RNA–Protein interactions for RNA: ENST00000588131.1

VMP1-207, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-207ENST00000588131 AGAP1Q9UPQ3 857 aa12.17□□□□□ -0.46
VMP1-207ENST00000588131 GIT1Q9Y2X7 761 aa12.17□□□□□ -0.46
VMP1-207ENST00000588131 TET1Q8NFU7 2136 aa12.17□□□□□ -0.46
VMP1-207ENST00000588131 KIAA0100Q14667 2235 aaKnown RBP12.17□□□□□ -0.46
VMP1-207ENST00000588131 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.16□□□□□ -0.46
VMP1-207ENST00000588131 SPDYE4A6NLX3 237 aa12.16□□□□□ -0.46
VMP1-207ENST00000588131 F8VZ95 297 aa12.16□□□□□ -0.46
VMP1-207ENST00000588131 OFD1O75665 1012 aa12.16□□□□□ -0.46
VMP1-207ENST00000588131 RFX1P22670 979 aa12.16□□□□□ -0.46
VMP1-207ENST00000588131 HNRNPH3P31942 346 aaKnown RBP12.16□□□□□ -0.46
VMP1-207ENST00000588131 RFC2P35250 354 aa12.16□□□□□ -0.46
VMP1-207ENST00000588131 SCNN1GP51170 649 aa12.16□□□□□ -0.46
VMP1-207ENST00000588131 NAB2Q15742 525 aa12.16□□□□□ -0.46
VMP1-207ENST00000588131 MEA1Q16626 185 aa12.16□□□□□ -0.46
VMP1-207ENST00000588131 SGSM1Q2NKQ1 1148 aa12.16□□□□□ -0.46
VMP1-207ENST00000588131 ZNF699Q32M78 642 aa12.16□□□□□ -0.46
VMP1-207ENST00000588131 SFMBT2Q5VUG0 894 aa12.16□□□□□ -0.46
VMP1-207ENST00000588131 SPAG5Q96R06 1193 aa12.16□□□□□ -0.46
VMP1-207ENST00000588131 RPS6KC1Q96S38 1066 aa12.16□□□□□ -0.46
VMP1-207ENST00000588131 TSPAN18Q96SJ8 248 aa12.16□□□□□ -0.46
VMP1-207ENST00000588131 CHP1Q99653 195 aa12.16□□□□□ -0.46
VMP1-207ENST00000588131 ARID3AQ99856 593 aa12.16□□□□□ -0.46
VMP1-207ENST00000588131 BAG1Q99933 345 aaPredicted RBP12.16□□□□□ -0.46
VMP1-207ENST00000588131 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.16□□□□□ -0.46
VMP1-207ENST00000588131 CACNG4Q9UBN1 327 aa12.16□□□□□ -0.46
VMP1-207ENST00000588131 PYCARDQ9ULZ3 195 aa12.16□□□□□ -0.46
VMP1-207ENST00000588131 POLIQ9UNA4 740 aa12.16□□□□□ -0.46
VMP1-207ENST00000588131 DAAM1Q9Y4D1 1078 aa12.16□□□□□ -0.46
VMP1-207ENST00000588131 LTBP2Q14767 1821 aa12.16□□□□□ -0.46
VMP1-207ENST00000588131 MICAL3Q7RTP6 2002 aa12.15□□□□□ -0.46
VMP1-207ENST00000588131 ANO9A1A5B4 782 aa12.15□□□□□ -0.46
VMP1-207ENST00000588131 SOWAHDA6NJG2 315 aa12.15□□□□□ -0.46
VMP1-207ENST00000588131 GFPT2O94808 682 aa12.15□□□□□ -0.46
VMP1-207ENST00000588131 CLSTN1O94985 981 aa12.15□□□□□ -0.46
VMP1-207ENST00000588131 EOMESO95936 686 aa12.15□□□□□ -0.46
VMP1-207ENST00000588131 POMCP01189 267 aa12.15□□□□□ -0.46
VMP1-207ENST00000588131 PLEKP08567 350 aaPredicted RBP12.15□□□□□ -0.46
VMP1-207ENST00000588131 FGFR1P11362 822 aa12.15□□□□□ -0.46
VMP1-207ENST00000588131 SKILP12757 684 aa12.15□□□□□ -0.46
VMP1-207ENST00000588131 CSF2RAP15509 400 aa12.15□□□□□ -0.46
VMP1-207ENST00000588131 RAG1P15918 1043 aa12.15□□□□□ -0.46
VMP1-207ENST00000588131 CYP3A5P20815 502 aa12.15□□□□□ -0.46
VMP1-207ENST00000588131 SOX5P35711 763 aa12.15□□□□□ -0.46
VMP1-207ENST00000588131 STAT1P42224 750 aa12.15□□□□□ -0.46
VMP1-207ENST00000588131 MFAP3P55082 362 aa12.15□□□□□ -0.46
VMP1-207ENST00000588131 RBP5P82980 135 aa12.15□□□□□ -0.46
VMP1-207ENST00000588131 GCNT1Q02742 428 aa12.15□□□□□ -0.46
VMP1-207ENST00000588131 CUL2Q13617 745 aa12.15□□□□□ -0.46
VMP1-207ENST00000588131 ASIC2Q16515 512 aa12.15□□□□□ -0.46
VMP1-207ENST00000588131 CLLU1OSQ5K130 101 aa12.15□□□□□ -0.46
VMP1-207ENST00000588131 C9orf57Q5W0N0 161 aa12.15□□□□□ -0.46
VMP1-207ENST00000588131 CNKSR3Q6P9H4 555 aa12.15□□□□□ -0.46
VMP1-207ENST00000588131 CCDC112Q8NEF3 446 aa12.15□□□□□ -0.46
VMP1-207ENST00000588131 TAF4BQ92750 862 aa12.15□□□□□ -0.46
VMP1-207ENST00000588131 IMPG2Q9BZV3 1241 aa12.15□□□□□ -0.46
VMP1-207ENST00000588131 NUCKS1Q9H1E3 243 aaKnown RBP12.15□□□□□ -0.46
VMP1-207ENST00000588131 UBN1Q9NPG3 1134 aa12.15□□□□□ -0.46
VMP1-207ENST00000588131 TMEM161AQ9NX61 479 aa12.15□□□□□ -0.46
VMP1-207ENST00000588131 AIPL1Q9NZN9 384 aa12.15□□□□□ -0.46
VMP1-207ENST00000588131 MYO6Q9UM54 1294 aa12.15□□□□□ -0.46
VMP1-207ENST00000588131 INPP5FQ9Y2H2 1132 aa12.15□□□□□ -0.46
VMP1-207ENST00000588131 DNAH12Q6ZR08 3092 aa12.14□□□□□ -0.47
VMP1-207ENST00000588131 TDRD15B5MCY1 1934 aaKnown RBP12.14□□□□□ -0.47
VMP1-207ENST00000588131 FOXN3O00409 490 aaPredicted RBP12.14□□□□□ -0.47
VMP1-207ENST00000588131 PIRO00625 290 aa12.14□□□□□ -0.47
VMP1-207ENST00000588131 INPPL1O15357 1258 aa12.14□□□□□ -0.47
VMP1-207ENST00000588131 XPOTO43592 962 aaKnown RBP12.14□□□□□ -0.47
VMP1-207ENST00000588131 STAU1O95793 577 aaKnown RBP12.14□□□□□ -0.47
VMP1-207ENST00000588131 THP07101 528 aa12.14□□□□□ -0.47
VMP1-207ENST00000588131 ACO1P21399 889 aaKnown RBP12.14□□□□□ -0.47
VMP1-207ENST00000588131 LRPAP1P30533 357 aa12.14□□□□□ -0.47
VMP1-207ENST00000588131 ATICP31939 592 aa12.14□□□□□ -0.47
VMP1-207ENST00000588131 ASPAP45381 313 aa12.14□□□□□ -0.47
VMP1-207ENST00000588131 GATMP50440 423 aa12.14□□□□□ -0.47
VMP1-207ENST00000588131 ARID5AQ03989 594 aa12.14□□□□□ -0.47
VMP1-207ENST00000588131 MTF1Q14872 753 aa12.14□□□□□ -0.47
VMP1-207ENST00000588131 TSR1Q2NL82 804 aaKnown RBP12.14□□□□□ -0.47
VMP1-207ENST00000588131 HGSNATQ68CP4 663 aa12.14□□□□□ -0.47
VMP1-207ENST00000588131 MFSD5Q6N075 450 aa12.14□□□□□ -0.47
VMP1-207ENST00000588131 RAD9BQ6WBX8 426 aa12.14□□□□□ -0.47
VMP1-207ENST00000588131 SCARA5Q6ZMJ2 495 aa12.14□□□□□ -0.47
VMP1-207ENST00000588131 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.14□□□□□ -0.473e-6■■■■□ 19.8
VMP1-207ENST00000588131 IRF2BP2Q7Z5L9 587 aa12.14□□□□□ -0.47
VMP1-207ENST00000588131 C7orf61Q8IZ16 206 aa12.14□□□□□ -0.47
VMP1-207ENST00000588131 CRIPAKQ8N1N5 446 aa12.14□□□□□ -0.47
VMP1-207ENST00000588131 UBR7Q8N806 425 aa12.14□□□□□ -0.47
VMP1-207ENST00000588131 SHC3Q92529 594 aa12.14□□□□□ -0.47
VMP1-207ENST00000588131 SYN2Q92777 582 aaPredicted RBP12.14□□□□□ -0.47
VMP1-207ENST00000588131 HPDLQ96IR7 371 aa12.14□□□□□ -0.47
VMP1-207ENST00000588131 NIF3L1Q9GZT8 377 aa12.14□□□□□ -0.47
VMP1-207ENST00000588131 SDCBP2Q9H190 292 aa12.14□□□□□ -0.47
VMP1-207ENST00000588131 ELAC1Q9H777 363 aaKnown RBP12.14□□□□□ -0.47
VMP1-207ENST00000588131 VRTNQ9H8Y1 702 aa12.14□□□□□ -0.47
VMP1-207ENST00000588131 ARHGAP20Q9P2F6 1191 aa12.14□□□□□ -0.47
VMP1-207ENST00000588131 NXF1Q9UBU9 619 aaKnown RBP12.14□□□□□ -0.47
VMP1-207ENST00000588131 SPTLC1O15269 473 aa12.13□□□□□ -0.47
VMP1-207ENST00000588131 EVI5O60447 810 aa12.13□□□□□ -0.47
VMP1-207ENST00000588131 B4GALT3O60512 393 aa12.13□□□□□ -0.47
VMP1-207ENST00000588131 ACRP10323 421 aa12.13□□□□□ -0.47
VMP1-207ENST00000588131 FERP16591 822 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms