□ -0.94
LIG4-204ENST00000611712 CFAP157Q5JU67 520 aa9.2□□□□□ -0.94
LIG4-204ENST00000611712 SULF1Q8IWU6 871 aa9.2□□□□□ -0.94
LIG4-204ENST00000611712 C4orf33Q8N1A6 199 aa9.2□□□□□ -0.94
LIG4-204ENST00000611712 ARHGAP24Q8N264 748 aa9.2□□□□□ -0.94
LIG4-204ENST00000611712 ACSF2Q96CM8 615 aaPredicted RBP9.2□□□□□ -0.94
LIG4-204ENST00000611712 SGSM3Q96HU1 749 aa9.2□□□□□ -0.94
LIG4-204ENST00000611712 LRRC37BQ96QE4 947 aa9.2□□□□□ -0.94
LIG4-204ENST00000611712 DDX23Q9BUQ8 820 aaKnown RBP9.2□□□□□ -0.94
LIG4-204ENST00000611712 ERVK-5Q9HDB9 667 aa9.2□□□□□ -0.94
LIG4-204ENST00000611712 WHRNQ9P202 907 aa9.2□□□□□ -0.94
LIG4-204ENST00000611712 SLIT2O94813 1529 aa9.19□□□□□ -0.94
LIG4-204ENST00000611712 CFAP73A6NFT4 308 aa9.19□□□□□ -0.94
LIG4-204ENST00000611712 KRT7P08729 469 aa9.19□□□□□ -0.94
LIG4-204ENST00000611712 WEE2P0C1S8 567 aa9.19□□□□□ -0.94
LIG4-204ENST00000611712 KRT3P12035 628 aa9.19□□□□□ -0.94
LIG4-204ENST00000611712 SCTRP47872 440 aa9.19□□□□□ -0.94
LIG4-204ENST00000611712 CENPCQ03188 943 aa9.19□□□□□ -0.94
LIG4-204ENST00000611712 CXCL9Q07325 125 aa9.19□□□□□ -0.94
LIG4-204ENST00000611712 NFX1Q12986 1120 aaKnown RBP9.19□□□□□ -0.94
LIG4-204ENST00000611712 NIPA1Q7RTP0 329 aa9.19□□□□□ -0.94
LIG4-204ENST00000611712 FAM83AQ86UY5 434 aa9.19□□□□□ -0.94
LIG4-204ENST00000611712 FAM71AQ8IYT1 594 aa9.19□□□□□ -0.94
LIG4-204ENST00000611712 MCOLN2Q8IZK6 566 aa9.19□□□□□ -0.94
LIG4-204ENST00000611712 C7orf31Q8N865 590 aa9.19□□□□□ -0.94
LIG4-204ENST00000611712 ZKSCAN4Q969J2 545 aaPredicted RBP9.19□□□□□ -0.94
LIG4-204ENST00000611712 CD248Q9HCU0 757 aa9.19□□□□□ -0.94
LIG4-204ENST00000611712 FBXO40Q9UH90 709 aa9.19□□□□□ -0.94
LIG4-204ENST00000611712 CNOT7Q9UIV1 285 aaKnown RBP9.19□□□□□ -0.94
LIG4-204ENST00000611712 DCTN4Q9UJW0 460 aa9.19□□□□□ -0.94
LIG4-204ENST00000611712 GTF2BQ00403 316 aa9.19□□□□□ -0.94
LIG4-204ENST00000611712 PPP2R5DQ14738 602 aa9.19□□□□□ -0.94
LIG4-204ENST00000611712 HIF1AQ16665 826 aa9.19□□□□□ -0.94
LIG4-204ENST00000611712 WDR72Q3MJ13 1102 aa9.19□□□□□ -0.94
LIG4-204ENST00000611712 CYB5D1Q6P9G0 228 aa9.19□□□□□ -0.94
LIG4-204ENST00000611712 EXOC8Q8IYI6 725 aa9.19□□□□□ -0.94
LIG4-204ENST00000611712 SCYL3Q8IZE3 742 aa9.19□□□□□ -0.94
LIG4-204ENST00000611712 PGM2Q96G03 612 aa9.19□□□□□ -0.94
LIG4-204ENST00000611712 CFAP36Q96G28 342 aa9.19□□□□□ -0.94
LIG4-204ENST00000611712 FAM167AQ96KS9 214 aa9.19□□□□□ -0.94
LIG4-204ENST00000611712 PPP1R12CQ9BZL4 782 aa9.19□□□□□ -0.94
LIG4-204ENST00000611712 DDX56Q9NY93 547 aaKnown RBP9.19□□□□□ -0.94
LIG4-204ENST00000611712 A0A0G2JND7 137 aa9.19□□□□□ -0.94
LIG4-204ENST00000611712 DDX3YO15523 660 aaKnown RBP9.19□□□□□ -0.94
LIG4-204ENST00000611712 ATP9AO75110 1047 aa9.19□□□□□ -0.94
LIG4-204ENST00000611712 ZC3H11AO75152 810 aaKnown RBP eCLIP9.19□□□□□ -0.94
LIG4-204ENST00000611712 PROSCO94903 275 aa9.19□□□□□ -0.94
LIG4-204ENST00000611712 HOXD13P35453 343 aa9.19□□□□□ -0.94
LIG4-204ENST00000611712 MYO1EQ12965 1108 aa9.19□□□□□ -0.94
LIG4-204ENST00000611712 PCGF5Q86SE9 256 aa9.19□□□□□ -0.94
LIG4-204ENST00000611712 PAF1Q8N7H5 531 aa9.19□□□□□ -0.94
LIG4-204ENST00000611712 TTC17Q96AE7 1141 aa9.19□□□□□ -0.94
LIG4-204ENST00000611712 CHST7Q9NS84 486 aa9.19□□□□□ -0.94
LIG4-204ENST00000611712 MAP3K20Q9NYL2 800 aaKnown RBP9.19□□□□□ -0.94
LIG4-204ENST00000611712 FAM47DPA6NHR8 397 aa9.18□□□□□ -0.94
LIG4-204ENST00000611712 A6NJR5 290 aa9.18□□□□□ -0.94
LIG4-204ENST00000611712 WNT10BO00744 389 aa9.18□□□□□ -0.94
LIG4-204ENST00000611712 DCTN3O75935 186 aa9.18□□□□□ -0.94
LIG4-204ENST00000611712 TTC4O95801 387 aa9.18□□□□□ -0.94
LIG4-204ENST00000611712 BRD2P25440 801 aaKnown RBP9.18□□□□□ -0.94
LIG4-204ENST00000611712 EFNA5P52803 228 aa9.18□□□□□ -0.94
LIG4-204ENST00000611712 SARNPP82979 210 aaKnown RBP9.18□□□□□ -0.94
LIG4-204ENST00000611712 MKRN3Q13064 507 aaKnown RBP9.18□□□□□ -0.94
LIG4-204ENST00000611712 PPP6R3Q5H9R7 873 aaPredicted RBP9.18□□□□□ -0.94
LIG4-204ENST00000611712 GPAT2Q6NUI2 795 aa9.18□□□□□ -0.94
LIG4-204ENST00000611712 MAP4K3Q8IVH8 894 aa9.18□□□□□ -0.94
LIG4-204ENST00000611712 C1orf131Q8NDD1 294 aaKnown RBP9.18□□□□□ -0.94
LIG4-204ENST00000611712 CNKSR2Q8WXI2 1034 aa9.18□□□□□ -0.94
LIG4-204ENST00000611712 SHC3Q92529 594 aa9.18□□□□□ -0.94
LIG4-204ENST00000611712 FAF2Q96CS3 445 aa9.18□□□□□ -0.94
LIG4-204ENST00000611712 FAM84AQ96KN4 292 aa9.18□□□□□ -0.94
LIG4-204ENST00000611712 TPX2Q9ULW0 747 aaKnown RBP9.18□□□□□ -0.94
LIG4-204ENST00000611712 COG5Q9UP83 839 aa9.18□□□□□ -0.94
LIG4-204ENST00000611712 HEY1Q9Y5J3 304 aa9.18□□□□□ -0.94
LIG4-204ENST00000611712 UBR2Q8IWV8 1755 aa9.18□□□□□ -0.94
LIG4-204ENST00000611712 SYNJ2BP-COX16A0A087WUM0 186 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms