RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 ATP13A4Q4VNC1 1196 aa10.59□□□□□ -0.71
VPS53-206ENST00000570359 PRAMEF19Q5SWL8 479 aa10.59□□□□□ -0.71
VPS53-206ENST00000570359 ATF7IP2Q5U623 682 aa10.59□□□□□ -0.71
VPS53-206ENST00000570359 CCDC137Q6PK04 289 aaKnown RBP10.59□□□□□ -0.71
VPS53-206ENST00000570359 TAB3Q8N5C8 712 aaPredicted RBP10.59□□□□□ -0.71
VPS53-206ENST00000570359 PRELID2Q8N945 189 aa10.59□□□□□ -0.71
VPS53-206ENST00000570359 CAVIN3Q969G5 261 aa10.59□□□□□ -0.71
VPS53-206ENST00000570359 RNF25Q96BH1 459 aaPredicted RBP10.59□□□□□ -0.71
VPS53-206ENST00000570359 KIAA1586Q9HCI6 787 aa10.59□□□□□ -0.71
VPS53-206ENST00000570359 PCDHB2Q9Y5E7 798 aa10.59□□□□□ -0.71
VPS53-206ENST00000570359 IVNS1ABPQ9Y6Y0 642 aa10.59□□□□□ -0.71
VPS53-206ENST00000570359 CCDC188H7C350 402 aa10.59□□□□□ -0.71
VPS53-206ENST00000570359 MYO1FO00160 1098 aa10.59□□□□□ -0.71
VPS53-206ENST00000570359 TOM1L1O75674 476 aa10.59□□□□□ -0.71
VPS53-206ENST00000570359 GNGT1P63211 74 aa10.59□□□□□ -0.71
VPS53-206ENST00000570359 IFFO1Q0D2I5 559 aa10.59□□□□□ -0.71
VPS53-206ENST00000570359 PPP1R7Q15435 360 aa10.59□□□□□ -0.71
VPS53-206ENST00000570359 ZNF699Q32M78 642 aa10.59□□□□□ -0.71
VPS53-206ENST00000570359 ODF2Q5BJF6 829 aa10.59□□□□□ -0.71
VPS53-206ENST00000570359 C15orf39Q6ZRI6 1047 aa10.59□□□□□ -0.71
VPS53-206ENST00000570359 DPP9Q86TI2 863 aa10.59□□□□□ -0.71
VPS53-206ENST00000570359 EFCAB13Q8IY85 973 aa10.59□□□□□ -0.71
VPS53-206ENST00000570359 NLRP7Q8WX94 980 aa10.59□□□□□ -0.71
VPS53-206ENST00000570359 PIK3R5Q8WYR1 880 aa10.59□□□□□ -0.71
VPS53-206ENST00000570359 ACO2Q99798 780 aaKnown RBP10.59□□□□□ -0.71
VPS53-206ENST00000570359 HERPUD2Q9BSE4 406 aa10.59□□□□□ -0.71
VPS53-206ENST00000570359 RSPH14Q9UHP6 348 aa10.59□□□□□ -0.71
VPS53-206ENST00000570359 DICER1Q9UPY3 1922 aaKnown RBP10.58□□□□□ -0.72
VPS53-206ENST00000570359 OPA1O60313 960 aa10.58□□□□□ -0.72
VPS53-206ENST00000570359 CYP1A2P05177 515 aa10.58□□□□□ -0.72
VPS53-206ENST00000570359 RARAP10276 462 aa10.58□□□□□ -0.72
VPS53-206ENST00000570359 GZMAP12544 262 aa10.58□□□□□ -0.72
VPS53-206ENST00000570359 RWDD2BP57060 319 aa10.58□□□□□ -0.72
VPS53-206ENST00000570359 RPL7AP62424 266 aaKnown RBP10.58□□□□□ -0.72
VPS53-206ENST00000570359 UAP1Q16222 522 aaPredicted RBP10.58□□□□□ -0.72
VPS53-206ENST00000570359 IER5Q5VY09 327 aa10.58□□□□□ -0.72
VPS53-206ENST00000570359 C11orf63Q6NUN7 778 aa10.58□□□□□ -0.72
VPS53-206ENST00000570359 FASTKD5Q7L8L6 764 aaKnown RBP10.58□□□□□ -0.72
VPS53-206ENST00000570359 APOL6Q9BWW8 343 aa10.58□□□□□ -0.72
VPS53-206ENST00000570359 TJP2Q9UDY2 1190 aa10.58□□□□□ -0.72
VPS53-206ENST00000570359 GOLGA6L10A6NI86 522 aa10.58□□□□□ -0.72
VPS53-206ENST00000570359 LDHAP00338 332 aaKnown RBP10.58□□□□□ -0.72
VPS53-206ENST00000570359 NFICP08651 508 aa10.58□□□□□ -0.72
VPS53-206ENST00000570359 TGFB3P10600 412 aa10.58□□□□□ -0.72
VPS53-206ENST00000570359 ATF7P17544 494 aaPredicted RBP10.58□□□□□ -0.72
VPS53-206ENST00000570359 ACO1P21399 889 aaKnown RBP10.58□□□□□ -0.72
VPS53-206ENST00000570359 SLCO1A2P46721 670 aa10.58□□□□□ -0.72
VPS53-206ENST00000570359 PTENP60484 403 aa10.58□□□□□ -0.72
VPS53-206ENST00000570359 GRM1Q13255 1194 aa10.58□□□□□ -0.72
VPS53-206ENST00000570359 WDR72Q3MJ13 1102 aa10.58□□□□□ -0.72
VPS53-206ENST00000570359 FBXO25Q8TCJ0 367 aa10.58□□□□□ -0.72
VPS53-206ENST00000570359 WHAMMQ8TF30 809 aa10.58□□□□□ -0.72
VPS53-206ENST00000570359 FAM167AQ96KS9 214 aa10.58□□□□□ -0.72
VPS53-206ENST00000570359 CALR3Q96L12 384 aaKnown RBP10.58□□□□□ -0.72
VPS53-206ENST00000570359 MCEEQ96PE7 176 aa10.58□□□□□ -0.72
VPS53-206ENST00000570359 FMO2Q99518 471 aa10.58□□□□□ -0.72
VPS53-206ENST00000570359 SLITRK6Q9H5Y7 841 aa10.58□□□□□ -0.72
VPS53-206ENST00000570359 CISHQ9NSE2 258 aa10.58□□□□□ -0.72
VPS53-206ENST00000570359 BTBD19C9JJ37 291 aa10.57□□□□□ -0.72
VPS53-206ENST00000570359 CES2O00748 559 aa10.57□□□□□ -0.72
VPS53-206ENST00000570359 TLR3O15455 904 aaKnown RBP10.57□□□□□ -0.72
VPS53-206ENST00000570359 LGALS2P05162 132 aa10.57□□□□□ -0.72
VPS53-206ENST00000570359 UNGP13051 313 aaPredicted RBP10.57□□□□□ -0.72
VPS53-206ENST00000570359 PEX5P50542 639 aa10.57□□□□□ -0.72
VPS53-206ENST00000570359 TAS2R40P59535 323 aa10.57□□□□□ -0.72
VPS53-206ENST00000570359 GUCY1A3Q02108 690 aa10.57□□□□□ -0.72
VPS53-206ENST00000570359 SGO2Q562F6 1265 aa10.57□□□□□ -0.72
VPS53-206ENST00000570359 BRSK2Q8IWQ3 736 aa10.57□□□□□ -0.72
VPS53-206ENST00000570359 GPRC5AQ8NFJ5 357 aa10.57□□□□□ -0.72
VPS53-206ENST00000570359 PWWP2AQ96N64 755 aa10.57□□□□□ -0.72
VPS53-206ENST00000570359 NAP1L3Q99457 506 aaPredicted RBP10.57□□□□□ -0.72
VPS53-206ENST00000570359 SMARCAD1Q9H4L7 1026 aa10.57□□□□□ -0.72
VPS53-206ENST00000570359 CHST7Q9NS84 486 aa10.57□□□□□ -0.72
VPS53-206ENST00000570359 ASIC3Q9UHC3 531 aa10.57□□□□□ -0.72
VPS53-206ENST00000570359 ADGRA2Q96PE1 1338 aa10.57□□□□□ -0.72
VPS53-206ENST00000570359 MIF4GDA9UHW6 222 aaKnown RBP10.57□□□□□ -0.72
VPS53-206ENST00000570359 OGTO15294 1046 aa10.57□□□□□ -0.72
VPS53-206ENST00000570359 PHF2O75151 1096 aa10.57□□□□□ -0.72
VPS53-206ENST00000570359 MYCNP04198 464 aaPredicted RBP10.57□□□□□ -0.72
VPS53-206ENST00000570359 ITGB3P05106 788 aa10.57□□□□□ -0.72
VPS53-206ENST00000570359 KRT10P13645 584 aa10.57□□□□□ -0.72
VPS53-206ENST00000570359 RPL21P46778 160 aaKnown RBP10.57□□□□□ -0.72
VPS53-206ENST00000570359 DUOXA2Q1HG44 320 aa10.57□□□□□ -0.72
VPS53-206ENST00000570359 KIZQ2M2Z5 673 aa10.57□□□□□ -0.72
VPS53-206ENST00000570359 SLC13A5Q86YT5 568 aaPredicted RBP10.57□□□□□ -0.72
VPS53-206ENST00000570359 TCP11Q8WWU5 503 aa10.57□□□□□ -0.72
VPS53-206ENST00000570359 ZNF606Q8WXB4 792 aa10.57□□□□□ -0.72
VPS53-206ENST00000570359 VTI1AQ96AJ9 217 aa10.57□□□□□ -0.72
VPS53-206ENST00000570359 CCDC113Q9H0I3 377 aa10.57□□□□□ -0.72
VPS53-206ENST00000570359 WNT8AQ9H1J5 351 aa10.57□□□□□ -0.72
VPS53-206ENST00000570359 HMGXB4Q9UGU5 601 aa10.57□□□□□ -0.72
VPS53-206ENST00000570359 KCNH4Q9UQ05 1017 aa10.57□□□□□ -0.72
VPS53-206ENST00000570359 R3HDM2Q9Y2K5 976 aaKnown RBP10.57□□□□□ -0.72
VPS53-206ENST00000570359 DCDC2CA8MYV0 355 aa10.56□□□□□ -0.72
VPS53-206ENST00000570359 GPR25O00155 361 aa10.56□□□□□ -0.72
VPS53-206ENST00000570359 TNNC2P02585 160 aa10.56□□□□□ -0.72
VPS53-206ENST00000570359 RALAP11233 206 aa10.56□□□□□ -0.72
VPS53-206ENST00000570359 TNFRSF8P28908 595 aa10.56□□□□□ -0.72
VPS53-206ENST00000570359 ACTN2P35609 894 aa10.56□□□□□ -0.72
VPS53-206ENST00000570359 EFNA5P52803 228 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms