RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 GOLGA8JA6NMD2 632 aa11.79□□□□□ -0.52
CLIP3-203ENST00000586457 TISP43B9A030 160 aa11.79□□□□□ -0.52
CLIP3-203ENST00000586457 PRRG1O14668 218 aa11.79□□□□□ -0.52
CLIP3-203ENST00000586457 EXTL3O43909 919 aa11.79□□□□□ -0.52
CLIP3-203ENST00000586457 XYLBO75191 536 aa11.79□□□□□ -0.52
CLIP3-203ENST00000586457 PPP1R37O75864 691 aa11.79□□□□□ -0.52
CLIP3-203ENST00000586457 CLSTN1O94985 981 aa11.79□□□□□ -0.52
CLIP3-203ENST00000586457 EFEMP2O95967 443 aa11.79□□□□□ -0.52
CLIP3-203ENST00000586457 ODC1P11926 461 aa11.79□□□□□ -0.52
CLIP3-203ENST00000586457 CASP5P51878 434 aa11.79□□□□□ -0.52
CLIP3-203ENST00000586457 SNRPFP62306 86 aaKnown RBP11.79□□□□□ -0.52
CLIP3-203ENST00000586457 YWHAHQ04917 246 aaPredicted RBP11.79□□□□□ -0.52
CLIP3-203ENST00000586457 VARS2Q5ST30 1063 aaKnown RBP11.79□□□□□ -0.52
CLIP3-203ENST00000586457 SPATA1Q5VX52 437 aa11.79□□□□□ -0.52
CLIP3-203ENST00000586457 ZNF280DQ6N043 979 aa11.79□□□□□ -0.52
CLIP3-203ENST00000586457 CNNM4Q6P4Q7 775 aa11.79□□□□□ -0.52
CLIP3-203ENST00000586457 C15orf39Q6ZRI6 1047 aa11.79□□□□□ -0.52
CLIP3-203ENST00000586457 OTOP3Q7RTS5 596 aa11.79□□□□□ -0.52
CLIP3-203ENST00000586457 GPR149Q86SP6 731 aa11.79□□□□□ -0.52
CLIP3-203ENST00000586457 NELFCDQ8IXH7 590 aa11.79□□□□□ -0.52
CLIP3-203ENST00000586457 GPD1LQ8N335 351 aa11.79□□□□□ -0.52
CLIP3-203ENST00000586457 TDRD5Q8NAT2 981 aaKnown RBP11.79□□□□□ -0.52
CLIP3-203ENST00000586457 GOLGA5Q8TBA6 731 aa11.79□□□□□ -0.52
CLIP3-203ENST00000586457 ZNF507Q8TCN5 953 aa11.79□□□□□ -0.52
CLIP3-203ENST00000586457 SUSD6Q92537 303 aa11.79□□□□□ -0.52
CLIP3-203ENST00000586457 SMG7Q92540 1137 aaKnown RBP11.79□□□□□ -0.52
CLIP3-203ENST00000586457 CLSTN3Q9BQT9 956 aa11.79□□□□□ -0.52
CLIP3-203ENST00000586457 STRA6Q9BX79 667 aa11.79□□□□□ -0.52
CLIP3-203ENST00000586457 OXCT2Q9BYC2 517 aaPredicted RBP11.79□□□□□ -0.52
CLIP3-203ENST00000586457 GDPD2Q9HCC8 539 aa11.79□□□□□ -0.52
CLIP3-203ENST00000586457 ZDHHC7Q9NXF8 308 aa11.79□□□□□ -0.52
CLIP3-203ENST00000586457 CGNQ9P2M7 1197 aaKnown RBP11.79□□□□□ -0.52
CLIP3-203ENST00000586457 C2CD2Q9Y426 696 aa11.79□□□□□ -0.52
CLIP3-203ENST00000586457 BACE2Q9Y5Z0 518 aa11.79□□□□□ -0.52
CLIP3-203ENST00000586457 ATG2AQ2TAZ0 1938 aa11.78□□□□□ -0.52
CLIP3-203ENST00000586457 C19orf67A6NJJ6 358 aa11.78□□□□□ -0.52
CLIP3-203ENST00000586457 DCXO43602 365 aa11.78□□□□□ -0.52
CLIP3-203ENST00000586457 TNNC2P02585 160 aa11.78□□□□□ -0.52
CLIP3-203ENST00000586457 NFICP08651 508 aa11.78□□□□□ -0.52
CLIP3-203ENST00000586457 KRT19P08727 400 aa11.78□□□□□ -0.52
CLIP3-203ENST00000586457 TMEM191BP0C7N4 346 aa11.78□□□□□ -0.52
CLIP3-203ENST00000586457 CPB1P15086 417 aa11.78□□□□□ -0.52
CLIP3-203ENST00000586457 CASP1P29466 404 aa11.78□□□□□ -0.52
CLIP3-203ENST00000586457 ADSSP30520 456 aa11.78□□□□□ -0.52
CLIP3-203ENST00000586457 LRPAP1P30533 357 aa11.78□□□□□ -0.52
CLIP3-203ENST00000586457 NDUFA8P51970 172 aa11.78□□□□□ -0.52
CLIP3-203ENST00000586457 RAB33AQ14088 237 aa11.78□□□□□ -0.52
CLIP3-203ENST00000586457 ZBTB6Q15916 424 aa11.78□□□□□ -0.52
CLIP3-203ENST00000586457 UVSSAQ2YD98 709 aa11.78□□□□□ -0.52
CLIP3-203ENST00000586457 RNF135Q8IUD6 432 aa11.78□□□□□ -0.52
CLIP3-203ENST00000586457 GRAMD1CQ8IYS0 662 aa11.78□□□□□ -0.52
CLIP3-203ENST00000586457 THEM5Q8N1Q8 247 aa11.78□□□□□ -0.52
CLIP3-203ENST00000586457 ELMOD1Q8N336 334 aa11.78□□□□□ -0.52
CLIP3-203ENST00000586457 RDH13Q8NBN7 331 aa11.78□□□□□ -0.52
CLIP3-203ENST00000586457 C3orf58Q8NDZ4 430 aa11.78□□□□□ -0.52
CLIP3-203ENST00000586457 ANKRD36BP1Q96IX9 119 aa11.78□□□□□ -0.52
CLIP3-203ENST00000586457 SUSD3Q96L08 255 aa11.78□□□□□ -0.52
CLIP3-203ENST00000586457 FNBP1Q96RU3 617 aa11.78□□□□□ -0.52
CLIP3-203ENST00000586457 MTRRQ9UBK8 725 aa11.78□□□□□ -0.52
CLIP3-203ENST00000586457 DSEQ9UL01 958 aa11.78□□□□□ -0.52
CLIP3-203ENST00000586457 PCDHB8Q9UN66 801 aa11.78□□□□□ -0.52
CLIP3-203ENST00000586457 UBE4BO95155 1302 aa11.78□□□□□ -0.52
CLIP3-203ENST00000586457 CITO14578 2027 aa11.77□□□□□ -0.52
CLIP3-203ENST00000586457 LOC730098B7Z3J9 87 aa11.77□□□□□ -0.53
CLIP3-203ENST00000586457 FAM189A1O60320 539 aa11.77□□□□□ -0.53
CLIP3-203ENST00000586457 RFPL2O75678 378 aa11.77□□□□□ -0.53
CLIP3-203ENST00000586457 ZMYND10O75800 440 aa11.77□□□□□ -0.53
CLIP3-203ENST00000586457 ZNF202O95125 648 aa11.77□□□□□ -0.53
CLIP3-203ENST00000586457 LRG1P02750 347 aa11.77□□□□□ -0.53
CLIP3-203ENST00000586457 RPN1P04843 607 aaKnown RBP11.77□□□□□ -0.53
CLIP3-203ENST00000586457 C8AP07357 584 aa11.77□□□□□ -0.53
CLIP3-203ENST00000586457 ADRB2P07550 413 aa11.77□□□□□ -0.53
CLIP3-203ENST00000586457 HNRNPA1P09651 372 aaKnown RBP eCLIP11.77□□□□□ -0.53
CLIP3-203ENST00000586457 GBP2P32456 591 aaPredicted RBP11.77□□□□□ -0.53
CLIP3-203ENST00000586457 PNPLA4P41247 253 aa11.77□□□□□ -0.53
CLIP3-203ENST00000586457 TAF6P49848 677 aa11.77□□□□□ -0.53
CLIP3-203ENST00000586457 CYP2J2P51589 502 aa11.77□□□□□ -0.53
CLIP3-203ENST00000586457 KNOP1Q1ED39 458 aaKnown RBP11.77□□□□□ -0.53
CLIP3-203ENST00000586457 SV2CQ496J9 727 aa11.77□□□□□ -0.53
CLIP3-203ENST00000586457 C9orf57Q5W0N0 161 aa11.77□□□□□ -0.53
CLIP3-203ENST00000586457 LILRA6Q6PI73 481 aa11.77□□□□□ -0.53
CLIP3-203ENST00000586457 RTL10Q7L3V2 364 aa11.77□□□□□ -0.53
CLIP3-203ENST00000586457 CSGALNACT2Q8N6G5 542 aa11.77□□□□□ -0.53
CLIP3-203ENST00000586457 CMASQ8NFW8 434 aaPredicted RBP11.77□□□□□ -0.53
CLIP3-203ENST00000586457 ZNF461Q8TAF7 563 aa11.77□□□□□ -0.53
CLIP3-203ENST00000586457 SLC7A14Q8TBB6 771 aa11.77□□□□□ -0.53
CLIP3-203ENST00000586457 CHAMP1Q96JM3 812 aa11.77□□□□□ -0.53
CLIP3-203ENST00000586457 ZNF560Q96MR9 790 aa11.77□□□□□ -0.53
CLIP3-203ENST00000586457 CBWD1Q9BRT8 395 aa11.77□□□□□ -0.53
CLIP3-203ENST00000586457 PRKD2Q9BZL6 878 aa11.77□□□□□ -0.53
CLIP3-203ENST00000586457 IKZF4Q9H2S9 585 aa11.77□□□□□ -0.53
CLIP3-203ENST00000586457 POMKQ9H5K3 350 aa11.77□□□□□ -0.53
CLIP3-203ENST00000586457 CYP4F11Q9HBI6 524 aa11.77□□□□□ -0.53
CLIP3-203ENST00000586457 CD320Q9NPF0 282 aa11.77□□□□□ -0.53
CLIP3-203ENST00000586457 HSPBP1Q9NZL4 362 aa11.77□□□□□ -0.53
CLIP3-203ENST00000586457 BRWD1Q9NSI6 2320 aa11.76□□□□□ -0.53
CLIP3-203ENST00000586457 PI4K2BG5E9Z4 385 aa11.76□□□□□ -0.53
CLIP3-203ENST00000586457 CYB561D2O14569 222 aa11.76□□□□□ -0.53
CLIP3-203ENST00000586457 CLIC2O15247 247 aa11.76□□□□□ -0.53
CLIP3-203ENST00000586457 ACTN4O43707 911 aaKnown RBP11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms