RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 PRKCBP05771 671 aa5.8□□□□□ -1.48
LIG3-210ENST00000588109 SFPQP23246 707 aaKnown RBP eCLIP5.8□□□□□ -1.48
LIG3-210ENST00000588109 CCNE1P24864 410 aa5.8□□□□□ -1.48
LIG3-210ENST00000588109 MATR3P43243 847 aaKnown RBP eCLIP5.8□□□□□ -1.48
LIG3-210ENST00000588109 LIG4P49917 911 aa5.8□□□□□ -1.48
LIG3-210ENST00000588109 AFF1P51825 1210 aaKnown RBP5.8□□□□□ -1.48
LIG3-210ENST00000588109 PTENP60484 403 aa5.8□□□□□ -1.48
LIG3-210ENST00000588109 MRPS6P82932 125 aaKnown RBP5.8□□□□□ -1.48
LIG3-210ENST00000588109 GTF2BQ00403 316 aa5.8□□□□□ -1.48
LIG3-210ENST00000588109 MYL5Q02045 173 aa5.8□□□□□ -1.48
LIG3-210ENST00000588109 LRRC63Q05C16 580 aa5.8□□□□□ -1.48
LIG3-210ENST00000588109 NCBP1Q09161 790 aaKnown RBP5.8□□□□□ -1.48
LIG3-210ENST00000588109 PRPF4BQ13523 1007 aaKnown RBP5.8□□□□□ -1.48
LIG3-210ENST00000588109 BMT2Q1RMZ1 405 aa5.8□□□□□ -1.48
LIG3-210ENST00000588109 COBLL1Q53SF7 1204 aa5.8□□□□□ -1.48
LIG3-210ENST00000588109 SLC39A5Q6ZMH5 540 aa5.8□□□□□ -1.48
LIG3-210ENST00000588109 EPM2AIP1Q7L775 607 aaPredicted RBP5.8□□□□□ -1.48
LIG3-210ENST00000588109 NECAB2Q7Z6G3 386 aa5.8□□□□□ -1.48
LIG3-210ENST00000588109 LUZP1Q86V48 1076 aa5.8□□□□□ -1.48
LIG3-210ENST00000588109 WFDC8Q8IUA0 241 aa5.8□□□□□ -1.48
LIG3-210ENST00000588109 CREBRFQ8IUR6 639 aa5.8□□□□□ -1.48
LIG3-210ENST00000588109 DMRTC2Q8IXT2 367 aaPredicted RBP5.8□□□□□ -1.48
LIG3-210ENST00000588109 C1orf127Q8N9H9 656 aa5.8□□□□□ -1.48
LIG3-210ENST00000588109 SLC43A3Q8NBI5 491 aa5.8□□□□□ -1.48
LIG3-210ENST00000588109 TMEM161BQ8NDZ6 487 aa5.8□□□□□ -1.48
LIG3-210ENST00000588109 GOLGA5Q8TBA6 731 aa5.8□□□□□ -1.48
LIG3-210ENST00000588109 ZNF507Q8TCN5 953 aa5.8□□□□□ -1.48
LIG3-210ENST00000588109 DIS3LQ8TF46 1054 aaKnown RBP5.8□□□□□ -1.48
LIG3-210ENST00000588109 NOC3LQ8WTT2 800 aaKnown RBP5.8□□□□□ -1.48
LIG3-210ENST00000588109 TTC9Q92623 222 aa5.8□□□□□ -1.48
LIG3-210ENST00000588109 TRIM11Q96F44 468 aa5.8□□□□□ -1.48
LIG3-210ENST00000588109 PAWRQ96IZ0 340 aaKnown RBP5.8□□□□□ -1.48
LIG3-210ENST00000588109 FIZ1Q96SL8 496 aa5.8□□□□□ -1.48
LIG3-210ENST00000588109 OSMRQ99650 979 aa5.8□□□□□ -1.48
LIG3-210ENST00000588109 LPIN3Q9BQK8 851 aa5.8□□□□□ -1.48
LIG3-210ENST00000588109 BPIFA3Q9BQP9 254 aa5.8□□□□□ -1.48
LIG3-210ENST00000588109 MRPL4Q9BYD3 311 aaKnown RBP5.8□□□□□ -1.48
LIG3-210ENST00000588109 GBP3Q9H0R5 595 aa5.8□□□□□ -1.48
LIG3-210ENST00000588109 ST6GALNAC4Q9H4F1 302 aa5.8□□□□□ -1.48
LIG3-210ENST00000588109 SUV39H2Q9H5I1 410 aa5.8□□□□□ -1.48
LIG3-210ENST00000588109 CBX8Q9HC52 389 aa5.8□□□□□ -1.48
LIG3-210ENST00000588109 PRMT7Q9NVM4 692 aaPredicted RBP5.8□□□□□ -1.48
LIG3-210ENST00000588109 CNTN3Q9P232 1028 aa5.8□□□□□ -1.48
LIG3-210ENST00000588109 ARHGAP28Q9P2N2 729 aa5.8□□□□□ -1.48
LIG3-210ENST00000588109 NAGPAQ9UK23 515 aa5.8□□□□□ -1.48
LIG3-210ENST00000588109 ATP11BQ9Y2G3 1177 aa5.8□□□□□ -1.48
LIG3-210ENST00000588109 TRPV2Q9Y5S1 764 aa5.8□□□□□ -1.48
LIG3-210ENST00000588109 CDY2AQ9Y6F7 541 aa5.8□□□□□ -1.48
LIG3-210ENST00000588109 CENPFP49454 3210 aa5.8□□□□□ -1.48
LIG3-210ENST00000588109 EVPLQ92817 2033 aa5.8□□□□□ -1.48
LIG3-210ENST00000588109 PDXKO00764 312 aa5.79□□□□□ -1.48
LIG3-210ENST00000588109 IKBKBO14920 756 aa5.79□□□□□ -1.48
LIG3-210ENST00000588109 CAND2O75155 1236 aa5.79□□□□□ -1.48
LIG3-210ENST00000588109 GPR32O75388 356 aa5.79□□□□□ -1.48
LIG3-210ENST00000588109 TNFRSF21O75509 655 aa5.79□□□□□ -1.48
LIG3-210ENST00000588109 CSDE1O75534 798 aaKnown RBP5.79□□□□□ -1.48
LIG3-210ENST00000588109 FGFR1OPO95684 399 aaKnown RBP5.79□□□□□ -1.48
LIG3-210ENST00000588109 HARSP12081 509 aaKnown RBP5.79□□□□□ -1.48
LIG3-210ENST00000588109 COL6A1P12109 1028 aa5.79□□□□□ -1.48
LIG3-210ENST00000588109 DARSP14868 501 aaKnown RBP5.79□□□□□ -1.48
LIG3-210ENST00000588109 NR2F2P24468 414 aa5.79□□□□□ -1.48
LIG3-210ENST00000588109 RPL13P26373 211 aaKnown RBP5.79□□□□□ -1.48
LIG3-210ENST00000588109 HOXD13P35453 343 aa5.79□□□□□ -1.48
LIG3-210ENST00000588109 CDK7P50613 346 aa5.79□□□□□ -1.48
LIG3-210ENST00000588109 CYP2J2P51589 502 aa5.79□□□□□ -1.48
LIG3-210ENST00000588109 CRYBB1P53674 252 aaPredicted RBP5.79□□□□□ -1.48
LIG3-210ENST00000588109 PMS1P54277 932 aaKnown RBP5.79□□□□□ -1.48
LIG3-210ENST00000588109 TLE2Q04725 743 aa5.79□□□□□ -1.48
LIG3-210ENST00000588109 MBTD1Q05BQ5 628 aa5.79□□□□□ -1.48
LIG3-210ENST00000588109 POU5F1BQ06416 359 aa5.79□□□□□ -1.48
LIG3-210ENST00000588109 BFSP2Q13515 415 aa5.79□□□□□ -1.48
LIG3-210ENST00000588109 TRIM60Q495X7 471 aa5.79□□□□□ -1.48
LIG3-210ENST00000588109 HSP90AA4PQ58FG1 418 aa5.79□□□□□ -1.48
LIG3-210ENST00000588109 SPATA1Q5VX52 437 aa5.79□□□□□ -1.48
LIG3-210ENST00000588109 CEP135Q66GS9 1140 aa5.79□□□□□ -1.48
LIG3-210ENST00000588109 CDCA2Q69YH5 1023 aaPredicted RBP5.79□□□□□ -1.48
LIG3-210ENST00000588109 ANKRD40Q6AI12 368 aa5.79□□□□□ -1.48
LIG3-210ENST00000588109 CENPPQ6IPU0 288 aa5.79□□□□□ -1.48
LIG3-210ENST00000588109 ARMCX5Q6P1M9 558 aa5.79□□□□□ -1.48
LIG3-210ENST00000588109 CATSPER4Q7RTX7 472 aa5.79□□□□□ -1.48
LIG3-210ENST00000588109 SRGAP1Q7Z6B7 1085 aa5.79□□□□□ -1.48
LIG3-210ENST00000588109 GAS2L3Q86XJ1 694 aa5.79□□□□□ -1.48
LIG3-210ENST00000588109 MAP4K3Q8IVH8 894 aa5.79□□□□□ -1.48
LIG3-210ENST00000588109 DHX40Q8IX18 779 aaKnown RBP5.79□□□□□ -1.48
LIG3-210ENST00000588109 FAM126BQ8IXS8 530 aa5.79□□□□□ -1.48
LIG3-210ENST00000588109 GJD3Q8N144 294 aa5.79□□□□□ -1.48
LIG3-210ENST00000588109 CACTIN-AS1Q8N1I8 211 aa5.79□□□□□ -1.48
LIG3-210ENST00000588109 CSGALNACT2Q8N6G5 542 aa5.79□□□□□ -1.48
LIG3-210ENST00000588109 ANKRD20A12PQ8NF67 263 aa5.79□□□□□ -1.48
LIG3-210ENST00000588109 CAGE1Q8TC20 777 aa5.79□□□□□ -1.48
LIG3-210ENST00000588109 ENOX1Q8TC92 643 aaKnown RBP5.79□□□□□ -1.48
LIG3-210ENST00000588109 POMGNT1Q8WZA1 660 aa5.79□□□□□ -1.48
LIG3-210ENST00000588109 WNT8BQ93098 351 aa5.79□□□□□ -1.48
LIG3-210ENST00000588109 TCHPQ9BT92 498 aa5.79□□□□□ -1.48
LIG3-210ENST00000588109 TARS2Q9BW92 718 aaKnown RBP5.79□□□□□ -1.48
LIG3-210ENST00000588109 STRA6Q9BX79 667 aa5.79□□□□□ -1.48
LIG3-210ENST00000588109 NFKBIZQ9BYH8 718 aa5.79□□□□□ -1.48
LIG3-210ENST00000588109 CELF4Q9BZC1 486 aaKnown RBP5.79□□□□□ -1.48
LIG3-210ENST00000588109 CCDC113Q9H0I3 377 aa5.79□□□□□ -1.48
LIG3-210ENST00000588109 ADAMTS10Q9H324 1103 aa5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms