RNA–Protein interactions for RNA: ENST00000572019.1

NUP88-203, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-203ENST00000572019 MRPS17Q9Y2R5 130 aaKnown RBP21.02■□□□□ 0.96
NUP88-203ENST00000572019 DYNC1LI1Q9Y6G9 523 aaKnown RBP21.02■□□□□ 0.96
NUP88-203ENST00000572019 CCDC169A6NNP5 214 aa21.01■□□□□ 0.95
NUP88-203ENST00000572019 ARNTLO00327 626 aa21.01■□□□□ 0.95
NUP88-203ENST00000572019 PROZP22891 400 aa21.01■□□□□ 0.95
NUP88-203ENST00000572019 ANAPC15P60006 121 aa21.01■□□□□ 0.95
NUP88-203ENST00000572019 TWF1Q12792 350 aa21.01■□□□□ 0.95
NUP88-203ENST00000572019 MAPK7Q13164 816 aa21.01■□□□□ 0.95
NUP88-203ENST00000572019 SRSF5Q13243 272 aaKnown RBP21.01■□□□□ 0.95
NUP88-203ENST00000572019 TEAD2Q15562 447 aa21.01■□□□□ 0.95
NUP88-203ENST00000572019 CTXN3Q4LDR2 81 aa21.01■□□□□ 0.95
NUP88-203ENST00000572019 RNF19BQ6ZMZ0 732 aa21.01■□□□□ 0.95
NUP88-203ENST00000572019 PDZD4Q76G19 769 aaPredicted RBP21.01■□□□□ 0.95
NUP88-203ENST00000572019 FAM3CQ92520 227 aa21.01■□□□□ 0.95
NUP88-203ENST00000572019 KIFAP3Q92845 792 aa21.01■□□□□ 0.95
NUP88-203ENST00000572019 RUSC1Q9BVN2 902 aa21.01■□□□□ 0.95
NUP88-203ENST00000572019 CCDC94Q9BW85 323 aaPredicted RBP21.01■□□□□ 0.95
NUP88-203ENST00000572019 CRISPLD1Q9H336 500 aa21.01■□□□□ 0.95
NUP88-203ENST00000572019 DDX19AQ9NUU7 478 aaKnown RBP21.01■□□□□ 0.95
NUP88-203ENST00000572019 TUBGCP4Q9UGJ1 667 aa21.01■□□□□ 0.95
NUP88-203ENST00000572019 PIAS3Q9Y6X2 628 aa21.01■□□□□ 0.95
NUP88-203ENST00000572019 ATG2BQ96BY7 2078 aa21.01■□□□□ 0.95
NUP88-203ENST00000572019 PHLPP2Q6ZVD8 1323 aa21.01■□□□□ 0.95
NUP88-203ENST00000572019 PP2D1A8MPX8 630 aa21■□□□□ 0.95
NUP88-203ENST00000572019 E9PMD0 336 aa21■□□□□ 0.95
NUP88-203ENST00000572019 SYN3O14994 580 aa21■□□□□ 0.95
NUP88-203ENST00000572019 HIP1RO75146 1068 aa21■□□□□ 0.95
NUP88-203ENST00000572019 CHRNB1P11230 501 aa21■□□□□ 0.95
NUP88-203ENST00000572019 HARSP12081 509 aaKnown RBP21■□□□□ 0.95
NUP88-203ENST00000572019 MYL4P12829 197 aa21■□□□□ 0.95
NUP88-203ENST00000572019 KCNE1P15382 129 aa21■□□□□ 0.95
NUP88-203ENST00000572019 SOX9P48436 509 aa21■□□□□ 0.95
NUP88-203ENST00000572019 LMNB2Q03252 620 aa21■□□□□ 0.95
NUP88-203ENST00000572019 TTC38Q5R3I4 469 aa21■□□□□ 0.95
NUP88-203ENST00000572019 SHKBP1Q8TBC3 707 aa21■□□□□ 0.95
NUP88-203ENST00000572019 ZSCAN18Q8TBC5 510 aaPredicted RBP21■□□□□ 0.95
NUP88-203ENST00000572019 SMARCD2Q92925 531 aa21■□□□□ 0.95
NUP88-203ENST00000572019 BORCS6Q96GS4 357 aa21■□□□□ 0.95
NUP88-203ENST00000572019 SUSD3Q96L08 255 aa21■□□□□ 0.95
NUP88-203ENST00000572019 RBM12Q9NTZ6 932 aaKnown RBP21■□□□□ 0.95
NUP88-203ENST00000572019 CNTN3Q9P232 1028 aa21■□□□□ 0.95
NUP88-203ENST00000572019 ARHGAP28Q9P2N2 729 aa21■□□□□ 0.95
NUP88-203ENST00000572019 CHD8Q9HCK8 2581 aa20.99■□□□□ 0.95
NUP88-203ENST00000572019 NUP210Q8TEM1 1887 aaPredicted RBP20.99■□□□□ 0.95
NUP88-203ENST00000572019 OR4Q2P0C623 313 aa20.99■□□□□ 0.95
NUP88-203ENST00000572019 PSMC3P17980 439 aa20.99■□□□□ 0.95
NUP88-203ENST00000572019 CCNE1P24864 410 aa20.99■□□□□ 0.95
NUP88-203ENST00000572019 YARSP54577 528 aaKnown RBP20.99■□□□□ 0.95
NUP88-203ENST00000572019 SPAG1Q07617 926 aa20.99■□□□□ 0.95
NUP88-203ENST00000572019 SLC10A6Q3KNW5 377 aa20.99■□□□□ 0.95
NUP88-203ENST00000572019 STXBP5Q5T5C0 1151 aa20.99■□□□□ 0.95
NUP88-203ENST00000572019 KCNK18Q7Z418 384 aa20.99■□□□□ 0.95
NUP88-203ENST00000572019 GPR161Q8N6U8 529 aaKnown RBP20.99■□□□□ 0.95
NUP88-203ENST00000572019 DDX12PQ92771 950 aa20.99■□□□□ 0.95
NUP88-203ENST00000572019 TBC1D32Q96NH3 1257 aa20.99■□□□□ 0.95
NUP88-203ENST00000572019 LRRC3Q9BY71 257 aa20.99■□□□□ 0.95
NUP88-203ENST00000572019 TOPORSQ9NS56 1045 aaPredicted RBP20.99■□□□□ 0.95
NUP88-203ENST00000572019 NUB1Q9Y5A7 615 aa20.99■□□□□ 0.95
NUP88-203ENST00000572019 SFI1A8K8P3 1242 aa20.98■□□□□ 0.95
NUP88-203ENST00000572019 MAN2B1O00754 1011 aa20.98■□□□□ 0.95
NUP88-203ENST00000572019 MICAL2O94851 1124 aa20.98■□□□□ 0.95
NUP88-203ENST00000572019 CDC25AP30304 524 aa20.98■□□□□ 0.95
NUP88-203ENST00000572019 MCM4P33991 863 aa20.98■□□□□ 0.95
NUP88-203ENST00000572019 FXR2P51116 673 aaKnown RBP eCLIP20.98■□□□□ 0.95
NUP88-203ENST00000572019 EPHA5P54756 1037 aa20.98■□□□□ 0.95
NUP88-203ENST00000572019 IL17AQ16552 155 aa20.98■□□□□ 0.95
NUP88-203ENST00000572019 Q6ZS52 159 aa20.98■□□□□ 0.95
NUP88-203ENST00000572019 IRF7Q92985 503 aa20.98■□□□□ 0.95
NUP88-203ENST00000572019 SECISBP2LQ93073 1101 aaKnown RBP20.98■□□□□ 0.95
NUP88-203ENST00000572019 ACAP3Q96P50 834 aa20.98■□□□□ 0.95
NUP88-203ENST00000572019 LRRC3BQ96PB8 259 aa20.98■□□□□ 0.95
NUP88-203ENST00000572019 MRPL4Q9BYD3 311 aaKnown RBP20.98■□□□□ 0.95
NUP88-203ENST00000572019 FAM126AQ9BYI3 521 aaPredicted RBP20.98■□□□□ 0.95
NUP88-203ENST00000572019 DNAJC25Q9H1X3 360 aa20.98■□□□□ 0.95
NUP88-203ENST00000572019 TMEM134Q9H6X4 195 aa20.98■□□□□ 0.95
NUP88-203ENST00000572019 SLC38A7Q9NVC3 462 aa20.98■□□□□ 0.95
NUP88-203ENST00000572019 GMEB2Q9UKD1 530 aa20.98■□□□□ 0.95
NUP88-203ENST00000572019 TIMM13Q9Y5L4 95 aaPredicted RBP20.98■□□□□ 0.95
NUP88-203ENST00000572019 TSC2P49815 1807 aa20.98■□□□□ 0.95
NUP88-203ENST00000572019 CNOT1A5YKK6 2376 aaKnown RBP20.97■□□□□ 0.95
NUP88-203ENST00000572019 HEPACAM2A8MVW5 462 aa20.97■□□□□ 0.95
NUP88-203ENST00000572019 PRR5-ARHGAP8B1AHC4 643 aa20.97■□□□□ 0.95
NUP88-203ENST00000572019 CHURC1-FNTBB4DL54 471 aa20.97■□□□□ 0.95
NUP88-203ENST00000572019 H7C4K7 107 aa20.97■□□□□ 0.95
NUP88-203ENST00000572019 ZNF197O14709 1029 aa20.97■□□□□ 0.95
NUP88-203ENST00000572019 SLC16A4O15374 487 aa20.97■□□□□ 0.95
NUP88-203ENST00000572019 HRO43593 1189 aa20.97■□□□□ 0.95
NUP88-203ENST00000572019 FNTBP49356 437 aa20.97■□□□□ 0.95
NUP88-203ENST00000572019 NEK4P51957 841 aa20.97■□□□□ 0.95
NUP88-203ENST00000572019 ARHGAP8P85298 464 aa20.97■□□□□ 0.95
NUP88-203ENST00000572019 CYP4A22Q5TCH4 519 aa20.97■□□□□ 0.95
NUP88-203ENST00000572019 TPGS2Q68CL5 300 aa20.97■□□□□ 0.95
NUP88-203ENST00000572019 HAUS3Q68CZ6 603 aa20.97■□□□□ 0.95
NUP88-203ENST00000572019 MPZL3Q6UWV2 235 aa20.97■□□□□ 0.95
NUP88-203ENST00000572019 MAMSTRQ6ZN01 415 aa20.97■□□□□ 0.95
NUP88-203ENST00000572019 PRR23BQ6ZRT6 265 aa20.97■□□□□ 0.95
NUP88-203ENST00000572019 TMC8Q8IU68 726 aa20.97■□□□□ 0.95
NUP88-203ENST00000572019 PGLYRP2Q96PD5 576 aa20.97■□□□□ 0.95
NUP88-203ENST00000572019 HAPLN2Q9GZV7 340 aa20.97■□□□□ 0.95
NUP88-203ENST00000572019 TRPV5Q9NQA5 729 aa20.97■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms