RNA–Protein interactions for RNA: ENST00000595242.3

SCAF1-202, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS ALT2 TSL 3

Gene SCAF1, Length 463 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-202ENST00000595242 USP49Q70CQ1 688 aa14.07□□□□□ -0.16
SCAF1-202ENST00000595242 FAM3CQ92520 227 aa14.07□□□□□ -0.16
SCAF1-202ENST00000595242 RABGGTAQ92696 567 aa14.07□□□□□ -0.16
SCAF1-202ENST00000595242 LENG9Q96B70 501 aa14.07□□□□□ -0.16
SCAF1-202ENST00000595242 MCRS1Q96EZ8 462 aa14.07□□□□□ -0.16
SCAF1-202ENST00000595242 CCDC34Q96HJ3 373 aa14.07□□□□□ -0.16
SCAF1-202ENST00000595242 CLSTN3Q9BQT9 956 aa14.07□□□□□ -0.16
SCAF1-202ENST00000595242 LSM14BQ9BX40 385 aaKnown RBP14.07□□□□□ -0.16
SCAF1-202ENST00000595242 RNF39Q9H2S5 420 aa14.07□□□□□ -0.16
SCAF1-202ENST00000595242 MINDY3Q9H8M7 445 aa14.07□□□□□ -0.16
SCAF1-202ENST00000595242 DNMT3BQ9UBC3 853 aaKnown RBP14.07□□□□□ -0.16
SCAF1-202ENST00000595242 SERTAD1Q9UHV2 236 aa14.07□□□□□ -0.16
SCAF1-202ENST00000595242 IPPQ9Y573 584 aa14.07□□□□□ -0.16
SCAF1-202ENST00000595242 TRIP11Q15643 1979 aa14.07□□□□□ -0.16
SCAF1-202ENST00000595242 KIF26AQ9ULI4 1882 aaPredicted RBP14.06□□□□□ -0.16
SCAF1-202ENST00000595242 A0A087X0B3 334 aa14.06□□□□□ -0.16
SCAF1-202ENST00000595242 POLR2DO15514 142 aaKnown RBP14.06□□□□□ -0.16
SCAF1-202ENST00000595242 SLFN14P0C7P3 912 aa14.06□□□□□ -0.16
SCAF1-202ENST00000595242 MCM7P33993 719 aa14.06□□□□□ -0.16
SCAF1-202ENST00000595242 ZNF75DP51815 510 aa14.06□□□□□ -0.16
SCAF1-202ENST00000595242 JAK3P52333 1124 aa14.06□□□□□ -0.16
SCAF1-202ENST00000595242 CCDC6Q16204 474 aa14.06□□□□□ -0.16
SCAF1-202ENST00000595242 IL17AQ16552 155 aa14.06□□□□□ -0.16
SCAF1-202ENST00000595242 HEATR6Q6AI08 1181 aaKnown RBP14.06□□□□□ -0.16
SCAF1-202ENST00000595242 PSAPL1Q6NUJ1 521 aa14.06□□□□□ -0.16
SCAF1-202ENST00000595242 CEP68Q76N32 757 aa14.06□□□□□ -0.16
SCAF1-202ENST00000595242 SRGAP1Q7Z6B7 1085 aa14.06□□□□□ -0.16
SCAF1-202ENST00000595242 LONP2Q86WA8 852 aa14.06□□□□□ -0.16
SCAF1-202ENST00000595242 REXO1Q8N1G1 1221 aaKnown RBP14.06□□□□□ -0.16
SCAF1-202ENST00000595242 SLC7A14Q8TBB6 771 aa14.06□□□□□ -0.16
SCAF1-202ENST00000595242 ERCC4Q92889 916 aaPredicted RBP14.06□□□□□ -0.16
SCAF1-202ENST00000595242 ELSPBP1Q96BH3 223 aa14.06□□□□□ -0.16
SCAF1-202ENST00000595242 MRFAP1L1Q96HT8 127 aa14.06□□□□□ -0.16
SCAF1-202ENST00000595242 ARRDC1-AS1Q9H2J1 176 aa14.06□□□□□ -0.16
SCAF1-202ENST00000595242 BRD9Q9H8M2 597 aa14.06□□□□□ -0.16
SCAF1-202ENST00000595242 GDE1Q9NZC3 331 aa14.06□□□□□ -0.16
SCAF1-202ENST00000595242 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.06□□□□□ -0.16
SCAF1-202ENST00000595242 MRPS23Q9Y3D9 190 aaKnown RBP14.06□□□□□ -0.16
SCAF1-202ENST00000595242 HES2Q9Y543 173 aa14.06□□□□□ -0.16
SCAF1-202ENST00000595242 PCDHA5Q9Y5H7 936 aa14.06□□□□□ -0.16
SCAF1-202ENST00000595242 COL4A3BPQ9Y5P4 624 aa14.06□□□□□ -0.16
SCAF1-202ENST00000595242 NUP205Q92621 2012 aa14.06□□□□□ -0.16
SCAF1-202ENST00000595242 ARID2Q68CP9 1835 aa14.06□□□□□ -0.16
SCAF1-202ENST00000595242 VWA3AA6NCI4 1184 aa14.05□□□□□ -0.16
SCAF1-202ENST00000595242 SRRM3A6NNA2 597 aaPredicted RBP14.05□□□□□ -0.16
SCAF1-202ENST00000595242 SMTNL1A8MU46 457 aa14.05□□□□□ -0.16
SCAF1-202ENST00000595242 AXIN1O15169 862 aa14.05□□□□□ -0.16
SCAF1-202ENST00000595242 MSH4O15457 936 aa14.05□□□□□ -0.16
SCAF1-202ENST00000595242 GAS7O60861 476 aa14.05□□□□□ -0.16
SCAF1-202ENST00000595242 TADA2AO75478 443 aa14.05□□□□□ -0.16
SCAF1-202ENST00000595242 POU2F2P09086 479 aa14.05□□□□□ -0.16
SCAF1-202ENST00000595242 ZNF806P0C7X5 589 aa14.05□□□□□ -0.16
SCAF1-202ENST00000595242 SRGAP2CP0DJJ0 459 aa14.05□□□□□ -0.16
SCAF1-202ENST00000595242 CIITAP33076 1130 aa14.05□□□□□ -0.16
SCAF1-202ENST00000595242 GAS6Q14393 721 aa14.05□□□□□ -0.16
SCAF1-202ENST00000595242 GRM2Q14416 872 aa14.05□□□□□ -0.16
SCAF1-202ENST00000595242 NCAPHQ15003 741 aa14.05□□□□□ -0.16
SCAF1-202ENST00000595242 INF2Q27J81 1249 aa14.05□□□□□ -0.16
SCAF1-202ENST00000595242 CT47A1Q5JQC4 288 aaPredicted RBP14.05□□□□□ -0.16
SCAF1-202ENST00000595242 POTEHQ6S545 545 aa14.05□□□□□ -0.16
SCAF1-202ENST00000595242 NEK8Q86SG6 692 aa14.05□□□□□ -0.16
SCAF1-202ENST00000595242 AOPEPQ8N6M6 819 aa14.05□□□□□ -0.16
SCAF1-202ENST00000595242 EPSTI1Q96J88 318 aa14.05□□□□□ -0.16
SCAF1-202ENST00000595242 RIT2Q99578 217 aa14.05□□□□□ -0.16
SCAF1-202ENST00000595242 EIF2AQ9BY44 585 aaKnown RBP14.05□□□□□ -0.16
SCAF1-202ENST00000595242 UNC45AQ9H3U1 944 aa14.05□□□□□ -0.16
SCAF1-202ENST00000595242 ADAMTS20P59510 1910 aa14.05□□□□□ -0.16
SCAF1-202ENST00000595242 BECN2A8MW95 431 aa14.04□□□□□ -0.16
SCAF1-202ENST00000595242 K7ESF4 209 aa14.04□□□□□ -0.16
SCAF1-202ENST00000595242 ZNF500O60304 480 aaPredicted RBP14.04□□□□□ -0.16
SCAF1-202ENST00000595242 PRR29P0C7W0 189 aa14.04□□□□□ -0.16
SCAF1-202ENST00000595242 CHRNB1P11230 501 aa14.04□□□□□ -0.16
SCAF1-202ENST00000595242 RING1Q06587 406 aa14.04□□□□□ -0.16
SCAF1-202ENST00000595242 MORC3Q14149 939 aa14.04□□□□□ -0.16
SCAF1-202ENST00000595242 PSMD5Q16401 504 aa14.04□□□□□ -0.16
SCAF1-202ENST00000595242 SLC5A9Q2M3M2 681 aa14.04□□□□□ -0.16
SCAF1-202ENST00000595242 LRCH2Q5VUJ6 765 aa14.04□□□□□ -0.16
SCAF1-202ENST00000595242 CEP57Q86XR8 500 aa14.04□□□□□ -0.16
SCAF1-202ENST00000595242 SPEM1Q8N4L4 309 aa14.04□□□□□ -0.16
SCAF1-202ENST00000595242 GSTCDQ8NEC7 633 aa14.04□□□□□ -0.16
SCAF1-202ENST00000595242 LNX1Q8TBB1 728 aaPredicted RBP14.04□□□□□ -0.16
SCAF1-202ENST00000595242 PRPF31Q8WWY3 499 aaKnown RBP14.04□□□□□ -0.16
SCAF1-202ENST00000595242 IRF7Q92985 503 aa14.04□□□□□ -0.16
SCAF1-202ENST00000595242 GJA10Q969M2 543 aa14.04□□□□□ -0.16
SCAF1-202ENST00000595242 AK8Q96MA6 479 aa14.04□□□□□ -0.16
SCAF1-202ENST00000595242 JPH2Q9BR39 696 aaPredicted RBP14.04□□□□□ -0.16
SCAF1-202ENST00000595242 TTPALQ9BTX7 342 aa14.04□□□□□ -0.16
SCAF1-202ENST00000595242 TRMT61BQ9BVS5 477 aaKnown RBP14.04□□□□□ -0.16
SCAF1-202ENST00000595242 APOL6Q9BWW8 343 aa14.04□□□□□ -0.16
SCAF1-202ENST00000595242 TEKT3Q9BXF9 490 aa14.04□□□□□ -0.16
SCAF1-202ENST00000595242 CCSER1Q9C0I3 900 aa14.04□□□□□ -0.16
SCAF1-202ENST00000595242 CACNG4Q9UBN1 327 aa14.04□□□□□ -0.16
SCAF1-202ENST00000595242 MAN1B1Q9UKM7 699 aa14.04□□□□□ -0.16
SCAF1-202ENST00000595242 LHX6Q9UPM6 363 aa14.04□□□□□ -0.16
SCAF1-202ENST00000595242 PIAS3Q9Y6X2 628 aa14.04□□□□□ -0.16
SCAF1-202ENST00000595242 SF3B1O75533 1304 aaKnown RBP eCLIP14.04□□□□□ -0.16
SCAF1-202ENST00000595242 LOC400499M0QZD8 3231 aa14.03□□□□□ -0.16
SCAF1-202ENST00000595242 A0A087WWV3 80 aa14.03□□□□□ -0.16
SCAF1-202ENST00000595242 TMEM8BA6NDV4 472 aa14.03□□□□□ -0.16
SCAF1-202ENST00000595242 GOLGA6L6A8MZA4 724 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms