RNA–Protein interactions for RNA: ENST00000585466.1

CLIP3-202, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 2

Gene CLIP3, Length 368 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-202ENST00000585466 DPP7Q9UHL4 492 aa16.49■□□□□ 0.23
CLIP3-202ENST00000585466 AGO2Q9UKV8 859 aaKnown RBP16.49■□□□□ 0.23
CLIP3-202ENST00000585466 CDY1Q9Y6F8 540 aa16.49■□□□□ 0.23
CLIP3-202ENST00000585466 CLUHO75153 1309 aa16.48■□□□□ 0.23
CLIP3-202ENST00000585466 ANO9A1A5B4 782 aa16.48■□□□□ 0.23
CLIP3-202ENST00000585466 WDR27A2RRH5 827 aa16.48■□□□□ 0.23
CLIP3-202ENST00000585466 ABLIM3O94929 683 aa16.48■□□□□ 0.23
CLIP3-202ENST00000585466 GCNT3O95395 438 aa16.48■□□□□ 0.23
CLIP3-202ENST00000585466 CASP1P29466 404 aa16.48■□□□□ 0.23
CLIP3-202ENST00000585466 POU5F1Q01860 360 aaKnown RBP16.48■□□□□ 0.23
CLIP3-202ENST00000585466 ROR1Q01973 937 aa16.48■□□□□ 0.23
CLIP3-202ENST00000585466 CCDC149Q6ZUS6 474 aa16.48■□□□□ 0.23
CLIP3-202ENST00000585466 HFE2Q6ZVN8 426 aa16.48■□□□□ 0.23
CLIP3-202ENST00000585466 EPM2AIP1Q7L775 607 aaPredicted RBP16.48■□□□□ 0.23
CLIP3-202ENST00000585466 CD302Q8IX05 232 aa16.48■□□□□ 0.23
CLIP3-202ENST00000585466 EFCAB13Q8IY85 973 aa16.48■□□□□ 0.23
CLIP3-202ENST00000585466 IQUBQ8NA54 791 aa16.48■□□□□ 0.23
CLIP3-202ENST00000585466 TDRD5Q8NAT2 981 aaKnown RBP16.48■□□□□ 0.23
CLIP3-202ENST00000585466 LEO1Q8WVC0 666 aaPredicted RBP16.48■□□□□ 0.23
CLIP3-202ENST00000585466 ASIC4Q96FT7 647 aa16.48■□□□□ 0.23
CLIP3-202ENST00000585466 ACCSQ96QU6 501 aa16.48■□□□□ 0.23
CLIP3-202ENST00000585466 SMOC2Q9H3U7 446 aa16.48■□□□□ 0.23
CLIP3-202ENST00000585466 SPDYE4A6NLX3 237 aa16.47■□□□□ 0.23
CLIP3-202ENST00000585466 PIRO00625 290 aa16.47■□□□□ 0.23
CLIP3-202ENST00000585466 SPTLC1O15269 473 aa16.47■□□□□ 0.23
CLIP3-202ENST00000585466 POLR2DO15514 142 aaKnown RBP16.47■□□□□ 0.23
CLIP3-202ENST00000585466 PRPF6O94906 941 aaKnown RBP16.47■□□□□ 0.23
CLIP3-202ENST00000585466 ASGR2P07307 311 aa16.47■□□□□ 0.23
CLIP3-202ENST00000585466 C8AP07357 584 aa16.47■□□□□ 0.23
CLIP3-202ENST00000585466 POU2F2P09086 479 aa16.47■□□□□ 0.23
CLIP3-202ENST00000585466 HOXA9P31269 272 aa16.47■□□□□ 0.23
CLIP3-202ENST00000585466 ME1P48163 572 aa16.47■□□□□ 0.23
CLIP3-202ENST00000585466 ALCAMQ13740 583 aa16.47■□□□□ 0.23
CLIP3-202ENST00000585466 TRIM67Q6ZTA4 783 aa16.47■□□□□ 0.23
CLIP3-202ENST00000585466 POMGNT1Q8WZA1 660 aa16.47■□□□□ 0.23
CLIP3-202ENST00000585466 MYADMQ96S97 322 aa16.47■□□□□ 0.23
CLIP3-202ENST00000585466 CBWD1Q9BRT8 395 aa16.47■□□□□ 0.23
CLIP3-202ENST00000585466 ASB7Q9H672 318 aa16.47■□□□□ 0.23
CLIP3-202ENST00000585466 FBXL5Q9UKA1 691 aa16.47■□□□□ 0.23
CLIP3-202ENST00000585466 CFAP45Q9UL16 551 aa16.47■□□□□ 0.23
CLIP3-202ENST00000585466 PCDHB8Q9UN66 801 aa16.47■□□□□ 0.23
CLIP3-202ENST00000585466 DERAQ9Y315 318 aa16.47■□□□□ 0.23
CLIP3-202ENST00000585466 C2CD2Q9Y426 696 aa16.47■□□□□ 0.23
CLIP3-202ENST00000585466 NUB1Q9Y5A7 615 aa16.47■□□□□ 0.23
CLIP3-202ENST00000585466 PCDHB13Q9Y5F0 798 aa16.47■□□□□ 0.23
CLIP3-202ENST00000585466 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.47■□□□□ 0.23
CLIP3-202ENST00000585466 KMT2EQ8IZD2 1858 aa16.47■□□□□ 0.23
CLIP3-202ENST00000585466 ACTN4O43707 911 aaKnown RBP16.46■□□□□ 0.23
CLIP3-202ENST00000585466 VNN2O95498 520 aa16.46■□□□□ 0.23
CLIP3-202ENST00000585466 HNRNPA1P09651 372 aaKnown RBP eCLIP16.46■□□□□ 0.23
CLIP3-202ENST00000585466 MCM4P33991 863 aa16.46■□□□□ 0.23
CLIP3-202ENST00000585466 POSTNQ15063 836 aa16.46■□□□□ 0.23
CLIP3-202ENST00000585466 C9orf57Q5W0N0 161 aa16.46■□□□□ 0.23
CLIP3-202ENST00000585466 SCARA3Q6AZY7 606 aa16.46■□□□□ 0.23
CLIP3-202ENST00000585466 ELMSAN1Q6PJG2 1045 aa16.46■□□□□ 0.23
CLIP3-202ENST00000585466 CCDC65Q8IXS2 484 aa16.46■□□□□ 0.23
CLIP3-202ENST00000585466 CXorf38Q8TB03 319 aa16.46■□□□□ 0.23
CLIP3-202ENST00000585466 SLC7A14Q8TBB6 771 aa16.46■□□□□ 0.23
CLIP3-202ENST00000585466 SAAL1Q96ER3 474 aa16.46■□□□□ 0.23
CLIP3-202ENST00000585466 MAGEF1Q9HAY2 307 aa16.46■□□□□ 0.23
CLIP3-202ENST00000585466 LIMD1Q9UGP4 676 aa16.46■□□□□ 0.23
CLIP3-202ENST00000585466 EXOC7Q9UPT5 735 aa16.46■□□□□ 0.23
CLIP3-202ENST00000585466 TMEM221A6NGB7 291 aa16.45■□□□□ 0.22
CLIP3-202ENST00000585466 M0R296 226 aa16.45■□□□□ 0.22
CLIP3-202ENST00000585466 OAZ2O95190 189 aa16.45■□□□□ 0.22
CLIP3-202ENST00000585466 SEC24AO95486 1093 aa16.45■□□□□ 0.22
CLIP3-202ENST00000585466 GARTP22102 1010 aa16.45■□□□□ 0.22
CLIP3-202ENST00000585466 LILRA4P59901 499 aa16.45■□□□□ 0.22
CLIP3-202ENST00000585466 NTHL1P78549 312 aa16.45■□□□□ 0.22
CLIP3-202ENST00000585466 SIGLEC14Q08ET2 396 aa16.45■□□□□ 0.22
CLIP3-202ENST00000585466 TMEM132DQ14C87 1099 aa16.45■□□□□ 0.22
CLIP3-202ENST00000585466 OTOP3Q7RTS5 596 aa16.45■□□□□ 0.22
CLIP3-202ENST00000585466 BMP8AQ7Z5Y6 402 aa16.45■□□□□ 0.22
CLIP3-202ENST00000585466 BRSK2Q8IWQ3 736 aa16.45■□□□□ 0.22
CLIP3-202ENST00000585466 GRAMD1CQ8IYS0 662 aa16.45■□□□□ 0.22
CLIP3-202ENST00000585466 BEST2Q8NFU1 509 aa16.45■□□□□ 0.22
CLIP3-202ENST00000585466 ZNF461Q8TAF7 563 aa16.45■□□□□ 0.22
CLIP3-202ENST00000585466 FAM212AQ96EL1 285 aa16.45■□□□□ 0.22
CLIP3-202ENST00000585466 FAM84AQ96KN4 292 aa16.45■□□□□ 0.22
CLIP3-202ENST00000585466 BLZF1Q9H2G9 400 aa16.45■□□□□ 0.22
CLIP3-202ENST00000585466 EPS15L1Q9UBC2 864 aa16.45■□□□□ 0.22
CLIP3-202ENST00000585466 KCNH3Q9ULD8 1083 aa16.45■□□□□ 0.22
CLIP3-202ENST00000585466 SORCS3Q9UPU3 1222 aa16.45■□□□□ 0.22
CLIP3-202ENST00000585466 HPSEQ9Y251 543 aa16.45■□□□□ 0.22
CLIP3-202ENST00000585466 FAM237AA0A1B0GTK4 181 aa16.44■□□□□ 0.22
CLIP3-202ENST00000585466 ARHGEF37A1IGU5 675 aa16.44■□□□□ 0.22
CLIP3-202ENST00000585466 EIF3DO15371 548 aaKnown RBP eCLIP16.44■□□□□ 0.22
CLIP3-202ENST00000585466 CCL16O15467 120 aa16.44■□□□□ 0.22
CLIP3-202ENST00000585466 KLRC4O43908 158 aa16.44■□□□□ 0.22
CLIP3-202ENST00000585466 ASIC1P78348 528 aa16.44■□□□□ 0.22
CLIP3-202ENST00000585466 CUL4BQ13620 913 aa16.44■□□□□ 0.22
CLIP3-202ENST00000585466 UVSSAQ2YD98 709 aa16.44■□□□□ 0.22
CLIP3-202ENST00000585466 FAM26FQ5R3K3 315 aa16.44■□□□□ 0.22
CLIP3-202ENST00000585466 PPM1LQ5SGD2 360 aa16.44■□□□□ 0.22
CLIP3-202ENST00000585466 POTEHQ6S545 545 aa16.44■□□□□ 0.22
CLIP3-202ENST00000585466 UNC13DQ70J99 1090 aa16.44■□□□□ 0.22
CLIP3-202ENST00000585466 PLCD3Q8N3E9 789 aa16.44■□□□□ 0.22
CLIP3-202ENST00000585466 ZNF507Q8TCN5 953 aa16.44■□□□□ 0.22
CLIP3-202ENST00000585466 BORCS6Q96GS4 357 aa16.44■□□□□ 0.22
CLIP3-202ENST00000585466 FAM213AQ9BRX8 229 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms