RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 ADRB2P07550 413 aa14.84□□□□□ -0.03
TRIM28-211ENST00000597968 GJB2P29033 226 aa14.84□□□□□ -0.03
TRIM28-211ENST00000597968 MARCKSP29966 332 aaPredicted RBP14.84□□□□□ -0.03
TRIM28-211ENST00000597968 MCM4P33991 863 aa14.84□□□□□ -0.03
TRIM28-211ENST00000597968 LONP1P36776 959 aaKnown RBP14.84□□□□□ -0.03
TRIM28-211ENST00000597968 UBA7P41226 1012 aa14.84□□□□□ -0.03
TRIM28-211ENST00000597968 AARSP49588 968 aaKnown RBP eCLIP14.84□□□□□ -0.03
TRIM28-211ENST00000597968 ZNF131P52739 623 aa14.84□□□□□ -0.03
TRIM28-211ENST00000597968 PLD1Q13393 1074 aa14.84□□□□□ -0.03
TRIM28-211ENST00000597968 ZBTB6Q15916 424 aa14.84□□□□□ -0.03
TRIM28-211ENST00000597968 CTXN3Q4LDR2 81 aa14.84□□□□□ -0.03
TRIM28-211ENST00000597968 CYP4A22Q5TCH4 519 aa14.84□□□□□ -0.03
TRIM28-211ENST00000597968 BEST2Q8NFU1 509 aa14.84□□□□□ -0.03
TRIM28-211ENST00000597968 DDX12PQ92771 950 aa14.84□□□□□ -0.03
TRIM28-211ENST00000597968 RPP25Q9BUL9 199 aaKnown RBP14.84□□□□□ -0.03
TRIM28-211ENST00000597968 CYP4F11Q9HBI6 524 aa14.84□□□□□ -0.03
TRIM28-211ENST00000597968 ANKFY1Q9P2R3 1169 aa14.84□□□□□ -0.03
TRIM28-211ENST00000597968 HSFX1Q9UBD0 423 aa14.84□□□□□ -0.03
TRIM28-211ENST00000597968 MRPS17Q9Y2R5 130 aaKnown RBP14.84□□□□□ -0.03
TRIM28-211ENST00000597968 INSL5Q9Y5Q6 135 aa14.84□□□□□ -0.03
TRIM28-211ENST00000597968 I3L4J1 428 aa14.83□□□□□ -0.04
TRIM28-211ENST00000597968 RPS9P46781 194 aaKnown RBP14.83□□□□□ -0.04
TRIM28-211ENST00000597968 EPHA5P54756 1037 aa14.83□□□□□ -0.04
TRIM28-211ENST00000597968 MLLT6P55198 1093 aaPredicted RBP14.83□□□□□ -0.04
TRIM28-211ENST00000597968 YWHAHQ04917 246 aaPredicted RBP14.83□□□□□ -0.04
TRIM28-211ENST00000597968 PPP2R3AQ06190 1150 aa14.83□□□□□ -0.04
TRIM28-211ENST00000597968 PRSS36Q5K4E3 855 aa14.83□□□□□ -0.04
TRIM28-211ENST00000597968 PDZD4Q76G19 769 aaPredicted RBP14.83□□□□□ -0.04
TRIM28-211ENST00000597968 HAUS6Q7Z4H7 955 aa14.83□□□□□ -0.04
TRIM28-211ENST00000597968 E2F7Q96AV8 911 aa14.83□□□□□ -0.04
TRIM28-211ENST00000597968 ZBTB45Q96K62 511 aaPredicted RBP14.83□□□□□ -0.04
TRIM28-211ENST00000597968 ZNF512Q96ME7 567 aaPredicted RBP14.83□□□□□ -0.04
TRIM28-211ENST00000597968 TBC1D32Q96NH3 1257 aa14.83□□□□□ -0.04
TRIM28-211ENST00000597968 IER2Q9BTL4 223 aa14.83□□□□□ -0.04
TRIM28-211ENST00000597968 PARVGQ9HBI0 331 aa14.83□□□□□ -0.04
TRIM28-211ENST00000597968 HCFC1R1Q9NWW0 138 aa14.83□□□□□ -0.04
TRIM28-211ENST00000597968 SMC3Q9UQE7 1217 aa14.83□□□□□ -0.04
TRIM28-211ENST00000597968 OR6C75A6NL08 312 aa14.82□□□□□ -0.04
TRIM28-211ENST00000597968 HNRNPDLO14979 420 aaKnown RBP14.82□□□□□ -0.04
TRIM28-211ENST00000597968 OGTO15294 1046 aa14.82□□□□□ -0.04
TRIM28-211ENST00000597968 DCNP07585 359 aaKnown RBP14.82□□□□□ -0.04
TRIM28-211ENST00000597968 TYMPP19971 482 aa14.82□□□□□ -0.04
TRIM28-211ENST00000597968 IGFBP6P24592 240 aaPredicted RBP14.82□□□□□ -0.04
TRIM28-211ENST00000597968 LIG4P49917 911 aa14.82□□□□□ -0.04
TRIM28-211ENST00000597968 SNW1Q13573 536 aaKnown RBP14.82□□□□□ -0.04
TRIM28-211ENST00000597968 ZRSR1Q15695 479 aaKnown RBP14.82□□□□□ -0.04
TRIM28-211ENST00000597968 ARSHQ5FYA8 562 aa14.82□□□□□ -0.04
TRIM28-211ENST00000597968 ZBTB41Q5SVQ8 909 aa14.82□□□□□ -0.04
TRIM28-211ENST00000597968 LARP1BQ659C4 914 aaKnown RBP14.82□□□□□ -0.04
TRIM28-211ENST00000597968 C1orf228Q6PIY5 440 aa14.82□□□□□ -0.04
TRIM28-211ENST00000597968 MAMSTRQ6ZN01 415 aa14.82□□□□□ -0.04
TRIM28-211ENST00000597968 ERMP1Q7Z2K6 904 aa14.82□□□□□ -0.04
TRIM28-211ENST00000597968 ADSSL1Q8N142 457 aa14.82□□□□□ -0.04
TRIM28-211ENST00000597968 DEPDC1BQ8WUY9 529 aa14.82□□□□□ -0.04
TRIM28-211ENST00000597968 C18orf25Q96B23 403 aaPredicted RBP14.82□□□□□ -0.04
TRIM28-211ENST00000597968 BICD1Q96G01 975 aa14.82□□□□□ -0.04
TRIM28-211ENST00000597968 ST6GALNAC4Q9H4F1 302 aa14.82□□□□□ -0.04
TRIM28-211ENST00000597968 TRPV4Q9HBA0 871 aa14.82□□□□□ -0.04
TRIM28-211ENST00000597968 ZFP14Q9HCL3 533 aa14.82□□□□□ -0.04
TRIM28-211ENST00000597968 TBX20Q9UMR3 447 aa14.82□□□□□ -0.04
TRIM28-211ENST00000597968 DERAQ9Y315 318 aa14.82□□□□□ -0.04
TRIM28-211ENST00000597968 MAN2B1O00754 1011 aa14.81□□□□□ -0.04
TRIM28-211ENST00000597968 SPTLC1O15269 473 aa14.81□□□□□ -0.04
TRIM28-211ENST00000597968 MEFVO15553 781 aaPredicted RBP14.81□□□□□ -0.04
TRIM28-211ENST00000597968 TRAK2O60296 914 aa14.81□□□□□ -0.04
TRIM28-211ENST00000597968 SP9P0CG40 484 aa14.81□□□□□ -0.04
TRIM28-211ENST00000597968 HARSP12081 509 aaKnown RBP14.81□□□□□ -0.04
TRIM28-211ENST00000597968 GLULP15104 373 aa14.81□□□□□ -0.04
TRIM28-211ENST00000597968 MATR3P43243 847 aaKnown RBP eCLIP14.81□□□□□ -0.04
TRIM28-211ENST00000597968 GTF2BQ00403 316 aa14.81□□□□□ -0.04
TRIM28-211ENST00000597968 RAD51AP2Q09MP3 1159 aa14.81□□□□□ -0.04
TRIM28-211ENST00000597968 MYBPC2Q14324 1141 aa14.81□□□□□ -0.04
TRIM28-211ENST00000597968 SLC5A9Q2M3M2 681 aa14.81□□□□□ -0.04
TRIM28-211ENST00000597968 ZNF852Q6ZMS4 543 aa14.81□□□□□ -0.04
TRIM28-211ENST00000597968 USP37Q86T82 979 aa14.81□□□□□ -0.04
TRIM28-211ENST00000597968 IRF7Q92985 503 aa14.81□□□□□ -0.04
TRIM28-211ENST00000597968 CLDN23Q96B33 292 aa14.81□□□□□ -0.04
TRIM28-211ENST00000597968 KIF12Q96FN5 646 aa14.81□□□□□ -0.04
TRIM28-211ENST00000597968 MSANTD3Q96H12 275 aa14.81□□□□□ -0.04
TRIM28-211ENST00000597968 ASB16Q96NS5 453 aa14.81□□□□□ -0.04
TRIM28-211ENST00000597968 CORO1BQ9BR76 489 aa14.81□□□□□ -0.04
TRIM28-211ENST00000597968 REEP2Q9BRK0 252 aa14.81□□□□□ -0.04
TRIM28-211ENST00000597968 FAM126AQ9BYI3 521 aaPredicted RBP14.81□□□□□ -0.04
TRIM28-211ENST00000597968 ASB7Q9H672 318 aa14.81□□□□□ -0.04
TRIM28-211ENST00000597968 RPF1Q9H9Y2 349 aaKnown RBP14.81□□□□□ -0.04
TRIM28-211ENST00000597968 LTB4R2Q9NPC1 389 aa14.81□□□□□ -0.04
TRIM28-211ENST00000597968 ASB3Q9Y575 518 aa14.81□□□□□ -0.04
TRIM28-211ENST00000597968 CITO14578 2027 aa14.8□□□□□ -0.04
TRIM28-211ENST00000597968 A0A0B4J269 797 aa14.8□□□□□ -0.04
TRIM28-211ENST00000597968 LAMTOR5O43504 91 aa14.8□□□□□ -0.04
TRIM28-211ENST00000597968 FAM189A1O60320 539 aa14.8□□□□□ -0.04
TRIM28-211ENST00000597968 FAM13AO94988 1023 aa14.8□□□□□ -0.04
TRIM28-211ENST00000597968 FGF19O95750 216 aa14.8□□□□□ -0.04
TRIM28-211ENST00000597968 CXCL8P10145 99 aa14.8□□□□□ -0.04
TRIM28-211ENST00000597968 CPB1P15086 417 aa14.8□□□□□ -0.04
TRIM28-211ENST00000597968 PDCP20941 246 aa14.8□□□□□ -0.04
TRIM28-211ENST00000597968 ADCY1Q08828 1119 aa14.8□□□□□ -0.04
TRIM28-211ENST00000597968 GPR17Q13304 367 aa14.8□□□□□ -0.04
TRIM28-211ENST00000597968 SPECC1Q5M775 1068 aa14.8□□□□□ -0.04
TRIM28-211ENST00000597968 SPATA1Q5VX52 437 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms