RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 RFPL2O75678 378 aa16.33■□□□□ 0.2
VPS39-210ENST00000568357 C1RP00736 705 aa16.33■□□□□ 0.2
VPS39-210ENST00000568357 NFICP08651 508 aa16.33■□□□□ 0.2
VPS39-210ENST00000568357 LRPAP1P30533 357 aa16.33■□□□□ 0.2
VPS39-210ENST00000568357 FOXK2Q01167 660 aa16.33■□□□□ 0.2
VPS39-210ENST00000568357 CREMQ03060 361 aa16.33■□□□□ 0.2
VPS39-210ENST00000568357 EHHADHQ08426 723 aa16.33■□□□□ 0.2
VPS39-210ENST00000568357 UNC13DQ70J99 1090 aa16.33■□□□□ 0.2
VPS39-210ENST00000568357 EPM2AIP1Q7L775 607 aaPredicted RBP16.33■□□□□ 0.2
VPS39-210ENST00000568357 BMP8AQ7Z5Y6 402 aa16.33■□□□□ 0.2
VPS39-210ENST00000568357 GPR149Q86SP6 731 aa16.33■□□□□ 0.2
VPS39-210ENST00000568357 CD302Q8IX05 232 aa16.33■□□□□ 0.2
VPS39-210ENST00000568357 TSPAN18Q96SJ8 248 aa16.33■□□□□ 0.2
VPS39-210ENST00000568357 PYM1Q9BRP8 204 aaKnown RBP16.33■□□□□ 0.2
VPS39-210ENST00000568357 CBWD1Q9BRT8 395 aa16.33■□□□□ 0.2
VPS39-210ENST00000568357 NUB1Q9Y5A7 615 aa16.33■□□□□ 0.2
VPS39-210ENST00000568357 FAM237AA0A1B0GTK4 181 aa16.32■□□□□ 0.2
VPS39-210ENST00000568357 CCDC195A0A1B0GUA6 201 aa16.32■□□□□ 0.2
VPS39-210ENST00000568357 TMEM221A6NGB7 291 aa16.32■□□□□ 0.2
VPS39-210ENST00000568357 SPDYE4A6NLX3 237 aa16.32■□□□□ 0.2
VPS39-210ENST00000568357 M0R296 226 aa16.32■□□□□ 0.2
VPS39-210ENST00000568357 PPEF2O14830 753 aa16.32■□□□□ 0.2
VPS39-210ENST00000568357 OR1D2P34982 312 aa16.32■□□□□ 0.2
VPS39-210ENST00000568357 MTHFRP42898 656 aa16.32■□□□□ 0.2
VPS39-210ENST00000568357 NDUFA8P51970 172 aa16.32■□□□□ 0.2
VPS39-210ENST00000568357 WNT7BP56706 349 aa16.32■□□□□ 0.2
VPS39-210ENST00000568357 POU5F1Q01860 360 aaKnown RBP16.32■□□□□ 0.2
VPS39-210ENST00000568357 FAM26FQ5R3K3 315 aa16.32■□□□□ 0.2
VPS39-210ENST00000568357 SPATA1Q5VX52 437 aa16.32■□□□□ 0.2
VPS39-210ENST00000568357 PDXDC1Q6P996 788 aa16.32■□□□□ 0.2
VPS39-210ENST00000568357 CEP57L1Q8IYX8 460 aa16.32■□□□□ 0.2
VPS39-210ENST00000568357 KREMEN2Q8NCW0 462 aa16.32■□□□□ 0.2
VPS39-210ENST00000568357 CMASQ8NFW8 434 aaPredicted RBP16.32■□□□□ 0.2
VPS39-210ENST00000568357 ZNF507Q8TCN5 953 aa16.32■□□□□ 0.2
VPS39-210ENST00000568357 HDAC7Q8WUI4 952 aa16.32■□□□□ 0.2
VPS39-210ENST00000568357 PBXIP1Q96AQ6 731 aa16.32■□□□□ 0.2
VPS39-210ENST00000568357 SAAL1Q96ER3 474 aa16.32■□□□□ 0.2
VPS39-210ENST00000568357 SUSD3Q96L08 255 aa16.32■□□□□ 0.2
VPS39-210ENST00000568357 RIPOR3Q96MK2 946 aa16.32■□□□□ 0.2
VPS39-210ENST00000568357 NECTIN4Q96NY8 510 aa16.32■□□□□ 0.2
VPS39-210ENST00000568357 FAM213AQ9BRX8 229 aa16.32■□□□□ 0.2
VPS39-210ENST00000568357 PLEKHA4Q9H4M7 779 aa16.32■□□□□ 0.2
VPS39-210ENST00000568357 PCIF1Q9H4Z3 704 aa16.32■□□□□ 0.2
VPS39-210ENST00000568357 ASB7Q9H672 318 aa16.32■□□□□ 0.2
VPS39-210ENST00000568357 TMEM206Q9H813 350 aa16.32■□□□□ 0.2
VPS39-210ENST00000568357 MTRRQ9UBK8 725 aa16.32■□□□□ 0.2
VPS39-210ENST00000568357 BACE2Q9Y5Z0 518 aa16.32■□□□□ 0.2
VPS39-210ENST00000568357 PVALEFA0A1B0GWK0 134 aa16.31■□□□□ 0.2
VPS39-210ENST00000568357 GOLGA8IPA6NC78 632 aa16.31■□□□□ 0.2
VPS39-210ENST00000568357 GOLGA8JA6NMD2 632 aa16.31■□□□□ 0.2
VPS39-210ENST00000568357 SYN3O14994 580 aa16.31■□□□□ 0.2
VPS39-210ENST00000568357 GARTP22102 1010 aa16.31■□□□□ 0.2
VPS39-210ENST00000568357 SP100P23497 879 aaPredicted RBP16.31■□□□□ 0.2
VPS39-210ENST00000568357 MCM4P33991 863 aa16.31■□□□□ 0.2
VPS39-210ENST00000568357 NUCB2P80303 420 aa16.31■□□□□ 0.2
VPS39-210ENST00000568357 RAB33AQ14088 237 aa16.31■□□□□ 0.2
VPS39-210ENST00000568357 MRPL58Q14197 206 aaKnown RBP16.31■□□□□ 0.2
VPS39-210ENST00000568357 TMEM132DQ14C87 1099 aa16.31■□□□□ 0.2
VPS39-210ENST00000568357 VARS2Q5ST30 1063 aaKnown RBP16.31■□□□□ 0.2
VPS39-210ENST00000568357 TRIM67Q6ZTA4 783 aa16.31■□□□□ 0.2
VPS39-210ENST00000568357 ANKS3Q6ZW76 656 aa16.31■□□□□ 0.2
VPS39-210ENST00000568357 SCFD1Q8WVM8 642 aa16.31■□□□□ 0.2
VPS39-210ENST00000568357 ZNF707Q96C28 371 aaPredicted RBP16.31■□□□□ 0.2
VPS39-210ENST00000568357 DPP7Q9UHL4 492 aa16.31■□□□□ 0.2
VPS39-210ENST00000568357 DERAQ9Y315 318 aa16.31■□□□□ 0.2
VPS39-210ENST00000568357 CDY1Q9Y6F8 540 aa16.31■□□□□ 0.2
VPS39-210ENST00000568357 TRIP11Q15643 1979 aa16.3■□□□□ 0.2
VPS39-210ENST00000568357 A0A1W2PQ27 194 aa16.3■□□□□ 0.2
VPS39-210ENST00000568357 A0A1W2PQ64 194 aa16.3■□□□□ 0.2
VPS39-210ENST00000568357 A0A1W2PQD8 194 aa16.3■□□□□ 0.2
VPS39-210ENST00000568357 PIRO00625 290 aa16.3■□□□□ 0.2
VPS39-210ENST00000568357 EIF3DO15371 548 aaKnown RBP eCLIP16.3■□□□□ 0.2
VPS39-210ENST00000568357 TGFB1I1O43294 461 aa16.3■□□□□ 0.2
VPS39-210ENST00000568357 XPOTO43592 962 aaKnown RBP16.3■□□□□ 0.2
VPS39-210ENST00000568357 KLRC4O43908 158 aa16.3■□□□□ 0.2
VPS39-210ENST00000568357 TBC1D4O60343 1298 aa16.3■□□□□ 0.2
VPS39-210ENST00000568357 PAPLNO95428 1278 aa16.3■□□□□ 0.2
VPS39-210ENST00000568357 SYKP43405 635 aa16.3■□□□□ 0.2
VPS39-210ENST00000568357 AARSP49588 968 aaKnown RBP eCLIP16.3■□□□□ 0.2
VPS39-210ENST00000568357 VCPP55072 806 aaKnown RBP16.3■□□□□ 0.2
VPS39-210ENST00000568357 C9orf57Q5W0N0 161 aa16.3■□□□□ 0.2
VPS39-210ENST00000568357 C15orf39Q6ZRI6 1047 aa16.3■□□□□ 0.2
VPS39-210ENST00000568357 STXBP4Q6ZWJ1 553 aa16.3■□□□□ 0.2
VPS39-210ENST00000568357 SUGP1Q8IWZ8 645 aaKnown RBP16.3■□□□□ 0.2
VPS39-210ENST00000568357 BEST2Q8NFU1 509 aa16.3■□□□□ 0.2
VPS39-210ENST00000568357 PRRX2Q99811 253 aa16.3■□□□□ 0.2
VPS39-210ENST00000568357 GOLPH3LQ9H4A5 285 aa16.3■□□□□ 0.2
VPS39-210ENST00000568357 SLC39A2Q9NP94 309 aa16.3■□□□□ 0.2
VPS39-210ENST00000568357 TSHZ2Q9NRE2 1034 aa16.3■□□□□ 0.2
VPS39-210ENST00000568357 USP25Q9UHP3 1055 aa16.3■□□□□ 0.2
VPS39-210ENST00000568357 FBXW11Q9UKB1 542 aa16.3■□□□□ 0.2
VPS39-210ENST00000568357 C2CD2Q9Y426 696 aa16.3■□□□□ 0.2
VPS39-210ENST00000568357 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.3■□□□□ 0.2
VPS39-210ENST00000568357 ANO9A1A5B4 782 aa16.29■□□□□ 0.2
VPS39-210ENST00000568357 M0QZQ0 153 aa16.29■□□□□ 0.2
VPS39-210ENST00000568357 SPTLC1O15269 473 aa16.29■□□□□ 0.2
VPS39-210ENST00000568357 EXTL3O43909 919 aa16.29■□□□□ 0.2
VPS39-210ENST00000568357 ZMYND10O75800 440 aa16.29■□□□□ 0.2
VPS39-210ENST00000568357 LDHAP00338 332 aaKnown RBP16.29■□□□□ 0.2
VPS39-210ENST00000568357 LILRA4P59901 499 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms