RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 TFAMQ00059 246 aaKnown RBP21.12■□□□□ 0.97
SS18-209ENST00000578595 EHHADHQ08426 723 aa21.12■□□□□ 0.97
SS18-209ENST00000578595 KANK3Q6NY19 840 aa21.12■□□□□ 0.97
SS18-209ENST00000578595 CRELD2Q6UXH1 353 aaPredicted RBP21.12■□□□□ 0.97
SS18-209ENST00000578595 EPM2AIP1Q7L775 607 aaPredicted RBP21.12■□□□□ 0.97
SS18-209ENST00000578595 BRSK2Q8IWQ3 736 aa21.12■□□□□ 0.97
SS18-209ENST00000578595 LNX1Q8TBB1 728 aaPredicted RBP21.12■□□□□ 0.97
SS18-209ENST00000578595 POP1Q99575 1024 aaKnown RBP21.12■□□□□ 0.97
SS18-209ENST00000578595 HSPBP1Q9NZL4 362 aa21.12■□□□□ 0.97
SS18-209ENST00000578595 CDH22Q9UJ99 828 aa21.12■□□□□ 0.97
SS18-209ENST00000578595 DERAQ9Y315 318 aa21.12■□□□□ 0.97
SS18-209ENST00000578595 DENND4AQ7Z401 1863 aa21.11■□□□□ 0.97
SS18-209ENST00000578595 KIAA0391O15091 583 aaKnown RBP21.11■□□□□ 0.97
SS18-209ENST00000578595 LRPAP1P30533 357 aa21.11■□□□□ 0.97
SS18-209ENST00000578595 ARPP19P56211 112 aa21.11■□□□□ 0.97
SS18-209ENST00000578595 ITIH3Q06033 890 aa21.11■□□□□ 0.97
SS18-209ENST00000578595 PSMD2Q13200 908 aa21.11■□□□□ 0.97
SS18-209ENST00000578595 CBX2Q14781 532 aaPredicted RBP21.11■□□□□ 0.97
SS18-209ENST00000578595 SPATA1Q5VX52 437 aa21.11■□□□□ 0.97
SS18-209ENST00000578595 CD300LGQ6UXG3 332 aa21.11■□□□□ 0.97
SS18-209ENST00000578595 ANKS3Q6ZW76 656 aa21.11■□□□□ 0.97
SS18-209ENST00000578595 GPR65Q8IYL9 337 aa21.11■□□□□ 0.97
SS18-209ENST00000578595 TSHZ2Q9NRE2 1034 aa21.11■□□□□ 0.97
SS18-209ENST00000578595 AGPAT3Q9NRZ7 376 aa21.11■□□□□ 0.97
SS18-209ENST00000578595 DPP3Q9NY33 737 aa21.11■□□□□ 0.97
SS18-209ENST00000578595 C2CD2Q9Y426 696 aa21.11■□□□□ 0.97
SS18-209ENST00000578595 CDY1Q9Y6F8 540 aa21.11■□□□□ 0.97
SS18-209ENST00000578595 DOCK6Q96HP0 2047 aa21.11■□□□□ 0.97
SS18-209ENST00000578595 ZNF233A6NK53 670 aa21.1■□□□□ 0.97
SS18-209ENST00000578595 SYN3O14994 580 aa21.1■□□□□ 0.97
SS18-209ENST00000578595 TGM5O43548 720 aa21.1■□□□□ 0.97
SS18-209ENST00000578595 OR1D2P34982 312 aa21.1■□□□□ 0.97
SS18-209ENST00000578595 HOXD13P35453 343 aa21.1■□□□□ 0.97
SS18-209ENST00000578595 STK4Q13043 487 aa21.1■□□□□ 0.97
SS18-209ENST00000578595 ZBTB6Q15916 424 aa21.1■□□□□ 0.97
SS18-209ENST00000578595 KNOP1Q1ED39 458 aaKnown RBP21.1■□□□□ 0.97
SS18-209ENST00000578595 VARS2Q5ST30 1063 aaKnown RBP21.1■□□□□ 0.97
SS18-209ENST00000578595 LIN9Q5TKA1 542 aa21.1■□□□□ 0.97
SS18-209ENST00000578595 ADHFE1Q8IWW8 467 aa21.1■□□□□ 0.97
SS18-209ENST00000578595 EFCAB13Q8IY85 973 aa21.1■□□□□ 0.97
SS18-209ENST00000578595 RDH13Q8NBN7 331 aa21.1■□□□□ 0.97
SS18-209ENST00000578595 RPGRIP1Q96KN7 1286 aa21.1■□□□□ 0.97
SS18-209ENST00000578595 SUSD3Q96L08 255 aa21.1■□□□□ 0.97
SS18-209ENST00000578595 RIPOR3Q96MK2 946 aa21.1■□□□□ 0.97
SS18-209ENST00000578595 CLSTN3Q9BQT9 956 aa21.1■□□□□ 0.97
SS18-209ENST00000578595 MTRRQ9UBK8 725 aa21.1■□□□□ 0.97
SS18-209ENST00000578595 PRKAG3Q9UGI9 489 aa21.1■□□□□ 0.97
SS18-209ENST00000578595 R3HCC1Q9Y3T6 440 aaKnown RBP21.1■□□□□ 0.97
SS18-209ENST00000578595 VCANP13611 3396 aa21.1■□□□□ 0.97
SS18-209ENST00000578595 PPEF2O14830 753 aa21.09■□□□□ 0.97
SS18-209ENST00000578595 ADRB2P07550 413 aa21.09■□□□□ 0.97
SS18-209ENST00000578595 TMEM191BP0C7N4 346 aa21.09■□□□□ 0.97
SS18-209ENST00000578595 FAM160A1Q05DH4 1040 aa21.09■□□□□ 0.97
SS18-209ENST00000578595 DPYDQ12882 1025 aa21.09■□□□□ 0.97
SS18-209ENST00000578595 CTXN3Q4LDR2 81 aa21.09■□□□□ 0.97
SS18-209ENST00000578595 C9orf57Q5W0N0 161 aa21.09■□□□□ 0.97
SS18-209ENST00000578595 ZNF280DQ6N043 979 aa21.09■□□□□ 0.97
SS18-209ENST00000578595 USP37Q86T82 979 aa21.09■□□□□ 0.97
SS18-209ENST00000578595 CBWD2Q8IUF1 395 aa21.09■□□□□ 0.97
SS18-209ENST00000578595 GJD3Q8N144 294 aa21.09■□□□□ 0.97
SS18-209ENST00000578595 KIAA0895Q8NCT3 520 aa21.09■□□□□ 0.97
SS18-209ENST00000578595 KREMEN2Q8NCW0 462 aa21.09■□□□□ 0.97
SS18-209ENST00000578595 APPL2Q8NEU8 664 aa21.09■□□□□ 0.97
SS18-209ENST00000578595 CACTINQ8WUQ7 758 aaKnown RBP21.09■□□□□ 0.97
SS18-209ENST00000578595 S1PR5Q9H228 398 aa21.09■□□□□ 0.97
SS18-209ENST00000578595 ADAM7Q9H2U9 754 aa21.09■□□□□ 0.97
SS18-209ENST00000578595 PIDD1Q9HB75 910 aa21.09■□□□□ 0.97
SS18-209ENST00000578595 PDE11AQ9HCR9 933 aa21.09■□□□□ 0.97
SS18-209ENST00000578595 TIMM13Q9Y5L4 95 aaPredicted RBP21.09■□□□□ 0.97
SS18-209ENST00000578595 C5orf42Q9H799 3197 aa21.09■□□□□ 0.97
SS18-209ENST00000578595 H7C4K7 107 aa21.08■□□□□ 0.97
SS18-209ENST00000578595 ADAM12O43184 909 aa21.08■□□□□ 0.97
SS18-209ENST00000578595 TGFB1I1O43294 461 aa21.08■□□□□ 0.97
SS18-209ENST00000578595 KRT19P08727 400 aa21.08■□□□□ 0.97
SS18-209ENST00000578595 MTHFRP42898 656 aa21.08■□□□□ 0.97
SS18-209ENST00000578595 WNT7BP56706 349 aa21.08■□□□□ 0.97
SS18-209ENST00000578595 POU5F1Q01860 360 aaKnown RBP21.08■□□□□ 0.97
SS18-209ENST00000578595 ZP2Q05996 745 aa21.08■□□□□ 0.97
SS18-209ENST00000578595 PNOCQ13519 176 aa21.08■□□□□ 0.97
SS18-209ENST00000578595 BMT2Q1RMZ1 405 aa21.08■□□□□ 0.97
SS18-209ENST00000578595 ATAT1Q5SQI0 421 aa21.08■□□□□ 0.97
SS18-209ENST00000578595 LMBRD2Q68DH5 695 aaPredicted RBP21.08■□□□□ 0.97
SS18-209ENST00000578595 NT5DC4Q86YG4 428 aa21.08■□□□□ 0.97
SS18-209ENST00000578595 FMR1NBQ8N0W7 255 aaPredicted RBP21.08■□□□□ 0.97
SS18-209ENST00000578595 XXYLT1Q8NBI6 393 aa21.08■□□□□ 0.97
SS18-209ENST00000578595 KIAA1586Q9HCI6 787 aa21.08■□□□□ 0.97
SS18-209ENST00000578595 PCDHB8Q9UN66 801 aa21.08■□□□□ 0.97
SS18-209ENST00000578595 EXOC3O60645 756 aa21.07■□□□□ 0.96
SS18-209ENST00000578595 RFPL2O75678 378 aa21.07■□□□□ 0.96
SS18-209ENST00000578595 KIF20AO95235 890 aa21.07■□□□□ 0.96
SS18-209ENST00000578595 ODC1P11926 461 aa21.07■□□□□ 0.96
SS18-209ENST00000578595 CPB1P15086 417 aa21.07■□□□□ 0.96
SS18-209ENST00000578595 SNRNP35Q16560 246 aaKnown RBP21.07■□□□□ 0.96
SS18-209ENST00000578595 GOLGA5Q8TBA6 731 aa21.07■□□□□ 0.96
SS18-209ENST00000578595 SUSD6Q92537 303 aa21.07■□□□□ 0.96
SS18-209ENST00000578595 ANKRD36BP1Q96IX9 119 aa21.07■□□□□ 0.96
SS18-209ENST00000578595 FAM84AQ96KN4 292 aa21.07■□□□□ 0.96
SS18-209ENST00000578595 ZNF560Q96MR9 790 aa21.07■□□□□ 0.96
SS18-209ENST00000578595 NECTIN4Q96NY8 510 aa21.07■□□□□ 0.96
SS18-209ENST00000578595 PHF7Q9BWX1 381 aaPredicted RBP21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms