RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 APOBEC3GQ9HC16 384 aaKnown RBP15.77■□□□□ 0.11
VRK3-212ENST00000596814 MYO6Q9UM54 1294 aa15.77■□□□□ 0.11
VRK3-212ENST00000596814 AGAP1Q9UPQ3 857 aa15.77■□□□□ 0.11
VRK3-212ENST00000596814 INPP5FQ9Y2H2 1132 aa15.77■□□□□ 0.11
VRK3-212ENST00000596814 LOC101059915A0A1B0GWI6 518 aaPredicted RBP15.76■□□□□ 0.11
VRK3-212ENST00000596814 INPPL1O15357 1258 aa15.76■□□□□ 0.11
VRK3-212ENST00000596814 PFKMP08237 780 aa15.76■□□□□ 0.11
VRK3-212ENST00000596814 ATICP31939 592 aa15.76■□□□□ 0.11
VRK3-212ENST00000596814 AFF1P51825 1210 aaKnown RBP15.76■□□□□ 0.11
VRK3-212ENST00000596814 JAM2P57087 298 aa15.76■□□□□ 0.11
VRK3-212ENST00000596814 GCNT1Q02742 428 aa15.76■□□□□ 0.11
VRK3-212ENST00000596814 GRIK3Q13003 919 aa15.76■□□□□ 0.11
VRK3-212ENST00000596814 IKBKEQ14164 716 aa15.76■□□□□ 0.11
VRK3-212ENST00000596814 ARHGAP44Q17R89 818 aa15.76■□□□□ 0.11
VRK3-212ENST00000596814 ENOSF1Q7L5Y1 443 aa15.76■□□□□ 0.11
VRK3-212ENST00000596814 C7orf61Q8IZ16 206 aa15.76■□□□□ 0.11
VRK3-212ENST00000596814 RPUSD2Q8IZ73 545 aaKnown RBP15.76■□□□□ 0.11
VRK3-212ENST00000596814 CCDC112Q8NEF3 446 aa15.76■□□□□ 0.11
VRK3-212ENST00000596814 HTATIP2Q9BUP3 242 aa15.76■□□□□ 0.11
VRK3-212ENST00000596814 RNF216Q9NWF9 866 aaPredicted RBP15.76■□□□□ 0.11
VRK3-212ENST00000596814 LRFN2Q9ULH4 789 aa15.76■□□□□ 0.11
VRK3-212ENST00000596814 NUB1Q9Y5A7 615 aa15.76■□□□□ 0.11
VRK3-212ENST00000596814 PCDHB7Q9Y5E2 793 aa15.76■□□□□ 0.11
VRK3-212ENST00000596814 SCN1AP35498 2009 aa15.75■□□□□ 0.11
VRK3-212ENST00000596814 F8VZ95 297 aa15.75■□□□□ 0.11
VRK3-212ENST00000596814 NRDCO43847 1150 aa15.75■□□□□ 0.11
VRK3-212ENST00000596814 OFD1O75665 1012 aa15.75■□□□□ 0.11
VRK3-212ENST00000596814 MFAP3P55082 362 aa15.75■□□□□ 0.11
VRK3-212ENST00000596814 SOX4Q06945 474 aaPredicted RBP15.75■□□□□ 0.11
VRK3-212ENST00000596814 DRAP1Q14919 205 aaPredicted RBP15.75■□□□□ 0.11
VRK3-212ENST00000596814 HS1BP3Q53T59 392 aa15.75■□□□□ 0.11
VRK3-212ENST00000596814 CLLU1OSQ5K130 101 aa15.75■□□□□ 0.11
VRK3-212ENST00000596814 C9orf57Q5W0N0 161 aa15.75■□□□□ 0.11
VRK3-212ENST00000596814 LRRC52Q8N7C0 313 aa15.75■□□□□ 0.11
VRK3-212ENST00000596814 KAT5Q92993 513 aa15.75■□□□□ 0.11
VRK3-212ENST00000596814 HPDLQ96IR7 371 aa15.75■□□□□ 0.11
VRK3-212ENST00000596814 KREMEN1Q96MU8 473 aa15.75■□□□□ 0.11
VRK3-212ENST00000596814 NIF3L1Q9GZT8 377 aa15.75■□□□□ 0.11
VRK3-212ENST00000596814 KCNF1Q9H3M0 494 aa15.75■□□□□ 0.11
VRK3-212ENST00000596814 VRTNQ9H8Y1 702 aa15.75■□□□□ 0.11
VRK3-212ENST00000596814 GOLGA2P5Q9HBQ8 144 aa15.75■□□□□ 0.11
VRK3-212ENST00000596814 ZNHIT6Q9NWK9 470 aaKnown RBP15.75■□□□□ 0.11
VRK3-212ENST00000596814 MIOSQ9NXC5 875 aa15.75■□□□□ 0.11
VRK3-212ENST00000596814 STAU1O95793 577 aaKnown RBP15.74■□□□□ 0.11
VRK3-212ENST00000596814 FGFR1P11362 822 aa15.74■□□□□ 0.11
VRK3-212ENST00000596814 TBXAS1P24557 533 aaPredicted RBP15.74■□□□□ 0.11
VRK3-212ENST00000596814 LRPAP1P30533 357 aa15.74■□□□□ 0.11
VRK3-212ENST00000596814 CUL2Q13617 745 aa15.74■□□□□ 0.11
VRK3-212ENST00000596814 NAB2Q15742 525 aa15.74■□□□□ 0.11
VRK3-212ENST00000596814 ZNF667Q5HYK9 610 aa15.74■□□□□ 0.11
VRK3-212ENST00000596814 SFMBT2Q5VUG0 894 aa15.74■□□□□ 0.11
VRK3-212ENST00000596814 NPAS4Q8IUM7 802 aa15.74■□□□□ 0.11
VRK3-212ENST00000596814 URGCPQ8TCY9 931 aa15.74■□□□□ 0.11
VRK3-212ENST00000596814 SYN2Q92777 582 aaPredicted RBP15.74■□□□□ 0.11
VRK3-212ENST00000596814 ZNF560Q96MR9 790 aa15.74■□□□□ 0.11
VRK3-212ENST00000596814 ZNF830Q96NB3 372 aaPredicted RBP15.74■□□□□ 0.11
VRK3-212ENST00000596814 BAG1Q99933 345 aaPredicted RBP15.74■□□□□ 0.11
VRK3-212ENST00000596814 GPR88Q9GZN0 384 aa15.74■□□□□ 0.11
VRK3-212ENST00000596814 ABHD14A-ACY1A0A1B0GW23 586 aa15.74■□□□□ 0.11
VRK3-212ENST00000596814 ANO9A1A5B4 782 aa15.74■□□□□ 0.11
VRK3-212ENST00000596814 PPEF2O14830 753 aa15.74■□□□□ 0.11
VRK3-212ENST00000596814 HOXA2O43364 376 aa15.74■□□□□ 0.11
VRK3-212ENST00000596814 POMCP01189 267 aa15.74■□□□□ 0.11
VRK3-212ENST00000596814 FECHP22830 423 aa15.74■□□□□ 0.11
VRK3-212ENST00000596814 HNRNPH3P31942 346 aaKnown RBP15.74■□□□□ 0.11
VRK3-212ENST00000596814 STAT1P42224 750 aa15.74■□□□□ 0.11
VRK3-212ENST00000596814 CCZ1BP86790 482 aa15.74■□□□□ 0.11
VRK3-212ENST00000596814 CCZ1P86791 482 aaPredicted RBP15.74■□□□□ 0.11
VRK3-212ENST00000596814 MYO1EQ12965 1108 aa15.74■□□□□ 0.11
VRK3-212ENST00000596814 PPIGQ13427 754 aaKnown RBP eCLIP15.74■□□□□ 0.112e-6■■■■□ 20.1
VRK3-212ENST00000596814 NOMO2Q5JPE7 1267 aa15.74■□□□□ 0.11
VRK3-212ENST00000596814 E4F1Q66K89 784 aaPredicted RBP15.74■□□□□ 0.11
VRK3-212ENST00000596814 FMNL3Q8IVF7 1028 aa15.74■□□□□ 0.11
VRK3-212ENST00000596814 ABI1Q8IZP0 508 aa15.74■□□□□ 0.11
VRK3-212ENST00000596814 ARID3AQ99856 593 aa15.74■□□□□ 0.11
VRK3-212ENST00000596814 IL23AQ9NPF7 189 aa15.74■□□□□ 0.11
VRK3-212ENST00000596814 PIRO00625 290 aa15.73■□□□□ 0.11
VRK3-212ENST00000596814 EFCAB14O75071 495 aa15.73■□□□□ 0.11
VRK3-212ENST00000596814 PNMA6AP0CW24 399 aaPredicted RBP15.73■□□□□ 0.11
VRK3-212ENST00000596814 P4HA1P13674 534 aa15.73■□□□□ 0.11
VRK3-212ENST00000596814 SOX5P35711 763 aa15.73■□□□□ 0.11
VRK3-212ENST00000596814 PNPLA4P41247 253 aa15.73■□□□□ 0.11
VRK3-212ENST00000596814 ASIC2Q16515 512 aa15.73■□□□□ 0.11
VRK3-212ENST00000596814 MEA1Q16626 185 aa15.73■□□□□ 0.11
VRK3-212ENST00000596814 WDR72Q3MJ13 1102 aa15.73■□□□□ 0.11
VRK3-212ENST00000596814 SCARA5Q6ZMJ2 495 aa15.73■□□□□ 0.11
VRK3-212ENST00000596814 GPIHBP1Q8IV16 184 aa15.73■□□□□ 0.11
VRK3-212ENST00000596814 TMEM139Q8IV31 216 aa15.73■□□□□ 0.11
VRK3-212ENST00000596814 SHC3Q92529 594 aa15.73■□□□□ 0.11
VRK3-212ENST00000596814 FAXDC2Q96IV6 333 aa15.73■□□□□ 0.11
VRK3-212ENST00000596814 AIPL1Q9NZN9 384 aa15.73■□□□□ 0.11
VRK3-212ENST00000596814 PCDH10Q9P2E7 1040 aa15.73■□□□□ 0.11
VRK3-212ENST00000596814 NXF1Q9UBU9 619 aaKnown RBP15.73■□□□□ 0.11
VRK3-212ENST00000596814 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.73■□□□□ 0.115e-6■■■■□ 19.3
VRK3-212ENST00000596814 CCDC85CA6NKD9 419 aa15.72■□□□□ 0.11
VRK3-212ENST00000596814 EVI5O60447 810 aa15.72■□□□□ 0.11
VRK3-212ENST00000596814 ACRP10323 421 aa15.72■□□□□ 0.11
VRK3-212ENST00000596814 ASPAP45381 313 aa15.72■□□□□ 0.11
VRK3-212ENST00000596814 TNNC1P63316 161 aa15.72■□□□□ 0.11
VRK3-212ENST00000596814 FPGSQ05932 587 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 107.3 ms