RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 SLC10A6Q3KNW5 377 aa13.63□□□□□ -0.23
UPF1-203ENST00000594504 USP49Q70CQ1 688 aa13.63□□□□□ -0.23
UPF1-203ENST00000594504 C1orf210Q8IVY1 113 aa13.63□□□□□ -0.23
UPF1-203ENST00000594504 PJA1Q8NG27 643 aa13.63□□□□□ -0.23
UPF1-203ENST00000594504 ZNF461Q8TAF7 563 aa13.63□□□□□ -0.23
UPF1-203ENST00000594504 TCEAL4Q96EI5 215 aa13.63□□□□□ -0.23
UPF1-203ENST00000594504 DRC1Q96MC2 740 aa13.63□□□□□ -0.23
UPF1-203ENST00000594504 NTPCRQ9BSD7 190 aaKnown RBP13.63□□□□□ -0.23
UPF1-203ENST00000594504 TIPINQ9BVW5 301 aa13.63□□□□□ -0.23
UPF1-203ENST00000594504 HAPLN2Q9GZV7 340 aa13.63□□□□□ -0.23
UPF1-203ENST00000594504 CYP4F11Q9HBI6 524 aa13.63□□□□□ -0.23
UPF1-203ENST00000594504 SLC38A7Q9NVC3 462 aa13.63□□□□□ -0.23
UPF1-203ENST00000594504 KCND2Q9NZV8 630 aa13.63□□□□□ -0.23
UPF1-203ENST00000594504 CNTN3Q9P232 1028 aa13.63□□□□□ -0.23
UPF1-203ENST00000594504 ANKFY1Q9P2R3 1169 aa13.63□□□□□ -0.23
UPF1-203ENST00000594504 FBXL5Q9UKA1 691 aa13.63□□□□□ -0.23
UPF1-203ENST00000594504 MRPS23Q9Y3D9 190 aaKnown RBP13.63□□□□□ -0.23
UPF1-203ENST00000594504 RBM19Q9Y4C8 960 aaKnown RBP13.63□□□□□ -0.23
UPF1-203ENST00000594504 NUB1Q9Y5A7 615 aa13.63□□□□□ -0.23
UPF1-203ENST00000594504 MYH11P35749 1972 aa13.63□□□□□ -0.23
UPF1-203ENST00000594504 CITO14578 2027 aa13.63□□□□□ -0.23
UPF1-203ENST00000594504 KANSL1LA0AUZ9 987 aa13.62□□□□□ -0.23
UPF1-203ENST00000594504 PRRG1O14668 218 aa13.62□□□□□ -0.23
UPF1-203ENST00000594504 CUTAO60888 179 aa13.62□□□□□ -0.23
UPF1-203ENST00000594504 LRG1P02750 347 aa13.62□□□□□ -0.23
UPF1-203ENST00000594504 SP9P0CG40 484 aa13.62□□□□□ -0.23
UPF1-203ENST00000594504 KCNE1P15382 129 aa13.62□□□□□ -0.23
UPF1-203ENST00000594504 CEBPBP17676 345 aa13.62□□□□□ -0.23
UPF1-203ENST00000594504 GUCY2CP25092 1073 aa13.62□□□□□ -0.23
UPF1-203ENST00000594504 SLC12A3P55017 1021 aa13.62□□□□□ -0.23
UPF1-203ENST00000594504 MLF2Q15773 248 aaPredicted RBP13.62□□□□□ -0.23
UPF1-203ENST00000594504 TANGO2Q6ICL3 276 aa13.62□□□□□ -0.23
UPF1-203ENST00000594504 SLC8B1Q6J4K2 584 aa13.62□□□□□ -0.23
UPF1-203ENST00000594504 MTSS1LQ765P7 747 aa13.62□□□□□ -0.23
UPF1-203ENST00000594504 MAML2Q8IZL2 1156 aaPredicted RBP13.62□□□□□ -0.23
UPF1-203ENST00000594504 HS6ST3Q8IZP7 471 aa13.62□□□□□ -0.23
UPF1-203ENST00000594504 TMEM161BQ8NDZ6 487 aa13.62□□□□□ -0.23
UPF1-203ENST00000594504 RAD54LQ92698 747 aa13.62□□□□□ -0.23
UPF1-203ENST00000594504 CORO1BQ9BR76 489 aa13.62□□□□□ -0.23
UPF1-203ENST00000594504 BLOC1S4Q9NUP1 217 aa13.62□□□□□ -0.23
UPF1-203ENST00000594504 STK17AQ9UEE5 414 aa13.62□□□□□ -0.23
UPF1-203ENST00000594504 TUBGCP4Q9UGJ1 667 aa13.62□□□□□ -0.23
UPF1-203ENST00000594504 RCOR1Q9UKL0 485 aa13.62□□□□□ -0.23
UPF1-203ENST00000594504 KCNH3Q9ULD8 1083 aa13.62□□□□□ -0.23
UPF1-203ENST00000594504 ARHGEF37A1IGU5 675 aa13.61□□□□□ -0.23
UPF1-203ENST00000594504 FAM170BA6NMN3 283 aa13.61□□□□□ -0.23
UPF1-203ENST00000594504 POU2F2P09086 479 aa13.61□□□□□ -0.23
UPF1-203ENST00000594504 PLS3P13797 630 aa13.61□□□□□ -0.23
UPF1-203ENST00000594504 ATF2P15336 505 aa13.61□□□□□ -0.23
UPF1-203ENST00000594504 GJA1P17302 382 aa13.61□□□□□ -0.23
UPF1-203ENST00000594504 RPL9P32969 192 aaKnown RBP13.61□□□□□ -0.23
UPF1-203ENST00000594504 MCM4P33991 863 aa13.61□□□□□ -0.23
UPF1-203ENST00000594504 TNFSF9P41273 254 aa13.61□□□□□ -0.23
UPF1-203ENST00000594504 CCR2P41597 374 aa13.61□□□□□ -0.23
UPF1-203ENST00000594504 MATR3P43243 847 aaKnown RBP eCLIP13.61□□□□□ -0.23
UPF1-203ENST00000594504 ME1P48163 572 aa13.61□□□□□ -0.23
UPF1-203ENST00000594504 STRN3Q13033 797 aa13.61□□□□□ -0.23
UPF1-203ENST00000594504 UBXN2BQ14CS0 331 aa13.61□□□□□ -0.23
UPF1-203ENST00000594504 CTXN3Q4LDR2 81 aa13.61□□□□□ -0.23
UPF1-203ENST00000594504 ARSHQ5FYA8 562 aa13.61□□□□□ -0.23
UPF1-203ENST00000594504 RRAGBQ5VZM2 374 aa13.61□□□□□ -0.23
UPF1-203ENST00000594504 CCDC73Q6ZRK6 1079 aa13.61□□□□□ -0.23
UPF1-203ENST00000594504 LRRC15Q8TF66 581 aa13.61□□□□□ -0.23
UPF1-203ENST00000594504 SPIRE2Q8WWL2 714 aa13.61□□□□□ -0.23
UPF1-203ENST00000594504 LARP4BQ92615 738 aaKnown RBP13.61□□□□□ -0.23
UPF1-203ENST00000594504 DDX12PQ92771 950 aa13.61□□□□□ -0.23
UPF1-203ENST00000594504 SHDQ96IW2 340 aa13.61□□□□□ -0.23
UPF1-203ENST00000594504 DDX23Q9BUQ8 820 aaKnown RBP13.61□□□□□ -0.23
UPF1-203ENST00000594504 C17orf75Q9HAS0 396 aa13.61□□□□□ -0.23
UPF1-203ENST00000594504 TIMM13Q9Y5L4 95 aaPredicted RBP13.61□□□□□ -0.23
UPF1-203ENST00000594504 PDCD11Q14690 1871 aaKnown RBP13.61□□□□□ -0.23
UPF1-203ENST00000594504 MIA3Q5JRA6 1907 aa13.6□□□□□ -0.23
UPF1-203ENST00000594504 USP34Q70CQ2 3546 aa13.6□□□□□ -0.23
UPF1-203ENST00000594504 H7C4K7 107 aa13.6□□□□□ -0.23
UPF1-203ENST00000594504 SYN3O14994 580 aa13.6□□□□□ -0.23
UPF1-203ENST00000594504 TOM1L1O75674 476 aa13.6□□□□□ -0.23
UPF1-203ENST00000594504 LMNAP02545 664 aaKnown RBP13.6□□□□□ -0.23
UPF1-203ENST00000594504 CXCL8P10145 99 aa13.6□□□□□ -0.23
UPF1-203ENST00000594504 MAPTP10636 758 aaKnown RBP13.6□□□□□ -0.23
UPF1-203ENST00000594504 GUCY2FP51841 1108 aa13.6□□□□□ -0.23
UPF1-203ENST00000594504 SMTNP53814 917 aa13.6□□□□□ -0.23
UPF1-203ENST00000594504 ADCY1Q08828 1119 aa13.6□□□□□ -0.23
UPF1-203ENST00000594504 GRM2Q14416 872 aa13.6□□□□□ -0.23
UPF1-203ENST00000594504 DHX8Q14562 1220 aaKnown RBP13.6□□□□□ -0.23
UPF1-203ENST00000594504 MCM6Q14566 821 aa13.6□□□□□ -0.23
UPF1-203ENST00000594504 NOLC1Q14978 699 aaKnown RBP eCLIP13.6□□□□□ -0.23
UPF1-203ENST00000594504 PRSS36Q5K4E3 855 aa13.6□□□□□ -0.23
UPF1-203ENST00000594504 RNF19BQ6ZMZ0 732 aa13.6□□□□□ -0.23
UPF1-203ENST00000594504 RTL10Q7L3V2 364 aa13.6□□□□□ -0.23
UPF1-203ENST00000594504 GPBP1Q86WP2 473 aa13.6□□□□□ -0.23
UPF1-203ENST00000594504 TCEAL8Q8IYN2 117 aa13.6□□□□□ -0.23
UPF1-203ENST00000594504 DCLK2Q8N568 766 aa13.6□□□□□ -0.23
UPF1-203ENST00000594504 LEO1Q8WVC0 666 aaPredicted RBP13.6□□□□□ -0.23
UPF1-203ENST00000594504 SUSD3Q96L08 255 aa13.6□□□□□ -0.23
UPF1-203ENST00000594504 SPATA32Q96LK8 384 aa13.6□□□□□ -0.23
UPF1-203ENST00000594504 ZSWIM3Q96MP5 696 aa13.6□□□□□ -0.23
UPF1-203ENST00000594504 SCAND2PQ9GZW5 306 aaPredicted RBP13.6□□□□□ -0.23
UPF1-203ENST00000594504 HEBP1Q9NRV9 189 aa13.6□□□□□ -0.23
UPF1-203ENST00000594504 CEP72Q9P209 647 aa13.6□□□□□ -0.23
UPF1-203ENST00000594504 CIZ1Q9ULV3 898 aaPredicted RBP13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms