RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 SLC12A3P55017 1021 aa12.84□□□□□ -0.35
CLIP3-204ENST00000590559 ATP2C1P98194 919 aaPredicted RBP12.84□□□□□ -0.35
CLIP3-204ENST00000590559 MCL1Q07820 350 aa12.84□□□□□ -0.35
CLIP3-204ENST00000590559 ZBTB6Q15916 424 aa12.84□□□□□ -0.35
CLIP3-204ENST00000590559 KRT79Q5XKE5 535 aa12.84□□□□□ -0.35
CLIP3-204ENST00000590559 SYT2Q8N9I0 419 aaPredicted RBP12.84□□□□□ -0.35
CLIP3-204ENST00000590559 FAM184AQ8NB25 1140 aa12.84□□□□□ -0.35
CLIP3-204ENST00000590559 ZBTB44Q8NCP5 570 aa12.84□□□□□ -0.35
CLIP3-204ENST00000590559 DNASE1L2Q92874 299 aa12.84□□□□□ -0.35
CLIP3-204ENST00000590559 RMDN1Q96DB5 314 aa12.84□□□□□ -0.35
CLIP3-204ENST00000590559 TCEAL4Q96EI5 215 aa12.84□□□□□ -0.35
CLIP3-204ENST00000590559 PNMA5Q96PV4 448 aa12.84□□□□□ -0.35
CLIP3-204ENST00000590559 NELL2Q99435 816 aa12.84□□□□□ -0.35
CLIP3-204ENST00000590559 BCO2Q9BYV7 579 aa12.84□□□□□ -0.35
CLIP3-204ENST00000590559 MAFFQ9ULX9 164 aa12.84□□□□□ -0.35
CLIP3-204ENST00000590559 INSL5Q9Y5Q6 135 aa12.84□□□□□ -0.35
CLIP3-204ENST00000590559 NUP210Q8TEM1 1887 aaPredicted RBP12.84□□□□□ -0.35
CLIP3-204ENST00000590559 F5P12259 2224 aa12.84□□□□□ -0.35
CLIP3-204ENST00000590559 TTC26A0AVF1 554 aa12.83□□□□□ -0.36
CLIP3-204ENST00000590559 H7C4K7 107 aa12.83□□□□□ -0.36
CLIP3-204ENST00000590559 M0QZQ0 153 aa12.83□□□□□ -0.36
CLIP3-204ENST00000590559 FAM189A1O60320 539 aa12.83□□□□□ -0.36
CLIP3-204ENST00000590559 LILRB5O75023 590 aa12.83□□□□□ -0.36
CLIP3-204ENST00000590559 LRG1P02750 347 aa12.83□□□□□ -0.36
CLIP3-204ENST00000590559 ADRB2P07550 413 aa12.83□□□□□ -0.36
CLIP3-204ENST00000590559 PLS3P13797 630 aa12.83□□□□□ -0.36
CLIP3-204ENST00000590559 AARSP49588 968 aaKnown RBP eCLIP12.83□□□□□ -0.36
CLIP3-204ENST00000590559 GNL2Q13823 731 aaKnown RBP12.83□□□□□ -0.36
CLIP3-204ENST00000590559 FAM78AQ5JUQ0 283 aa12.83□□□□□ -0.36
CLIP3-204ENST00000590559 ZBTB41Q5SVQ8 909 aa12.83□□□□□ -0.36
CLIP3-204ENST00000590559 ZPBP2Q6X784 338 aa12.83□□□□□ -0.36
CLIP3-204ENST00000590559 DTHD1Q6ZMT9 781 aa12.83□□□□□ -0.36
CLIP3-204ENST00000590559 MAMSTRQ6ZN01 415 aa12.83□□□□□ -0.36
CLIP3-204ENST00000590559 MAP4K3Q8IVH8 894 aa12.83□□□□□ -0.36
CLIP3-204ENST00000590559 TMEM130Q8N3G9 435 aa12.83□□□□□ -0.36
CLIP3-204ENST00000590559 RUBCNQ92622 972 aa12.83□□□□□ -0.36
CLIP3-204ENST00000590559 DDX12PQ92771 950 aa12.83□□□□□ -0.36
CLIP3-204ENST00000590559 TBC1D32Q96NH3 1257 aa12.83□□□□□ -0.36
CLIP3-204ENST00000590559 ASB16Q96NS5 453 aa12.83□□□□□ -0.36
CLIP3-204ENST00000590559 TRPV4Q9HBA0 871 aa12.83□□□□□ -0.36
CLIP3-204ENST00000590559 TRPV5Q9NQA5 729 aa12.83□□□□□ -0.36
CLIP3-204ENST00000590559 HEBP1Q9NRV9 189 aa12.83□□□□□ -0.36
CLIP3-204ENST00000590559 CEP72Q9P209 647 aa12.83□□□□□ -0.36
CLIP3-204ENST00000590559 DENND4CQ5VZ89 1909 aa12.83□□□□□ -0.36
CLIP3-204ENST00000590559 KIF26AQ9ULI4 1882 aaPredicted RBP12.82□□□□□ -0.36
CLIP3-204ENST00000590559 SPTLC1O15269 473 aa12.82□□□□□ -0.36
CLIP3-204ENST00000590559 OAZ2O95190 189 aa12.82□□□□□ -0.36
CLIP3-204ENST00000590559 TDGF1P13385 188 aa12.82□□□□□ -0.36
CLIP3-204ENST00000590559 LRPAP1P30533 357 aa12.82□□□□□ -0.36
CLIP3-204ENST00000590559 ELF1P32519 619 aa12.82□□□□□ -0.36
CLIP3-204ENST00000590559 NCKAP1LP55160 1127 aa12.82□□□□□ -0.36
CLIP3-204ENST00000590559 NOLC1Q14978 699 aaKnown RBP eCLIP12.82□□□□□ -0.36
CLIP3-204ENST00000590559 UBXN2BQ14CS0 331 aa12.82□□□□□ -0.36
CLIP3-204ENST00000590559 TMEM119Q4V9L6 283 aa12.82□□□□□ -0.36
CLIP3-204ENST00000590559 SEZ6Q53EL9 994 aa12.82□□□□□ -0.36
CLIP3-204ENST00000590559 ARSHQ5FYA8 562 aa12.82□□□□□ -0.36
CLIP3-204ENST00000590559 TPRG1Q6ZUI0 275 aa12.82□□□□□ -0.36
CLIP3-204ENST00000590559 KIAA2013Q8IYS2 634 aa12.82□□□□□ -0.36
CLIP3-204ENST00000590559 DCLK2Q8N568 766 aa12.82□□□□□ -0.36
CLIP3-204ENST00000590559 KCNG4Q8TDN1 519 aa12.82□□□□□ -0.36
CLIP3-204ENST00000590559 ZSWIM3Q96MP5 696 aa12.82□□□□□ -0.36
CLIP3-204ENST00000590559 CORO1BQ9BR76 489 aa12.82□□□□□ -0.36
CLIP3-204ENST00000590559 TCHPQ9BT92 498 aa12.82□□□□□ -0.36
CLIP3-204ENST00000590559 LRRC3Q9BY71 257 aa12.82□□□□□ -0.36
CLIP3-204ENST00000590559 CYP4F11Q9HBI6 524 aa12.82□□□□□ -0.36
CLIP3-204ENST00000590559 PRMT8Q9NR22 394 aaPredicted RBP12.82□□□□□ -0.36
CLIP3-204ENST00000590559 SPATA6Q9NWH7 488 aaPredicted RBP12.82□□□□□ -0.36
CLIP3-204ENST00000590559 DLL3Q9NYJ7 618 aa12.82□□□□□ -0.36
CLIP3-204ENST00000590559 KCND2Q9NZV8 630 aa12.82□□□□□ -0.36
CLIP3-204ENST00000590559 TUBGCP4Q9UGJ1 667 aa12.82□□□□□ -0.36
CLIP3-204ENST00000590559 AFF4Q9UHB7 1163 aaKnown RBP12.82□□□□□ -0.36
CLIP3-204ENST00000590559 KCNG1Q9UIX4 513 aa12.82□□□□□ -0.36
CLIP3-204ENST00000590559 PCDHB8Q9UN66 801 aa12.82□□□□□ -0.36
CLIP3-204ENST00000590559 PCDHGA2Q9Y5H1 932 aa12.82□□□□□ -0.36
CLIP3-204ENST00000590559 NCANO14594 1321 aa12.82□□□□□ -0.36
CLIP3-204ENST00000590559 SCN1AP35498 2009 aa12.81□□□□□ -0.36
CLIP3-204ENST00000590559 ARNTLO00327 626 aa12.81□□□□□ -0.36
CLIP3-204ENST00000590559 PRRG1O14668 218 aa12.81□□□□□ -0.36
CLIP3-204ENST00000590559 ZNF197O14709 1029 aa12.81□□□□□ -0.36
CLIP3-204ENST00000590559 LAMTOR5O43504 91 aa12.81□□□□□ -0.36
CLIP3-204ENST00000590559 ADCY1Q08828 1119 aa12.81□□□□□ -0.36
CLIP3-204ENST00000590559 C8orf34Q49A92 452 aa12.81□□□□□ -0.36
CLIP3-204ENST00000590559 CTXN3Q4LDR2 81 aa12.81□□□□□ -0.36
CLIP3-204ENST00000590559 RILPL1Q5EBL4 403 aa12.81□□□□□ -0.36
CLIP3-204ENST00000590559 ZNF280DQ6N043 979 aa12.81□□□□□ -0.36
CLIP3-204ENST00000590559 VITQ6UXI7 678 aa12.81□□□□□ -0.36
CLIP3-204ENST00000590559 RNF19BQ6ZMZ0 732 aa12.81□□□□□ -0.36
CLIP3-204ENST00000590559 HS6ST3Q8IZP7 471 aa12.81□□□□□ -0.36
CLIP3-204ENST00000590559 APPL2Q8NEU8 664 aa12.81□□□□□ -0.36
CLIP3-204ENST00000590559 LRRC15Q8TF66 581 aa12.81□□□□□ -0.36
CLIP3-204ENST00000590559 PLEKHA5Q9HAU0 1116 aa12.81□□□□□ -0.36
CLIP3-204ENST00000590559 ZNF334Q9HCZ1 680 aaPredicted RBP12.81□□□□□ -0.36
CLIP3-204ENST00000590559 NUB1Q9Y5A7 615 aa12.81□□□□□ -0.36
CLIP3-204ENST00000590559 CLDN3O15551 220 aa12.8□□□□□ -0.36
CLIP3-204ENST00000590559 KINO60870 393 aaKnown RBP12.8□□□□□ -0.36
CLIP3-204ENST00000590559 PIGRP01833 764 aa12.8□□□□□ -0.36
CLIP3-204ENST00000590559 CLTAP09496 248 aa12.8□□□□□ -0.36
CLIP3-204ENST00000590559 CXCL8P10145 99 aa12.8□□□□□ -0.36
CLIP3-204ENST00000590559 CYP3A5P20815 502 aa12.8□□□□□ -0.36
CLIP3-204ENST00000590559 SMTNP53814 917 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms