RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 STX10O60499 249 aa10.88□□□□□ -0.67
UPF1-213ENST00000601981 TMEM191BP0C7N4 346 aa10.88□□□□□ -0.67
UPF1-213ENST00000601981 EPB41P11171 864 aaKnown RBP10.88□□□□□ -0.67
UPF1-213ENST00000601981 KRT13P13646 458 aa10.88□□□□□ -0.67
UPF1-213ENST00000601981 CYP3A5P20815 502 aa10.88□□□□□ -0.67
UPF1-213ENST00000601981 FECHP22830 423 aa10.88□□□□□ -0.67
UPF1-213ENST00000601981 PSMC2P35998 433 aaKnown RBP10.88□□□□□ -0.67
UPF1-213ENST00000601981 OR1G1P47890 313 aa10.88□□□□□ -0.67
UPF1-213ENST00000601981 BCAR1P56945 870 aa10.88□□□□□ -0.67
UPF1-213ENST00000601981 DSC1Q08554 894 aa10.88□□□□□ -0.67
UPF1-213ENST00000601981 EPC2Q52LR7 807 aa10.88□□□□□ -0.67
UPF1-213ENST00000601981 GLRA4Q5JXX5 417 aa10.88□□□□□ -0.67
UPF1-213ENST00000601981 ZBTB41Q5SVQ8 909 aa10.88□□□□□ -0.67
UPF1-213ENST00000601981 KCNT2Q6UVM3 1135 aa10.88□□□□□ -0.67
UPF1-213ENST00000601981 INTS8Q75QN2 995 aaKnown RBP10.88□□□□□ -0.67
UPF1-213ENST00000601981 TMEM139Q8IV31 216 aa10.88□□□□□ -0.67
UPF1-213ENST00000601981 RDH13Q8NBN7 331 aa10.88□□□□□ -0.67
UPF1-213ENST00000601981 ARNTL2Q8WYA1 636 aa10.88□□□□□ -0.67
UPF1-213ENST00000601981 EEF2KMTQ96G04 330 aa10.88□□□□□ -0.67
UPF1-213ENST00000601981 ANKRD36BP1Q96IX9 119 aa10.88□□□□□ -0.67
UPF1-213ENST00000601981 FBXL18Q96ME1 805 aa10.88□□□□□ -0.67
UPF1-213ENST00000601981 PPP1R10Q96QC0 940 aaKnown RBP10.88□□□□□ -0.67
UPF1-213ENST00000601981 MKNK1Q9BUB5 465 aa10.88□□□□□ -0.67
UPF1-213ENST00000601981 COLEC11Q9BWP8 271 aa10.88□□□□□ -0.67
UPF1-213ENST00000601981 NAA15Q9BXJ9 866 aaKnown RBP10.88□□□□□ -0.67
UPF1-213ENST00000601981 CWH43Q9H720 699 aa10.88□□□□□ -0.67
UPF1-213ENST00000601981 NRDE2Q9H7Z3 1164 aa10.88□□□□□ -0.67
UPF1-213ENST00000601981 METTL14Q9HCE5 456 aaKnown RBP10.88□□□□□ -0.67
UPF1-213ENST00000601981 SPG21Q9NZD8 308 aa10.88□□□□□ -0.67
UPF1-213ENST00000601981 PUF60Q9UHX1 559 aaKnown RBP10.88□□□□□ -0.67
UPF1-213ENST00000601981 MTUS1Q9ULD2 1270 aa10.88□□□□□ -0.67
UPF1-213ENST00000601981 COL4A4P53420 1690 aaPredicted RBP10.88□□□□□ -0.67
UPF1-213ENST00000601981 A0A1W2PQJ5 194 aa10.87□□□□□ -0.67
UPF1-213ENST00000601981 CCP110O43303 1012 aa10.87□□□□□ -0.67
UPF1-213ENST00000601981 TNNC2P02585 160 aa10.87□□□□□ -0.67
UPF1-213ENST00000601981 ADRB2P07550 413 aa10.87□□□□□ -0.67
UPF1-213ENST00000601981 CASP14P31944 242 aa10.87□□□□□ -0.67
UPF1-213ENST00000601981 RPL9P32969 192 aaKnown RBP10.87□□□□□ -0.67
UPF1-213ENST00000601981 AP3M2P53677 418 aa10.87□□□□□ -0.67
UPF1-213ENST00000601981 ADKP55263 362 aaKnown RBP10.87□□□□□ -0.67
UPF1-213ENST00000601981 UBE3AQ05086 875 aa10.87□□□□□ -0.67
UPF1-213ENST00000601981 CYP24A1Q07973 514 aa10.87□□□□□ -0.67
UPF1-213ENST00000601981 GOLGA8FQ08AF8 430 aa10.87□□□□□ -0.67
UPF1-213ENST00000601981 GOLGA8DPQ0D2H9 430 aa10.87□□□□□ -0.67
UPF1-213ENST00000601981 SYCP1Q15431 976 aa10.87□□□□□ -0.67
UPF1-213ENST00000601981 PTPROQ16827 1216 aa10.87□□□□□ -0.67
UPF1-213ENST00000601981 JADE1Q6IE81 842 aa10.87□□□□□ -0.67
UPF1-213ENST00000601981 CRELD2Q6UXH1 353 aaPredicted RBP10.87□□□□□ -0.67
UPF1-213ENST00000601981 ZNF280BQ86YH2 543 aa10.87□□□□□ -0.67
UPF1-213ENST00000601981 CBWD2Q8IUF1 395 aa10.87□□□□□ -0.67
UPF1-213ENST00000601981 WDR49Q8IV35 697 aa10.87□□□□□ -0.67
UPF1-213ENST00000601981 COLGALT2Q8IYK4 626 aa10.87□□□□□ -0.67
UPF1-213ENST00000601981 FAM186BQ8IYM0 893 aa10.87□□□□□ -0.67
UPF1-213ENST00000601981 C17orf53Q8N3J3 647 aaPredicted RBP10.87□□□□□ -0.67
UPF1-213ENST00000601981 DEFB123Q8N688 67 aa10.87□□□□□ -0.67
UPF1-213ENST00000601981 GSTCDQ8NEC7 633 aa10.87□□□□□ -0.67
UPF1-213ENST00000601981 BAG1Q99933 345 aaPredicted RBP10.87□□□□□ -0.67
UPF1-213ENST00000601981 C17orf80Q9BSJ5 609 aa10.87□□□□□ -0.67
UPF1-213ENST00000601981 TTYH3Q9C0H2 523 aa10.87□□□□□ -0.67
UPF1-213ENST00000601981 DMAC2Q9NW81 257 aa10.87□□□□□ -0.67
UPF1-213ENST00000601981 MIOSQ9NXC5 875 aa10.87□□□□□ -0.67
UPF1-213ENST00000601981 ARMCX3Q9UH62 379 aaPredicted RBP10.87□□□□□ -0.67
UPF1-213ENST00000601981 CASTOR2A6NHX0 329 aa10.86□□□□□ -0.67
UPF1-213ENST00000601981 NRP1O14786 923 aa10.86□□□□□ -0.67
UPF1-213ENST00000601981 TRAPPC3O43617 180 aa10.86□□□□□ -0.67
UPF1-213ENST00000601981 FGF18O76093 207 aa10.86□□□□□ -0.67
UPF1-213ENST00000601981 DDHD2O94830 711 aa10.86□□□□□ -0.67
UPF1-213ENST00000601981 GALTP07902 379 aa10.86□□□□□ -0.67
UPF1-213ENST00000601981 DLATP10515 647 aaKnown RBP10.86□□□□□ -0.67
UPF1-213ENST00000601981 TNNI1P19237 187 aa10.86□□□□□ -0.67
UPF1-213ENST00000601981 PAX3P23760 479 aa10.86□□□□□ -0.67
UPF1-213ENST00000601981 SLC11A1P49279 550 aa10.86□□□□□ -0.67
UPF1-213ENST00000601981 AFF1P51825 1210 aaKnown RBP10.86□□□□□ -0.67
UPF1-213ENST00000601981 TFAMQ00059 246 aaKnown RBP10.86□□□□□ -0.67
UPF1-213ENST00000601981 ENPEPQ07075 957 aa10.86□□□□□ -0.67
UPF1-213ENST00000601981 ELAVL2Q12926 359 aaKnown RBP10.86□□□□□ -0.67
UPF1-213ENST00000601981 GPM6BQ13491 265 aa10.86□□□□□ -0.67
UPF1-213ENST00000601981 PSMD6Q15008 389 aa10.86□□□□□ -0.67
UPF1-213ENST00000601981 DUOXA2Q1HG44 320 aa10.86□□□□□ -0.67
UPF1-213ENST00000601981 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.86□□□□□ -0.67
UPF1-213ENST00000601981 SLC39A11Q8N1S5 342 aa10.86□□□□□ -0.67
UPF1-213ENST00000601981 GAS2L1Q99501 681 aaPredicted RBP10.86□□□□□ -0.67
UPF1-213ENST00000601981 CGRRF1Q99675 332 aa10.86□□□□□ -0.67
UPF1-213ENST00000601981 LMAN2LQ9H0V9 348 aa10.86□□□□□ -0.67
UPF1-213ENST00000601981 CERS4Q9HA82 394 aa10.86□□□□□ -0.67
UPF1-213ENST00000601981 PDE11AQ9HCR9 933 aa10.86□□□□□ -0.67
UPF1-213ENST00000601981 ABHD10Q9NUJ1 306 aa10.86□□□□□ -0.67
UPF1-213ENST00000601981 DNAJB4Q9UDY4 337 aa10.86□□□□□ -0.67
UPF1-213ENST00000601981 CAPN11Q9UMQ6 739 aa10.86□□□□□ -0.67
UPF1-213ENST00000601981 PLAGL2Q9UPG8 496 aa10.86□□□□□ -0.67
UPF1-213ENST00000601981 LZTS1Q9Y250 596 aa10.86□□□□□ -0.67
UPF1-213ENST00000601981 SIK3Q9Y2K2 1263 aa10.86□□□□□ -0.67
UPF1-213ENST00000601981 PRG3Q9Y2Y8 225 aaPredicted RBP10.86□□□□□ -0.67
UPF1-213ENST00000601981 NUB1Q9Y5A7 615 aa10.86□□□□□ -0.67
UPF1-213ENST00000601981 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.86□□□□□ -0.67
UPF1-213ENST00000601981 SCN1AP35498 2009 aa10.85□□□□□ -0.67
UPF1-213ENST00000601981 SF3B1O75533 1304 aaKnown RBP eCLIP10.85□□□□□ -0.671e-6■■■■■ 66.8
UPF1-213ENST00000601981 ARHGEF37A1IGU5 675 aa10.85□□□□□ -0.67
UPF1-213ENST00000601981 H3BNC9 293 aa10.85□□□□□ -0.67
UPF1-213ENST00000601981 TMEM189-UBE2V1I3L0A0 370 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms