RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 KIF4AO95239 1232 aa9.25□□□□□ -0.93
NUP88-211ENST00000575976 CST3P01034 146 aaPredicted RBP9.25□□□□□ -0.93
NUP88-211ENST00000575976 TNNC2P02585 160 aa9.25□□□□□ -0.93
NUP88-211ENST00000575976 ITGB3P05106 788 aa9.25□□□□□ -0.93
NUP88-211ENST00000575976 ITGB1P05556 798 aa9.25□□□□□ -0.93
NUP88-211ENST00000575976 RB1P06400 928 aa9.25□□□□□ -0.93
NUP88-211ENST00000575976 POLR2BP30876 1174 aaKnown RBP9.25□□□□□ -0.93
NUP88-211ENST00000575976 RPL9P32969 192 aaKnown RBP9.25□□□□□ -0.93
NUP88-211ENST00000575976 GCLMP48507 274 aa9.25□□□□□ -0.93
NUP88-211ENST00000575976 ZNF445P59923 1031 aa9.25□□□□□ -0.93
NUP88-211ENST00000575976 PPP3CAQ08209 521 aa9.25□□□□□ -0.93
NUP88-211ENST00000575976 IQCB1Q15051 598 aa9.25□□□□□ -0.93
NUP88-211ENST00000575976 DCAF17Q5H9S7 520 aaPredicted RBP9.25□□□□□ -0.93
NUP88-211ENST00000575976 TCERG1LQ5VWI1 586 aa9.25□□□□□ -0.93
NUP88-211ENST00000575976 TDRD10Q5VZ19 366 aaKnown RBP9.25□□□□□ -0.93
NUP88-211ENST00000575976 C9orf57Q5W0N0 161 aa9.25□□□□□ -0.93
NUP88-211ENST00000575976 SV2AQ7L0J3 742 aa9.25□□□□□ -0.93
NUP88-211ENST00000575976 TRAPPC11Q7Z392 1133 aa9.25□□□□□ -0.93
NUP88-211ENST00000575976 USP37Q86T82 979 aa9.25□□□□□ -0.93
NUP88-211ENST00000575976 TRIM59Q8IWR1 403 aa9.25□□□□□ -0.93
NUP88-211ENST00000575976 DHX40Q8IX18 779 aaKnown RBP9.25□□□□□ -0.93
NUP88-211ENST00000575976 KLHL23Q8NBE8 558 aa9.25□□□□□ -0.93
NUP88-211ENST00000575976 C3orf58Q8NDZ4 430 aa9.25□□□□□ -0.93
NUP88-211ENST00000575976 CXorf38Q8TB03 319 aa9.25□□□□□ -0.93
NUP88-211ENST00000575976 HASPINQ8TF76 798 aa9.25□□□□□ -0.93
NUP88-211ENST00000575976 ARNTL2Q8WYA1 636 aa9.25□□□□□ -0.93
NUP88-211ENST00000575976 IGSF21Q96ID5 467 aa9.25□□□□□ -0.93
NUP88-211ENST00000575976 PLVAPQ9BX97 442 aa9.25□□□□□ -0.93
NUP88-211ENST00000575976 TSPY26PQ9H489 355 aa9.25□□□□□ -0.93
NUP88-211ENST00000575976 ZNF576Q9H609 170 aa9.25□□□□□ -0.93
NUP88-211ENST00000575976 CBX8Q9HC52 389 aa9.25□□□□□ -0.93
NUP88-211ENST00000575976 SPG21Q9NZD8 308 aa9.25□□□□□ -0.93
NUP88-211ENST00000575976 MAGEC2Q9UBF1 373 aaPredicted RBP9.25□□□□□ -0.93
NUP88-211ENST00000575976 SIX4Q9UIU6 781 aa9.25□□□□□ -0.93
NUP88-211ENST00000575976 AGAP1Q9UPQ3 857 aa9.25□□□□□ -0.93
NUP88-211ENST00000575976 RWDD3Q9Y3V2 267 aa9.25□□□□□ -0.93
NUP88-211ENST00000575976 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.25□□□□□ -0.93
NUP88-211ENST00000575976 ANK1P16157 1881 aa9.25□□□□□ -0.93
NUP88-211ENST00000575976 RALGAPA2Q2PPJ7 1873 aa9.25□□□□□ -0.93
NUP88-211ENST00000575976 TDRD15B5MCY1 1934 aaKnown RBP9.25□□□□□ -0.93
NUP88-211ENST00000575976 PIEZO1Q92508 2521 aa9.25□□□□□ -0.93
NUP88-211ENST00000575976 EPOPA6NHQ4 379 aa9.24□□□□□ -0.93
NUP88-211ENST00000575976 SMTNL1A8MU46 457 aa9.24□□□□□ -0.93
NUP88-211ENST00000575976 BECN2A8MW95 431 aa9.24□□□□□ -0.93
NUP88-211ENST00000575976 KCNJ18B7U540 433 aa9.24□□□□□ -0.93
NUP88-211ENST00000575976 TMEM189-UBE2V1I3L0A0 370 aa9.24□□□□□ -0.93
NUP88-211ENST00000575976 PHACTR2O75167 634 aa9.24□□□□□ -0.93
NUP88-211ENST00000575976 TADA2AO75478 443 aa9.24□□□□□ -0.93
NUP88-211ENST00000575976 FGF18O76093 207 aa9.24□□□□□ -0.93
NUP88-211ENST00000575976 KRT19P08727 400 aa9.24□□□□□ -0.93
NUP88-211ENST00000575976 MTIF2P46199 727 aaKnown RBP9.24□□□□□ -0.93
NUP88-211ENST00000575976 BRCC3P46736 316 aa9.24□□□□□ -0.93
NUP88-211ENST00000575976 AP3M2P53677 418 aa9.24□□□□□ -0.93
NUP88-211ENST00000575976 RBP5P82980 135 aa9.24□□□□□ -0.93
NUP88-211ENST00000575976 PLCB3Q01970 1234 aa9.24□□□□□ -0.93
NUP88-211ENST00000575976 BIRC3Q13489 604 aa9.24□□□□□ -0.93
NUP88-211ENST00000575976 GPM6BQ13491 265 aa9.24□□□□□ -0.93
NUP88-211ENST00000575976 KCNJ12Q14500 433 aa9.24□□□□□ -0.93
NUP88-211ENST00000575976 ZACNQ401N2 412 aa9.24□□□□□ -0.93
NUP88-211ENST00000575976 CBWD6Q4V339 395 aa9.24□□□□□ -0.93
NUP88-211ENST00000575976 CBWD3Q5JTY5 395 aa9.24□□□□□ -0.93
NUP88-211ENST00000575976 CBWD5Q5RIA9 395 aa9.24□□□□□ -0.93
NUP88-211ENST00000575976 CDKAL1Q5VV42 579 aa9.24□□□□□ -0.93
NUP88-211ENST00000575976 C15orf39Q6ZRI6 1047 aa9.24□□□□□ -0.93
NUP88-211ENST00000575976 FAM114A1Q8IWE2 563 aa9.24□□□□□ -0.93
NUP88-211ENST00000575976 FBXO22Q8NEZ5 403 aa9.24□□□□□ -0.93
NUP88-211ENST00000575976 SPPL3Q8TCT6 385 aa9.24□□□□□ -0.93
NUP88-211ENST00000575976 ATXN2LQ8WWM7 1075 aaKnown RBP9.24□□□□□ -0.93
NUP88-211ENST00000575976 SLC35C1Q96A29 364 aa9.24□□□□□ -0.93
NUP88-211ENST00000575976 C1QTNF1Q9BXJ1 281 aa9.24□□□□□ -0.93
NUP88-211ENST00000575976 GPR62Q9BZJ7 368 aa9.24□□□□□ -0.93
NUP88-211ENST00000575976 HSD3B7Q9H2F3 369 aa9.24□□□□□ -0.93
NUP88-211ENST00000575976 TTYH1Q9H313 450 aaPredicted RBP9.24□□□□□ -0.93
NUP88-211ENST00000575976 TMEM8AQ9HCN3 771 aa9.24□□□□□ -0.93
NUP88-211ENST00000575976 ALG13Q9NP73 1137 aaKnown RBP9.24□□□□□ -0.93
NUP88-211ENST00000575976 ADAM28Q9UKQ2 775 aa9.24□□□□□ -0.93
NUP88-211ENST00000575976 ITGA11Q9UKX5 1188 aa9.24□□□□□ -0.93
NUP88-211ENST00000575976 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.24□□□□□ -0.93
NUP88-211ENST00000575976 PDCD11Q14690 1871 aaKnown RBP9.23□□□□□ -0.93
NUP88-211ENST00000575976 CARNS1A5YM72 827 aa9.23□□□□□ -0.93
NUP88-211ENST00000575976 H3BNC9 293 aa9.23□□□□□ -0.93
NUP88-211ENST00000575976 I3L4J1 428 aa9.23□□□□□ -0.93
NUP88-211ENST00000575976 SPTLC1O15269 473 aa9.23□□□□□ -0.93
NUP88-211ENST00000575976 GRM6O15303 877 aa9.23□□□□□ -0.93
NUP88-211ENST00000575976 STX10O60499 249 aa9.23□□□□□ -0.93
NUP88-211ENST00000575976 VNN1O95497 513 aa9.23□□□□□ -0.93
NUP88-211ENST00000575976 CAVIN2O95810 425 aa9.23□□□□□ -0.93
NUP88-211ENST00000575976 EFEMP2O95967 443 aa9.23□□□□□ -0.93
NUP88-211ENST00000575976 ZNF18P17022 549 aa9.23□□□□□ -0.93
NUP88-211ENST00000575976 GTF2H1P32780 548 aa9.23□□□□□ -0.93
NUP88-211ENST00000575976 PPM1AP35813 382 aa9.23□□□□□ -0.93
NUP88-211ENST00000575976 KRT17Q04695 432 aa9.23□□□□□ -0.93
NUP88-211ENST00000575976 KCNH2Q12809 1159 aa9.23□□□□□ -0.93
NUP88-211ENST00000575976 TRPC3Q13507 836 aa9.23□□□□□ -0.93
NUP88-211ENST00000575976 NCOA4Q13772 614 aa9.23□□□□□ -0.93
NUP88-211ENST00000575976 TIGD5Q53EQ6 642 aa9.23□□□□□ -0.93
NUP88-211ENST00000575976 TCP11X2Q5H9J9 407 aa9.23□□□□□ -0.93
NUP88-211ENST00000575976 KRT39Q6A163 491 aa9.23□□□□□ -0.93
NUP88-211ENST00000575976 FUT10Q6P4F1 479 aa9.23□□□□□ -0.93
NUP88-211ENST00000575976 TAS1R1Q7RTX1 841 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms