RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 BASP1P80723 227 aaKnown RBP15.35■□□□□ 0.05
VPS35-210ENST00000568784 SMAD1Q15797 465 aaKnown RBP15.35■□□□□ 0.05
VPS35-210ENST00000568784 PODNQ7Z5L7 613 aa15.35■□□□□ 0.05
VPS35-210ENST00000568784 PARD3BQ8TEW8 1205 aa15.35■□□□□ 0.05
VPS35-210ENST00000568784 MAGEB18Q96M61 343 aa15.35■□□□□ 0.05
VPS35-210ENST00000568784 ZNF341Q9BYN7 854 aa15.35■□□□□ 0.05
VPS35-210ENST00000568784 KIAA1683Q9H0B3 1180 aa15.35■□□□□ 0.05
VPS35-210ENST00000568784 LRRC19Q9H756 370 aa15.35■□□□□ 0.05
VPS35-210ENST00000568784 SDAD1Q9NVU7 687 aaKnown RBP eCLIP15.35■□□□□ 0.05
VPS35-210ENST00000568784 DGKZQ13574 1117 aa15.35■□□□□ 0.05
VPS35-210ENST00000568784 RCN2Q14257 317 aa15.35■□□□□ 0.05
VPS35-210ENST00000568784 UGCGQ16739 394 aa15.35■□□□□ 0.05
VPS35-210ENST00000568784 NLRX1Q86UT6 975 aa15.35■□□□□ 0.05
VPS35-210ENST00000568784 SHC3Q92529 594 aa15.35■□□□□ 0.05
VPS35-210ENST00000568784 TMEM121Q9BTD3 319 aa15.35■□□□□ 0.05
VPS35-210ENST00000568784 IMPG2Q9BZV3 1241 aa15.35■□□□□ 0.05
VPS35-210ENST00000568784 DNPEPQ9ULA0 475 aa15.35■□□□□ 0.05
VPS35-210ENST00000568784 PHLPP1O60346 1717 aa15.35■□□□□ 0.05
VPS35-210ENST00000568784 KRT4P19013 534 aa15.34■□□□□ 0.05
VPS35-210ENST00000568784 GNA15P30679 374 aa15.34■□□□□ 0.05
VPS35-210ENST00000568784 RPA3P35244 121 aaPredicted RBP15.34■□□□□ 0.05
VPS35-210ENST00000568784 NPTX2P47972 431 aa15.34■□□□□ 0.05
VPS35-210ENST00000568784 TSNAXIP1Q2TAA8 658 aa15.34■□□□□ 0.05
VPS35-210ENST00000568784 EAPPQ56P03 285 aaPredicted RBP15.34■□□□□ 0.05
VPS35-210ENST00000568784 ARHGEF16Q5VV41 709 aa15.34■□□□□ 0.05
VPS35-210ENST00000568784 MCOLN2Q8IZK6 566 aa15.34■□□□□ 0.05
VPS35-210ENST00000568784 PYROXD1Q8WU10 500 aa15.34■□□□□ 0.05
VPS35-210ENST00000568784 STMN2Q93045 179 aa15.34■□□□□ 0.05
VPS35-210ENST00000568784 ZNF668Q96K58 619 aaPredicted RBP15.34■□□□□ 0.05
VPS35-210ENST00000568784 SYT11Q9BT88 431 aa15.34■□□□□ 0.05
VPS35-210ENST00000568784 USH1CQ9Y6N9 552 aa15.34■□□□□ 0.05
VPS35-210ENST00000568784 DLEC1Q9Y238 1755 aa15.34■□□□□ 0.05
VPS35-210ENST00000568784 C21orf2O43822 256 aa15.34■□□□□ 0.05
VPS35-210ENST00000568784 SMIM24O75264 130 aa15.34■□□□□ 0.05
VPS35-210ENST00000568784 TAC1P20366 129 aa15.34■□□□□ 0.05
VPS35-210ENST00000568784 ZNF268Q14587 947 aaPredicted RBP15.34■□□□□ 0.05
VPS35-210ENST00000568784 DLGAP5Q15398 846 aa15.34■□□□□ 0.05
VPS35-210ENST00000568784 GLIS1Q8NBF1 620 aa15.34■□□□□ 0.05
VPS35-210ENST00000568784 CRYGNQ8WXF5 182 aa15.34■□□□□ 0.05
VPS35-210ENST00000568784 VTI1AQ96AJ9 217 aa15.34■□□□□ 0.05
VPS35-210ENST00000568784 ZNF570Q96NI8 536 aa15.34■□□□□ 0.05
VPS35-210ENST00000568784 TMEM8AQ9HCN3 771 aa15.34■□□□□ 0.05
VPS35-210ENST00000568784 GABBR1Q9UBS5 961 aa15.34■□□□□ 0.05
VPS35-210ENST00000568784 TBX20Q9UMR3 447 aa15.34■□□□□ 0.05
VPS35-210ENST00000568784 ZBTB12Q9Y330 459 aaPredicted RBP15.34■□□□□ 0.05
VPS35-210ENST00000568784 A0A1W2PPM1 405 aa15.34■□□□□ 0.05
VPS35-210ENST00000568784 FSCN2O14926 492 aa15.34■□□□□ 0.05
VPS35-210ENST00000568784 PECAM1P16284 738 aaPredicted RBP15.34■□□□□ 0.05
VPS35-210ENST00000568784 SLC15A2Q16348 729 aa15.34■□□□□ 0.05
VPS35-210ENST00000568784 CLEC16AQ2KHT3 1053 aa15.34■□□□□ 0.05
VPS35-210ENST00000568784 MTDHQ86UE4 582 aaKnown RBP15.34■□□□□ 0.05
VPS35-210ENST00000568784 BBOF1Q8ND07 529 aa15.34■□□□□ 0.05
VPS35-210ENST00000568784 TTC8Q8TAM2 541 aa15.34■□□□□ 0.05
VPS35-210ENST00000568784 CYP1A2P05177 515 aa15.33■□□□□ 0.05
VPS35-210ENST00000568784 TAF1BQ53T94 588 aaPredicted RBP15.33■□□□□ 0.05
VPS35-210ENST00000568784 MFSD5Q6N075 450 aa15.33■□□□□ 0.05
VPS35-210ENST00000568784 MIS18BP1Q6P0N0 1132 aa15.33■□□□□ 0.05
VPS35-210ENST00000568784 CDAN1Q8IWY9 1227 aa15.33■□□□□ 0.05
VPS35-210ENST00000568784 UBE4BO95155 1302 aa15.33■□□□□ 0.05
VPS35-210ENST00000568784 NPR1P16066 1061 aa15.33■□□□□ 0.04
VPS35-210ENST00000568784 RASSF2P50749 326 aa15.33■□□□□ 0.04
VPS35-210ENST00000568784 WDR4P57081 412 aaKnown RBP15.33■□□□□ 0.04
VPS35-210ENST00000568784 IRX4P78413 519 aa15.33■□□□□ 0.04
VPS35-210ENST00000568784 MTFR1Q15390 333 aa15.33■□□□□ 0.04
VPS35-210ENST00000568784 RHPN2Q8IUC4 686 aa15.33■□□□□ 0.04
VPS35-210ENST00000568784 RSAD2Q8WXG1 361 aa15.33■□□□□ 0.04
VPS35-210ENST00000568784 NAF1Q96HR8 494 aaKnown RBP15.33■□□□□ 0.04
VPS35-210ENST00000568784 RMDN3Q96TC7 470 aa15.33■□□□□ 0.04
VPS35-210ENST00000568784 PCSK1NQ9UHG2 260 aa15.33■□□□□ 0.04
VPS35-210ENST00000568784 SMCHD1A6NHR9 2005 aa15.33■□□□□ 0.04
VPS35-210ENST00000568784 DDX60LQ5H9U9 1706 aaKnown RBP15.33■□□□□ 0.04
VPS35-210ENST00000568784 UNC5CO95185 931 aa15.33■□□□□ 0.04
VPS35-210ENST00000568784 CFHP08603 1231 aa15.33■□□□□ 0.04
VPS35-210ENST00000568784 CHRNA5P30532 468 aa15.33■□□□□ 0.04
VPS35-210ENST00000568784 SSTR1P30872 391 aa15.33■□□□□ 0.04
VPS35-210ENST00000568784 YWHAGP61981 247 aaKnown RBP eCLIP15.33■□□□□ 0.04
VPS35-210ENST00000568784 GMCL1P1Q8NEA9 526 aa15.33■□□□□ 0.04
VPS35-210ENST00000568784 MAML1Q92585 1016 aa15.33■□□□□ 0.04
VPS35-210ENST00000568784 ZBTB10Q96DT7 871 aa15.33■□□□□ 0.04
VPS35-210ENST00000568784 TAAR1Q96RJ0 339 aa15.33■□□□□ 0.04
VPS35-210ENST00000568784 SERPINA10Q9UK55 444 aa15.33■□□□□ 0.04
VPS35-210ENST00000568784 KAT6AQ92794 2004 aa15.33■□□□□ 0.04
VPS35-210ENST00000568784 HLA-DRAP01903 254 aa15.33■□□□□ 0.04
VPS35-210ENST00000568784 CCNHP51946 323 aaPredicted RBP15.33■□□□□ 0.04
VPS35-210ENST00000568784 KCNT1Q5JUK3 1230 aa15.33■□□□□ 0.04
VPS35-210ENST00000568784 CRELD2Q6UXH1 353 aaPredicted RBP15.33■□□□□ 0.04
VPS35-210ENST00000568784 OLIG1Q8TAK6 271 aa15.33■□□□□ 0.04
VPS35-210ENST00000568784 MCEEQ96PE7 176 aa15.33■□□□□ 0.04
VPS35-210ENST00000568784 TMEM39BQ9GZU3 492 aa15.33■□□□□ 0.04
VPS35-210ENST00000568784 NKX1-2Q9UD57 310 aaPredicted RBP15.33■□□□□ 0.04
VPS35-210ENST00000568784 OSTNP61366 133 aa15.32■□□□□ 0.04
VPS35-210ENST00000568784 CAV1Q03135 178 aa15.32■□□□□ 0.04
VPS35-210ENST00000568784 SWSAP1Q6NVH7 229 aa15.32■□□□□ 0.04
VPS35-210ENST00000568784 CENPUQ71F23 418 aa15.32■□□□□ 0.04
VPS35-210ENST00000568784 KCND2Q9NZV8 630 aa15.32■□□□□ 0.04
VPS35-210ENST00000568784 POLRMTO00411 1230 aaKnown RBP15.32■□□□□ 0.04
VPS35-210ENST00000568784 DCTN3O75935 186 aa15.32■□□□□ 0.04
VPS35-210ENST00000568784 BAG2O95816 211 aa15.32■□□□□ 0.04
VPS35-210ENST00000568784 KITP10721 976 aa15.32■□□□□ 0.04
VPS35-210ENST00000568784 POLGP54098 1239 aaPredicted RBP15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms