RNA–Protein interactions for RNA: ENST00000580095.5

TOP3A-209, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 1 (best)

Gene TOP3A, Length 2,929 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-209ENST00000580095 SCYL3Q8IZE3 742 aa11.17□□□□□ -0.62
TOP3A-209ENST00000580095 ANKRD42Q8N9B4 389 aa11.17□□□□□ -0.62
TOP3A-209ENST00000580095 GLIS1Q8NBF1 620 aa11.17□□□□□ -0.62
TOP3A-209ENST00000580095 MCPH1Q8NEM0 835 aa11.17□□□□□ -0.62
TOP3A-209ENST00000580095 DEPTORQ8TB45 409 aa11.17□□□□□ -0.62
TOP3A-209ENST00000580095 MRRFQ96E11 262 aaKnown RBP11.17□□□□□ -0.62
TOP3A-209ENST00000580095 TCHPQ9BT92 498 aa11.17□□□□□ -0.62
TOP3A-209ENST00000580095 MSTO1Q9BUK6 570 aa11.17□□□□□ -0.62
TOP3A-209ENST00000580095 TIPINQ9BVW5 301 aa11.17□□□□□ -0.62
TOP3A-209ENST00000580095 ADAM22Q9P0K1 906 aa11.17□□□□□ -0.62
TOP3A-209ENST00000580095 DOCK5Q9H7D0 1870 aa11.17□□□□□ -0.62
TOP3A-209ENST00000580095 THAP12O43422 761 aa11.16□□□□□ -0.62
TOP3A-209ENST00000580095 EXTL3O43909 919 aa11.16□□□□□ -0.62
TOP3A-209ENST00000580095 CST3P01034 146 aaPredicted RBP11.16□□□□□ -0.62
TOP3A-209ENST00000580095 GJB1P08034 283 aa11.16□□□□□ -0.62
TOP3A-209ENST00000580095 ZSCAN5DPP0CG00 497 aa11.16□□□□□ -0.62
TOP3A-209ENST00000580095 GCNT1Q02742 428 aa11.16□□□□□ -0.62
TOP3A-209ENST00000580095 ZACNQ401N2 412 aa11.16□□□□□ -0.62
TOP3A-209ENST00000580095 ERMARDQ5T6L9 678 aa11.16□□□□□ -0.62
TOP3A-209ENST00000580095 SCARA5Q6ZMJ2 495 aa11.16□□□□□ -0.62
TOP3A-209ENST00000580095 TRIM50Q86XT4 487 aa11.16□□□□□ -0.62
TOP3A-209ENST00000580095 CACNA2D3Q8IZS8 1091 aa11.16□□□□□ -0.62
TOP3A-209ENST00000580095 CHMP6Q96FZ7 201 aa11.16□□□□□ -0.62
TOP3A-209ENST00000580095 DDX27Q96GQ7 796 aaKnown RBP11.16□□□□□ -0.62
TOP3A-209ENST00000580095 C9orf72Q96LT7 481 aa11.16□□□□□ -0.62
TOP3A-209ENST00000580095 ELAC2Q9BQ52 826 aaKnown RBP11.16□□□□□ -0.62
TOP3A-209ENST00000580095 PRDM16Q9HAZ2 1276 aa11.16□□□□□ -0.62
TOP3A-209ENST00000580095 INTS9Q9NV88 658 aaKnown RBP11.16□□□□□ -0.62
TOP3A-209ENST00000580095 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.16□□□□□ -0.62
TOP3A-209ENST00000580095 PCDHB2Q9Y5E7 798 aa11.16□□□□□ -0.62
TOP3A-209ENST00000580095 DNAH12Q6ZR08 3092 aa11.16□□□□□ -0.62
TOP3A-209ENST00000580095 CEP350Q5VT06 3117 aa11.16□□□□□ -0.62
TOP3A-209ENST00000580095 FSCN2O14926 492 aa11.16□□□□□ -0.62
TOP3A-209ENST00000580095 PIAS1O75925 651 aa11.16□□□□□ -0.62
TOP3A-209ENST00000580095 C4BPAP04003 597 aaKnown RBP11.16□□□□□ -0.62
TOP3A-209ENST00000580095 HSPA6P17066 643 aa11.16□□□□□ -0.62
TOP3A-209ENST00000580095 GNA15P30679 374 aa11.16□□□□□ -0.62
TOP3A-209ENST00000580095 CYP1B1Q16678 543 aa11.16□□□□□ -0.62
TOP3A-209ENST00000580095 C6orf89Q6UWU4 347 aa11.16□□□□□ -0.62
TOP3A-209ENST00000580095 MICALCLQ6ZW33 695 aa11.16□□□□□ -0.62
TOP3A-209ENST00000580095 ANKRD35Q8N283 1001 aa11.16□□□□□ -0.62
TOP3A-209ENST00000580095 GDAP1Q8TB36 358 aa11.16□□□□□ -0.62
TOP3A-209ENST00000580095 TRPM4Q8TD43 1214 aa11.16□□□□□ -0.62
TOP3A-209ENST00000580095 C10orf88Q9H8K7 445 aa11.16□□□□□ -0.62
TOP3A-209ENST00000580095 PMM2O15305 246 aa11.15□□□□□ -0.62
TOP3A-209ENST00000580095 GH1P01241 217 aa11.15□□□□□ -0.62
TOP3A-209ENST00000580095 SUPT20HL2P0C7V6 817 aa11.15□□□□□ -0.62
TOP3A-209ENST00000580095 SRGAP2CP0DJJ0 459 aa11.15□□□□□ -0.62
TOP3A-209ENST00000580095 RARGP13631 454 aa11.15□□□□□ -0.62
TOP3A-209ENST00000580095 ETS1P14921 441 aa11.15□□□□□ -0.62
TOP3A-209ENST00000580095 ACO1P21399 889 aaKnown RBP11.15□□□□□ -0.62
TOP3A-209ENST00000580095 ORC1Q13415 861 aa11.15□□□□□ -0.62
TOP3A-209ENST00000580095 MAMLD1Q13495 774 aa11.15□□□□□ -0.62
TOP3A-209ENST00000580095 CUL2Q13617 745 aa11.15□□□□□ -0.62
TOP3A-209ENST00000580095 TCEAL1Q15170 157 aa11.15□□□□□ -0.62
TOP3A-209ENST00000580095 SUPT20HL1Q3ZLR7 823 aa11.15□□□□□ -0.62
TOP3A-209ENST00000580095 GKAP1Q5VSY0 366 aaPredicted RBP11.15□□□□□ -0.62
TOP3A-209ENST00000580095 TXNRD3NBQ6F5E7 133 aa11.15□□□□□ -0.62
TOP3A-209ENST00000580095 CYP4F22Q6NT55 531 aa11.15□□□□□ -0.62
TOP3A-209ENST00000580095 C15orf39Q6ZRI6 1047 aa11.15□□□□□ -0.62
TOP3A-209ENST00000580095 USP37Q86T82 979 aa11.15□□□□□ -0.62
TOP3A-209ENST00000580095 SUGP1Q8IWZ8 645 aaKnown RBP11.15□□□□□ -0.62
TOP3A-209ENST00000580095 RBBP8NLQ8NC74 664 aaPredicted RBP11.15□□□□□ -0.62
TOP3A-209ENST00000580095 TMEM174Q8WUU8 243 aa11.15□□□□□ -0.62
TOP3A-209ENST00000580095 ATXN2LQ8WWM7 1075 aaKnown RBP11.15□□□□□ -0.62
TOP3A-209ENST00000580095 VTI1AQ96AJ9 217 aa11.15□□□□□ -0.62
TOP3A-209ENST00000580095 TEX13BQ9BXU2 312 aa11.15□□□□□ -0.62
TOP3A-209ENST00000580095 FAM129AQ9BZQ8 928 aa11.15□□□□□ -0.62
TOP3A-209ENST00000580095 LRRC19Q9H756 370 aa11.15□□□□□ -0.62
TOP3A-209ENST00000580095 KCNK9Q9NPC2 374 aa11.15□□□□□ -0.62
TOP3A-209ENST00000580095 ZNF302Q9NR11 478 aa11.15□□□□□ -0.62
TOP3A-209ENST00000580095 KLHL33A6NCF5 533 aa11.15□□□□□ -0.62
TOP3A-209ENST00000580095 WEE2P0C1S8 567 aa11.15□□□□□ -0.62
TOP3A-209ENST00000580095 ATF7P17544 494 aaPredicted RBP11.15□□□□□ -0.62
TOP3A-209ENST00000580095 GARTP22102 1010 aa11.15□□□□□ -0.62
TOP3A-209ENST00000580095 IVDP26440 423 aa11.15□□□□□ -0.62
TOP3A-209ENST00000580095 MMP13P45452 471 aa11.15□□□□□ -0.62
TOP3A-209ENST00000580095 ZNF280AP59817 542 aaPredicted RBP11.15□□□□□ -0.62
TOP3A-209ENST00000580095 SNRPFP62306 86 aaKnown RBP11.15□□□□□ -0.62
TOP3A-209ENST00000580095 NOP14P78316 857 aaKnown RBP11.15□□□□□ -0.62
TOP3A-209ENST00000580095 XKR3Q5GH77 459 aa11.15□□□□□ -0.62
TOP3A-209ENST00000580095 MIS18BP1Q6P0N0 1132 aa11.15□□□□□ -0.62
TOP3A-209ENST00000580095 MON1BQ7L1V2 547 aa11.15□□□□□ -0.62
TOP3A-209ENST00000580095 GSTA5Q7RTV2 222 aa11.15□□□□□ -0.62
TOP3A-209ENST00000580095 EXOC3L1Q86VI1 746 aa11.15□□□□□ -0.62
TOP3A-209ENST00000580095 CYP4X1Q8N118 509 aa11.15□□□□□ -0.62
TOP3A-209ENST00000580095 LRRC71Q8N4P6 559 aa11.15□□□□□ -0.62
TOP3A-209ENST00000580095 PGM2Q96G03 612 aa11.15□□□□□ -0.62
TOP3A-209ENST00000580095 DCLK3Q9C098 648 aa11.15□□□□□ -0.62
TOP3A-209ENST00000580095 ACAD9Q9H845 621 aa11.15□□□□□ -0.62
TOP3A-209ENST00000580095 SPDYE16A6NNV3 312 aaPredicted RBP11.15□□□□□ -0.63
TOP3A-209ENST00000580095 TLR3O15455 904 aaKnown RBP11.15□□□□□ -0.63
TOP3A-209ENST00000580095 CSDE1O75534 798 aaKnown RBP11.15□□□□□ -0.63
TOP3A-209ENST00000580095 GGPS1O95749 300 aa11.15□□□□□ -0.63
TOP3A-209ENST00000580095 CPP00450 1065 aa11.15□□□□□ -0.63
TOP3A-209ENST00000580095 CETPP11597 493 aa11.15□□□□□ -0.63
TOP3A-209ENST00000580095 PSMD6Q15008 389 aa11.15□□□□□ -0.63
TOP3A-209ENST00000580095 ZKSCAN8Q15776 578 aaPredicted RBP11.15□□□□□ -0.63
TOP3A-209ENST00000580095 CYP4A22Q5TCH4 519 aa11.15□□□□□ -0.63
TOP3A-209ENST00000580095 SLC17A8Q8NDX2 589 aa11.15□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms