RNA–Protein interactions for RNA: ENST00000578329.1

PPP4R1-209, Transcript of protein phosphatase 4 regulatory subunit 1, human

TSL 3

Gene PPP4R1, Length 350 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPP4R1-209	ENST00000578329	ZNF461	Q8TAF7	563 aa		4.88	□□□□□ -1.63
PPP4R1-209	ENST00000578329	DEPTOR	Q8TB45	409 aa		4.88	□□□□□ -1.63
PPP4R1-209	ENST00000578329	SHKBP1	Q8TBC3	707 aa		4.88	□□□□□ -1.63
PPP4R1-209	ENST00000578329	KIFAP3	Q92845	792 aa		4.88	□□□□□ -1.63
PPP4R1-209	ENST00000578329	ACSF2	Q96CM8	615 aa	Predicted RBP	4.88	□□□□□ -1.63
PPP4R1-209	ENST00000578329	RMDN1	Q96DB5	314 aa		4.88	□□□□□ -1.63
PPP4R1-209	ENST00000578329	MCRS1	Q96EZ8	462 aa		4.88	□□□□□ -1.63
PPP4R1-209	ENST00000578329	TBC1D32	Q96NH3	1257 aa		4.88	□□□□□ -1.63
PPP4R1-209	ENST00000578329	PRRX2	Q99811	253 aa		4.88	□□□□□ -1.63
PPP4R1-209	ENST00000578329	REEP2	Q9BRK0	252 aa		4.88	□□□□□ -1.63
PPP4R1-209	ENST00000578329	TRIM6	Q9C030	488 aa	Predicted RBP	4.88	□□□□□ -1.63
PPP4R1-209	ENST00000578329	GZF1	Q9H116	711 aa	Predicted RBP	4.88	□□□□□ -1.63
PPP4R1-209	ENST00000578329	C2orf40	Q9H1Z8	148 aa		4.88	□□□□□ -1.63
PPP4R1-209	ENST00000578329	IL21	Q9HBE4	155 aa		4.88	□□□□□ -1.63
PPP4R1-209	ENST00000578329	SH2B1	Q9NRF2	756 aa	Predicted RBP	4.88	□□□□□ -1.63
PPP4R1-209	ENST00000578329	FAM120A	Q9NZB2	1118 aa	Known RBP eCLIP	4.88	□□□□□ -1.63
PPP4R1-209	ENST00000578329	NME7	Q9Y5B8	376 aa		4.88	□□□□□ -1.63
PPP4R1-209	ENST00000578329	TIMM13	Q9Y5L4	95 aa	Predicted RBP	4.88	□□□□□ -1.63
PPP4R1-209	ENST00000578329	CHD8	Q9HCK8	2581 aa		4.88	□□□□□ -1.63
PPP4R1-209	ENST00000578329	DENND4C	Q5VZ89	1909 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	TPR	P12270	2363 aa	Known RBP	4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329		A0A0B4J269	797 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	MED19	A0JLT2	244 aa	Predicted RBP	4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	ANO9	A1A5B4	782 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	CARNS1	A5YM72	827 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	VWA3A	A6NCI4	1184 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	OTOL1	A6NHN0	477 aa	Predicted RBP	4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	CCDC169	A6NNP5	214 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	LACTBL1	A8MY62	500 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	LILRB5	O75023	590 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	TOM1L1	O75674	476 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	OAZ2	O95190	189 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	PRAMEF12	O95522	483 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	NFIC	P08651	508 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	PLA2G4B	P0C869	781 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	ATF2	P15336	505 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	ATF6	P18850	670 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	GJB2	P29033	226 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	NMT1	P30419	496 aa	Known RBP	4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	VIPR2	P41587	438 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	CASP5	P51878	434 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	HMGN5	P82970	282 aa	Known RBP	4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	CUL4A	Q13619	759 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	GRM2	Q14416	872 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	MCM6	Q14566	821 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	KARS	Q15046	597 aa	Known RBP	4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	MLF2	Q15773	248 aa	Predicted RBP	4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	ZNF568	Q3ZCX4	644 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	ZC2HC1C	Q53FD0	456 aa	Predicted RBP	4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	SLC44A4	Q53GD3	710 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	SPECC1	Q5M775	1068 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	PPM1L	Q5SGD2	360 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	NAIF1	Q69YI7	327 aa	Predicted RBP	4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	PKN3	Q6P5Z2	889 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	TSSK4	Q6SA08	328 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	GPIHBP1	Q8IV16	184 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	EFCAB13	Q8IY85	973 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	ADSSL1	Q8N142	457 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	ZBTB44	Q8NCP5	570 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	STKLD1	Q8NE28	680 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	DDX12P	Q92771	950 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	EZH1	Q92800	747 aa	Predicted RBP	4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	NXPE3	Q969Y0	559 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	DNAJC19	Q96DA6	116 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	EPSTI1	Q96J88	318 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	ZSCAN31	Q96LW9	406 aa	Predicted RBP	4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	ASB16	Q96NS5	453 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	PKMYT1	Q99640	499 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	TRPV4	Q9HBA0	871 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	BRMS1	Q9HCU9	246 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	PARD6A	Q9NPB6	346 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	LTB4R2	Q9NPC1	389 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	KMT5A	Q9NQR1	393 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	HEBP1	Q9NRV9	189 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	TMLHE	Q9NVH6	421 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	POLR3B	Q9NW08	1133 aa	Predicted RBP	4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	STK39	Q9UEW8	545 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	FBXO2	Q9UK22	296 aa	Predicted RBP	4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	CPSF3	Q9UKF6	684 aa	Known RBP	4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	KCNH3	Q9ULD8	1083 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	SSX2IP	Q9Y2D8	614 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	INSL5	Q9Y5Q6	135 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	CLIC4	Q9Y696	253 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	STYXL1	Q9Y6J8	313 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	PTPRJ	Q12913	1337 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	EML5	Q05BV3	1969 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	USP24	Q9UPU5	2620 aa		4.87	□□□□□ -1.63
PPP4R1-209	ENST00000578329	ACACB	O00763	2458 aa		4.86	□□□□□ -1.63
PPP4R1-209	ENST00000578329	KANSL1L	A0AUZ9	987 aa		4.86	□□□□□ -1.63
PPP4R1-209	ENST00000578329	MYMK	A6NI61	221 aa		4.86	□□□□□ -1.63
PPP4R1-209	ENST00000578329	PIR	O00625	290 aa		4.86	□□□□□ -1.63
PPP4R1-209	ENST00000578329	SYN3	O14994	580 aa		4.86	□□□□□ -1.63
PPP4R1-209	ENST00000578329	ECI2	O75521	394 aa		4.86	□□□□□ -1.63
PPP4R1-209	ENST00000578329	TADA3	O75528	432 aa		4.86	□□□□□ -1.63
PPP4R1-209	ENST00000578329	CHRNB1	P11230	501 aa		4.86	□□□□□ -1.63
PPP4R1-209	ENST00000578329	HARS	P12081	509 aa	Known RBP	4.86	□□□□□ -1.63
PPP4R1-209	ENST00000578329	HMGA1	P17096	107 aa	Known RBP	4.86	□□□□□ -1.63
PPP4R1-209	ENST00000578329	PLCG1	P19174	1290 aa		4.86	□□□□□ -1.63
PPP4R1-209	ENST00000578329	RPL9	P32969	192 aa	Known RBP	4.86	□□□□□ -1.63
PPP4R1-209	ENST00000578329	SOX9	P48436	509 aa		4.86	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms