RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 NTPCRQ9BSD7 190 aaKnown RBP13.69□□□□□ -0.22
TRIM28-212ENST00000597995 IER2Q9BTL4 223 aa13.69□□□□□ -0.22
TRIM28-212ENST00000597995 TRMT61BQ9BVS5 477 aaKnown RBP13.69□□□□□ -0.22
TRIM28-212ENST00000597995 TARS2Q9BW92 718 aaKnown RBP13.69□□□□□ -0.22
TRIM28-212ENST00000597995 EPC1Q9H2F5 836 aa13.69□□□□□ -0.22
TRIM28-212ENST00000597995 CYP4F11Q9HBI6 524 aa13.69□□□□□ -0.22
TRIM28-212ENST00000597995 PRMT8Q9NR22 394 aaPredicted RBP13.69□□□□□ -0.22
TRIM28-212ENST00000597995 HEBP1Q9NRV9 189 aa13.69□□□□□ -0.22
TRIM28-212ENST00000597995 CNTN3Q9P232 1028 aa13.69□□□□□ -0.22
TRIM28-212ENST00000597995 KCNG1Q9UIX4 513 aa13.69□□□□□ -0.22
TRIM28-212ENST00000597995 FBXL5Q9UKA1 691 aa13.69□□□□□ -0.22
TRIM28-212ENST00000597995 DNM3Q9UQ16 869 aa13.69□□□□□ -0.22
TRIM28-212ENST00000597995 NUB1Q9Y5A7 615 aa13.69□□□□□ -0.22
TRIM28-212ENST00000597995 INSL5Q9Y5Q6 135 aa13.69□□□□□ -0.22
TRIM28-212ENST00000597995 COL4A3Q01955 1670 aa13.69□□□□□ -0.22
TRIM28-212ENST00000597995 PP2D1A8MPX8 630 aa13.68□□□□□ -0.22
TRIM28-212ENST00000597995 ABLIM1O14639 778 aa13.68□□□□□ -0.22
TRIM28-212ENST00000597995 SEC24AO95486 1093 aa13.68□□□□□ -0.22
TRIM28-212ENST00000597995 CDC25AP30304 524 aa13.68□□□□□ -0.22
TRIM28-212ENST00000597995 MCM2P49736 904 aa13.68□□□□□ -0.22
TRIM28-212ENST00000597995 OSTNP61366 133 aa13.68□□□□□ -0.22
TRIM28-212ENST00000597995 RSPO4Q2I0M5 234 aaPredicted RBP13.68□□□□□ -0.22
TRIM28-212ENST00000597995 FAM78AQ5JUQ0 283 aa13.68□□□□□ -0.22
TRIM28-212ENST00000597995 CYP4A22Q5TCH4 519 aa13.68□□□□□ -0.22
TRIM28-212ENST00000597995 MCTP1Q6DN14 999 aa13.68□□□□□ -0.22
TRIM28-212ENST00000597995 IQCEQ6IPM2 695 aa13.68□□□□□ -0.22
TRIM28-212ENST00000597995 MPZL3Q6UWV2 235 aa13.68□□□□□ -0.22
TRIM28-212ENST00000597995 PDZD4Q76G19 769 aaPredicted RBP13.68□□□□□ -0.22
TRIM28-212ENST00000597995 TAS1R3Q7RTX0 852 aa13.68□□□□□ -0.22
TRIM28-212ENST00000597995 ZNF687Q8N1G0 1237 aa13.68□□□□□ -0.22
TRIM28-212ENST00000597995 ELMOD1Q8N336 334 aa13.68□□□□□ -0.22
TRIM28-212ENST00000597995 LEMD2Q8NC56 503 aa13.68□□□□□ -0.22
TRIM28-212ENST00000597995 APPL2Q8NEU8 664 aa13.68□□□□□ -0.22
TRIM28-212ENST00000597995 SNX29Q8TEQ0 813 aa13.68□□□□□ -0.22
TRIM28-212ENST00000597995 IRF7Q92985 503 aa13.68□□□□□ -0.22
TRIM28-212ENST00000597995 ZNF512Q96ME7 567 aaPredicted RBP13.68□□□□□ -0.22
TRIM28-212ENST00000597995 ASB16Q96NS5 453 aa13.68□□□□□ -0.22
TRIM28-212ENST00000597995 TCHPQ9BT92 498 aa13.68□□□□□ -0.22
TRIM28-212ENST00000597995 MMTAG2Q9BU76 263 aaKnown RBP13.68□□□□□ -0.22
TRIM28-212ENST00000597995 TIPINQ9BVW5 301 aa13.68□□□□□ -0.22
TRIM28-212ENST00000597995 BACH2Q9BYV9 841 aa13.68□□□□□ -0.22
TRIM28-212ENST00000597995 BRD9Q9H8M2 597 aa13.68□□□□□ -0.22
TRIM28-212ENST00000597995 KMT5AQ9NQR1 393 aa13.68□□□□□ -0.22
TRIM28-212ENST00000597995 AFF4Q9UHB7 1163 aaKnown RBP13.68□□□□□ -0.22
TRIM28-212ENST00000597995 HIP1RO75146 1068 aa13.67□□□□□ -0.22
TRIM28-212ENST00000597995 NRLP54845 237 aa13.67□□□□□ -0.22
TRIM28-212ENST00000597995 ARPP19P56211 112 aa13.67□□□□□ -0.22
TRIM28-212ENST00000597995 MAPK7Q13164 816 aa13.67□□□□□ -0.22
TRIM28-212ENST00000597995 CUL4AQ13619 759 aa13.67□□□□□ -0.22
TRIM28-212ENST00000597995 CTXN3Q4LDR2 81 aa13.67□□□□□ -0.22
TRIM28-212ENST00000597995 KRT79Q5XKE5 535 aa13.67□□□□□ -0.22
TRIM28-212ENST00000597995 ZNF280DQ6N043 979 aa13.67□□□□□ -0.22
TRIM28-212ENST00000597995 RINT1Q6NUQ1 792 aa13.67□□□□□ -0.22
TRIM28-212ENST00000597995 C1orf186Q6ZWK4 172 aa13.67□□□□□ -0.22
TRIM28-212ENST00000597995 MAP4K3Q8IVH8 894 aa13.67□□□□□ -0.22
TRIM28-212ENST00000597995 DEPDC1BQ8WUY9 529 aa13.67□□□□□ -0.22
TRIM28-212ENST00000597995 SMARCD2Q92925 531 aa13.67□□□□□ -0.22
TRIM28-212ENST00000597995 TCEAL4Q96EI5 215 aa13.67□□□□□ -0.22
TRIM28-212ENST00000597995 CHRDQ9H2X0 955 aa13.67□□□□□ -0.22
TRIM28-212ENST00000597995 SMG5Q9UPR3 1016 aaKnown RBP13.67□□□□□ -0.22
TRIM28-212ENST00000597995 KIF3AQ9Y496 699 aa13.67□□□□□ -0.22
TRIM28-212ENST00000597995 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.67□□□□□ -0.22
TRIM28-212ENST00000597995 CITO14578 2027 aa13.67□□□□□ -0.22
TRIM28-212ENST00000597995 DNAH14Q0VDD8 3507 aa13.67□□□□□ -0.22
TRIM28-212ENST00000597995 PRR5-ARHGAP8B1AHC4 643 aa13.66□□□□□ -0.22
TRIM28-212ENST00000597995 E9PMD0 336 aa13.66□□□□□ -0.22
TRIM28-212ENST00000597995 LAD1O00515 517 aa13.66□□□□□ -0.22
TRIM28-212ENST00000597995 TOM1L1O75674 476 aa13.66□□□□□ -0.22
TRIM28-212ENST00000597995 PSMC3P17980 439 aa13.66□□□□□ -0.22
TRIM28-212ENST00000597995 GUCY2CP25092 1073 aa13.66□□□□□ -0.22
TRIM28-212ENST00000597995 PRPHP41219 470 aa13.66□□□□□ -0.22
TRIM28-212ENST00000597995 CCR2P41597 374 aa13.66□□□□□ -0.22
TRIM28-212ENST00000597995 EPHA5P54756 1037 aa13.66□□□□□ -0.22
TRIM28-212ENST00000597995 MLLT6P55198 1093 aaPredicted RBP13.66□□□□□ -0.22
TRIM28-212ENST00000597995 ARHGAP8P85298 464 aa13.66□□□□□ -0.22
TRIM28-212ENST00000597995 ATP2C1P98194 919 aaPredicted RBP13.66□□□□□ -0.22
TRIM28-212ENST00000597995 MTAPQ13126 283 aa13.66□□□□□ -0.22
TRIM28-212ENST00000597995 GRM2Q14416 872 aa13.66□□□□□ -0.22
TRIM28-212ENST00000597995 PPP2R5DQ14738 602 aa13.66□□□□□ -0.22
TRIM28-212ENST00000597995 SLC10A6Q3KNW5 377 aa13.66□□□□□ -0.22
TRIM28-212ENST00000597995 RILPL1Q5EBL4 403 aa13.66□□□□□ -0.22
TRIM28-212ENST00000597995 TSSK4Q6SA08 328 aa13.66□□□□□ -0.22
TRIM28-212ENST00000597995 KCNK18Q7Z418 384 aa13.66□□□□□ -0.22
TRIM28-212ENST00000597995 KCTD17Q8N5Z5 321 aa13.66□□□□□ -0.22
TRIM28-212ENST00000597995 SPIRE2Q8WWL2 714 aa13.66□□□□□ -0.22
TRIM28-212ENST00000597995 DDX12PQ92771 950 aa13.66□□□□□ -0.22
TRIM28-212ENST00000597995 C18orf25Q96B23 403 aaPredicted RBP13.66□□□□□ -0.22
TRIM28-212ENST00000597995 OXCT2Q9BYC2 517 aaPredicted RBP13.66□□□□□ -0.22
TRIM28-212ENST00000597995 GPR88Q9GZN0 384 aa13.66□□□□□ -0.22
TRIM28-212ENST00000597995 TRPV4Q9HBA0 871 aa13.66□□□□□ -0.22
TRIM28-212ENST00000597995 ZNF334Q9HCZ1 680 aaPredicted RBP13.66□□□□□ -0.22
TRIM28-212ENST00000597995 PCDHB8Q9UN66 801 aa13.66□□□□□ -0.22
TRIM28-212ENST00000597995 SMC3Q9UQE7 1217 aa13.66□□□□□ -0.22
TRIM28-212ENST00000597995 MEFVO15553 781 aaPredicted RBP13.65□□□□□ -0.22
TRIM28-212ENST00000597995 MOSPD3O75425 235 aa13.65□□□□□ -0.22
TRIM28-212ENST00000597995 MARCKSP29966 332 aaPredicted RBP13.65□□□□□ -0.22
TRIM28-212ENST00000597995 GDI1P31150 447 aa13.65□□□□□ -0.22
TRIM28-212ENST00000597995 MCM4P33991 863 aa13.65□□□□□ -0.22
TRIM28-212ENST00000597995 LMNB2Q03252 620 aa13.65□□□□□ -0.22
TRIM28-212ENST00000597995 TWF1Q12792 350 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms