RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 SYNE3Q6ZMZ3 975 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 LRRC69Q6ZNQ3 347 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 ZNF662Q6ZS27 426 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 TSHZ1Q6ZSZ6 1077 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 WDR5BQ86VZ2 330 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 PPFIBP1Q86W92 1011 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 MARCH9Q86YJ5 346 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 AMOTL1Q8IY63 956 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 VPS52Q8N1B4 723 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 CEP120Q8N960 986 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 ZNF511Q8NB15 262 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 ANKRD20A12PQ8NF67 263 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 CCDC148Q8NFR7 591 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 GAB3Q8WWW8 586 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 SMG7Q92540 1137 aaKnown RBP4.55□□□□□ -1.68
LIG3-211ENST00000588713 CCDC17Q96LX7 622 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 CCDC8Q9H0W5 538 aaPredicted RBP4.55□□□□□ -1.68
LIG3-211ENST00000588713 BOLA2Q9H3K6 86 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 RNPEPQ9H4A4 650 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 AGO3Q9H9G7 860 aaKnown RBP4.55□□□□□ -1.68
LIG3-211ENST00000588713 ABCB6Q9NP58 842 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 PIH1D3Q9NQM4 214 aaKnown RBP4.55□□□□□ -1.68
LIG3-211ENST00000588713 MAN1C1Q9NR34 630 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 SETD4Q9NVD3 440 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 DONSONQ9NYP3 566 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 SPG21Q9NZD8 308 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 HSPBP1Q9NZL4 362 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 PRR12Q9ULL5 1215 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 HPCAL4Q9UM19 191 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 CEP83Q9Y592 693 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 HEMK1Q9Y5R4 338 aaPredicted RBP4.55□□□□□ -1.68
LIG3-211ENST00000588713 CLIC4Q9Y696 253 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 SDK1Q7Z5N4 2213 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 ACACAQ13085 2346 aa4.55□□□□□ -1.68
LIG3-211ENST00000588713 LCTP09848 1927 aa4.54□□□□□ -1.68
LIG3-211ENST00000588713 NT5C1B-RDH14C9J2C7 533 aa4.54□□□□□ -1.68
LIG3-211ENST00000588713 GOLGA8KD6RF30 607 aa4.54□□□□□ -1.68
LIG3-211ENST00000588713 ERVH48-1M5A8F1 160 aa4.54□□□□□ -1.68
LIG3-211ENST00000588713 BIN1O00499 593 aa4.54□□□□□ -1.68
LIG3-211ENST00000588713 EIF3HO15372 352 aaKnown RBP eCLIP4.54□□□□□ -1.68
LIG3-211ENST00000588713 DTNBO60941 627 aa4.54□□□□□ -1.68
LIG3-211ENST00000588713 RFPL2O75678 378 aa4.54□□□□□ -1.68
LIG3-211ENST00000588713 FSBPO95073 299 aa4.54□□□□□ -1.68
LIG3-211ENST00000588713 SSBP05455 408 aaKnown RBP eCLIP4.54□□□□□ -1.68
LIG3-211ENST00000588713 CR2P20023 1033 aa4.54□□□□□ -1.68
LIG3-211ENST00000588713 KLRC2P26717 231 aa4.54□□□□□ -1.68
LIG3-211ENST00000588713 EIF2S3P41091 472 aaKnown RBP4.54□□□□□ -1.68
LIG3-211ENST00000588713 IL12RB1P42701 662 aa4.54□□□□□ -1.68
LIG3-211ENST00000588713 CDK8P49336 464 aa4.54□□□□□ -1.68
LIG3-211ENST00000588713 SARSP49591 514 aaKnown RBP4.54□□□□□ -1.68
LIG3-211ENST00000588713 WDR4P57081 412 aaKnown RBP4.54□□□□□ -1.68
LIG3-211ENST00000588713 SPAG1Q07617 926 aa4.54□□□□□ -1.68
LIG3-211ENST00000588713 MGAT3Q09327 533 aa4.54□□□□□ -1.68
LIG3-211ENST00000588713 TFCP2Q12800 502 aa4.54□□□□□ -1.68
LIG3-211ENST00000588713 PPFIA1Q13136 1202 aa4.54□□□□□ -1.68
LIG3-211ENST00000588713 PAK2Q13177 524 aa4.54□□□□□ -1.68
LIG3-211ENST00000588713 NNTQ13423 1086 aa4.54□□□□□ -1.68
LIG3-211ENST00000588713 MORC3Q14149 939 aa4.54□□□□□ -1.68
LIG3-211ENST00000588713 GAS6Q14393 721 aa4.54□□□□□ -1.68
LIG3-211ENST00000588713 MCM6Q14566 821 aa4.54□□□□□ -1.68
LIG3-211ENST00000588713 KARSQ15046 597 aaKnown RBP4.54□□□□□ -1.68
LIG3-211ENST00000588713 POSTNQ15063 836 aa4.54□□□□□ -1.68
LIG3-211ENST00000588713 PTPAQ15257 358 aa4.54□□□□□ -1.68
LIG3-211ENST00000588713 AMHR2Q16671 573 aa4.54□□□□□ -1.68
LIG3-211ENST00000588713 TTC39AQ5SRH9 613 aa4.54□□□□□ -1.68
LIG3-211ENST00000588713 CDKAL1Q5VV42 579 aa4.54□□□□□ -1.68
LIG3-211ENST00000588713 MRPL14Q6P1L8 145 aaKnown RBP4.54□□□□□ -1.68
LIG3-211ENST00000588713 SHC4Q6S5L8 630 aa4.54□□□□□ -1.68
LIG3-211ENST00000588713 KRT25Q7Z3Z0 450 aa4.54□□□□□ -1.68
LIG3-211ENST00000588713 MB21D2Q8IYB1 491 aaPredicted RBP4.54□□□□□ -1.68
LIG3-211ENST00000588713 SLC35F6Q8N357 371 aa4.54□□□□□ -1.68
LIG3-211ENST00000588713 PPTC7Q8NI37 304 aa4.54□□□□□ -1.68
LIG3-211ENST00000588713 FAM76AQ8TAV0 307 aa4.54□□□□□ -1.68
LIG3-211ENST00000588713 COG1Q8WTW3 980 aa4.54□□□□□ -1.68
LIG3-211ENST00000588713 SDR42E1Q8WUS8 393 aa4.54□□□□□ -1.68
LIG3-211ENST00000588713 DRC1Q96MC2 740 aa4.54□□□□□ -1.68
LIG3-211ENST00000588713 SPATA33Q96N06 139 aa4.54□□□□□ -1.68
LIG3-211ENST00000588713 IER2Q9BTL4 223 aa4.54□□□□□ -1.68
LIG3-211ENST00000588713 PHF20Q9BVI0 1012 aa4.54□□□□□ -1.68
LIG3-211ENST00000588713 GNL3Q9BVP2 549 aaKnown RBP eCLIP4.54□□□□□ -1.68
LIG3-211ENST00000588713 FTHL17Q9BXU8 183 aa4.54□□□□□ -1.68
LIG3-211ENST00000588713 ZBP1Q9H171 429 aa4.54□□□□□ -1.68
LIG3-211ENST00000588713 ZNF768Q9H5H4 540 aaKnown RBP4.54□□□□□ -1.68
LIG3-211ENST00000588713 CXorf56Q9H5V9 222 aa4.54□□□□□ -1.68
LIG3-211ENST00000588713 FANCLQ9NW38 375 aa4.54□□□□□ -1.68
LIG3-211ENST00000588713 C2orf42Q9NWW7 574 aa4.54□□□□□ -1.68
LIG3-211ENST00000588713 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP4.54□□□□□ -1.68
LIG3-211ENST00000588713 DBNLQ9UJU6 430 aaKnown RBP4.54□□□□□ -1.68
LIG3-211ENST00000588713 GGA2Q9UJY4 613 aa4.54□□□□□ -1.68
LIG3-211ENST00000588713 MAN1B1Q9UKM7 699 aa4.54□□□□□ -1.68
LIG3-211ENST00000588713 NFE2L3Q9Y4A8 694 aa4.54□□□□□ -1.68
LIG3-211ENST00000588713 CDY2AQ9Y6F7 541 aa4.54□□□□□ -1.68
LIG3-211ENST00000588713 C2orf16Q68DN1 1984 aa4.54□□□□□ -1.68
LIG3-211ENST00000588713 CYP2D7A0A087X1C5 515 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 LOC102724159A0A0B4J2E5 919 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 ANO9A1A5B4 782 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 TRABD2BA6NFA1 517 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 SOWAHDA6NJG2 315 aa4.53□□□□□ -1.68
LIG3-211ENST00000588713 LRRIQ3A6PVS8 624 aaPredicted RBP4.53□□□□□ -1.68
LIG3-211ENST00000588713 H3BRB1 525 aa4.53□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms