RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 MYCT1Q8N699 235 aa17.52■□□□□ 0.4
CLN3-229ENST00000567963 APPL2Q8NEU8 664 aa17.52■□□□□ 0.4
CLN3-229ENST00000567963 ING5Q8WYH8 240 aa17.52■□□□□ 0.4
CLN3-229ENST00000567963 SHDQ96IW2 340 aa17.52■□□□□ 0.4
CLN3-229ENST00000567963 CYP4F11Q9HBI6 524 aa17.52■□□□□ 0.4
CLN3-229ENST00000567963 GDE1Q9NZC3 331 aa17.52■□□□□ 0.4
CLN3-229ENST00000567963 DLGAP2Q9P1A6 1054 aa17.52■□□□□ 0.4
CLN3-229ENST00000567963 TBX20Q9UMR3 447 aa17.52■□□□□ 0.4
CLN3-229ENST00000567963 PIGRP01833 764 aa17.51■□□□□ 0.39
CLN3-229ENST00000567963 PLCG1P19174 1290 aa17.51■□□□□ 0.39
CLN3-229ENST00000567963 LRPAP1P30533 357 aa17.51■□□□□ 0.39
CLN3-229ENST00000567963 LIG4P49917 911 aa17.51■□□□□ 0.39
CLN3-229ENST00000567963 SNW1Q13573 536 aaKnown RBP17.51■□□□□ 0.39
CLN3-229ENST00000567963 MCM6Q14566 821 aa17.51■□□□□ 0.39
CLN3-229ENST00000567963 KARSQ15046 597 aaKnown RBP17.51■□□□□ 0.39
CLN3-229ENST00000567963 SF3A1Q15459 793 aaKnown RBP17.51■□□□□ 0.39
CLN3-229ENST00000567963 KYAT1Q16773 422 aa17.51■□□□□ 0.39
CLN3-229ENST00000567963 SPECC1Q5M775 1068 aa17.51■□□□□ 0.39
CLN3-229ENST00000567963 ZNF280DQ6N043 979 aa17.51■□□□□ 0.39
CLN3-229ENST00000567963 POTEHQ6S545 545 aa17.51■□□□□ 0.39
CLN3-229ENST00000567963 NKD2Q969F2 451 aaPredicted RBP17.51■□□□□ 0.39
CLN3-229ENST00000567963 MCRS1Q96EZ8 462 aa17.51■□□□□ 0.39
CLN3-229ENST00000567963 KIF12Q96FN5 646 aa17.51■□□□□ 0.39
CLN3-229ENST00000567963 KXD1Q9BQD3 176 aa17.51■□□□□ 0.39
CLN3-229ENST00000567963 PARVGQ9HBI0 331 aa17.51■□□□□ 0.39
CLN3-229ENST00000567963 PCDHB8Q9UN66 801 aa17.51■□□□□ 0.39
CLN3-229ENST00000567963 LACTBL1A8MY62 500 aa17.5■□□□□ 0.39
CLN3-229ENST00000567963 K7ENM7 598 aa17.5■□□□□ 0.39
CLN3-229ENST00000567963 M0QZQ0 153 aa17.5■□□□□ 0.39
CLN3-229ENST00000567963 HNRNPDLO14979 420 aaKnown RBP17.5■□□□□ 0.39
CLN3-229ENST00000567963 TRAK2O60296 914 aa17.5■□□□□ 0.39
CLN3-229ENST00000567963 FAM189A1O60320 539 aa17.5■□□□□ 0.39
CLN3-229ENST00000567963 FAM13AO94988 1023 aa17.5■□□□□ 0.39
CLN3-229ENST00000567963 CYP3A5P20815 502 aa17.5■□□□□ 0.39
CLN3-229ENST00000567963 MARCKSP29966 332 aaPredicted RBP17.5■□□□□ 0.39
CLN3-229ENST00000567963 PPP2R3AQ06190 1150 aa17.5■□□□□ 0.39
CLN3-229ENST00000567963 ADCY1Q08828 1119 aa17.5■□□□□ 0.39
CLN3-229ENST00000567963 SLC44A4Q53GD3 710 aa17.5■□□□□ 0.39
CLN3-229ENST00000567963 PRSS36Q5K4E3 855 aa17.5■□□□□ 0.39
CLN3-229ENST00000567963 PJA1Q8NG27 643 aa17.5■□□□□ 0.39
CLN3-229ENST00000567963 RAD54LQ92698 747 aa17.5■□□□□ 0.39
CLN3-229ENST00000567963 CORO1BQ9BR76 489 aa17.5■□□□□ 0.39
CLN3-229ENST00000567963 MAFFQ9ULX9 164 aa17.5■□□□□ 0.39
CLN3-229ENST00000567963 UBQLN1Q9UMX0 589 aaKnown RBP17.5■□□□□ 0.39
CLN3-229ENST00000567963 INSL5Q9Y5Q6 135 aa17.5■□□□□ 0.39
CLN3-229ENST00000567963 GTF3C5Q9Y5Q8 519 aaPredicted RBP17.5■□□□□ 0.39
CLN3-229ENST00000567963 OGTO15294 1046 aa17.5■□□□□ 0.39
CLN3-229ENST00000567963 ECI2O75521 394 aa17.5■□□□□ 0.39
CLN3-229ENST00000567963 OAZ2O95190 189 aa17.5■□□□□ 0.39
CLN3-229ENST00000567963 ADRB2P07550 413 aa17.5■□□□□ 0.39
CLN3-229ENST00000567963 DDIT3P35638 169 aa17.5■□□□□ 0.39
CLN3-229ENST00000567963 PFKPQ01813 784 aa17.5■□□□□ 0.39
CLN3-229ENST00000567963 ENOX2Q16206 610 aaKnown RBP17.5■□□□□ 0.39
CLN3-229ENST00000567963 ZBTB41Q5SVQ8 909 aa17.5■□□□□ 0.39
CLN3-229ENST00000567963 RASSF8Q8NHQ8 419 aa17.5■□□□□ 0.39
CLN3-229ENST00000567963 TSPAN18Q96SJ8 248 aa17.5■□□□□ 0.39
CLN3-229ENST00000567963 FIZ1Q96SL8 496 aa17.5■□□□□ 0.39
CLN3-229ENST00000567963 DDX23Q9BUQ8 820 aaKnown RBP17.5■□□□□ 0.39
CLN3-229ENST00000567963 FOXQ1Q9C009 403 aa17.5■□□□□ 0.39
CLN3-229ENST00000567963 RPF1Q9H9Y2 349 aaKnown RBP17.5■□□□□ 0.39
CLN3-229ENST00000567963 AFF4Q9UHB7 1163 aaKnown RBP17.5■□□□□ 0.39
CLN3-229ENST00000567963 A0A0B4J269 797 aa17.49■□□□□ 0.39
CLN3-229ENST00000567963 KANSL1LA0AUZ9 987 aa17.49■□□□□ 0.39
CLN3-229ENST00000567963 MICAL2O94851 1124 aa17.49■□□□□ 0.39
CLN3-229ENST00000567963 KRT18P05783 430 aaKnown RBP17.49■□□□□ 0.39
CLN3-229ENST00000567963 GLULP15104 373 aa17.49■□□□□ 0.39
CLN3-229ENST00000567963 CEBPBP17676 345 aa17.49■□□□□ 0.39
CLN3-229ENST00000567963 AARSP49588 968 aaKnown RBP eCLIP17.49■□□□□ 0.39
CLN3-229ENST00000567963 GTF2BQ00403 316 aa17.49■□□□□ 0.39
CLN3-229ENST00000567963 PRKCQQ04759 706 aa17.49■□□□□ 0.39
CLN3-229ENST00000567963 YWHAHQ04917 246 aaPredicted RBP17.49■□□□□ 0.39
CLN3-229ENST00000567963 CUL4AQ13619 759 aa17.49■□□□□ 0.39
CLN3-229ENST00000567963 MLF2Q15773 248 aaPredicted RBP17.49■□□□□ 0.39
CLN3-229ENST00000567963 RNF19BQ6ZMZ0 732 aa17.49■□□□□ 0.39
CLN3-229ENST00000567963 LARP4BQ92615 738 aaKnown RBP17.49■□□□□ 0.39
CLN3-229ENST00000567963 TCEAL4Q96EI5 215 aa17.49■□□□□ 0.39
CLN3-229ENST00000567963 PLA2G2FQ9BZM2 168 aa17.49■□□□□ 0.39
CLN3-229ENST00000567963 CCSER1Q9C0I3 900 aa17.49■□□□□ 0.39
CLN3-229ENST00000567963 TIMM13Q9Y5L4 95 aaPredicted RBP17.49■□□□□ 0.39
CLN3-229ENST00000567963 ZNF197O14709 1029 aa17.48■□□□□ 0.39
CLN3-229ENST00000567963 XPOTO43592 962 aaKnown RBP17.48■□□□□ 0.39
CLN3-229ENST00000567963 CPB1P15086 417 aa17.48■□□□□ 0.39
CLN3-229ENST00000567963 ABCD1P33897 745 aa17.48■□□□□ 0.39
CLN3-229ENST00000567963 CCR2P41597 374 aa17.48■□□□□ 0.39
CLN3-229ENST00000567963 TANGO2Q6ICL3 276 aa17.48■□□□□ 0.39
CLN3-229ENST00000567963 SLC39A4Q6P5W5 647 aa17.48■□□□□ 0.39
CLN3-229ENST00000567963 C1orf210Q8IVY1 113 aa17.48■□□□□ 0.39
CLN3-229ENST00000567963 ELMOD1Q8N336 334 aa17.48■□□□□ 0.39
CLN3-229ENST00000567963 BEST2Q8NFU1 509 aa17.48■□□□□ 0.39
CLN3-229ENST00000567963 ZNF512Q96ME7 567 aaPredicted RBP17.48■□□□□ 0.39
CLN3-229ENST00000567963 MSTO1Q9BUK6 570 aa17.48■□□□□ 0.39
CLN3-229ENST00000567963 OXCT2Q9BYC2 517 aaPredicted RBP17.48■□□□□ 0.39
CLN3-229ENST00000567963 ZHX3Q9H4I2 956 aa17.48■□□□□ 0.39
CLN3-229ENST00000567963 CEP72Q9P209 647 aa17.48■□□□□ 0.39
CLN3-229ENST00000567963 CPSF3Q9UKF6 684 aaKnown RBP17.48■□□□□ 0.39
CLN3-229ENST00000567963 PTPRZ1P23471 2315 aaPredicted RBP17.47■□□□□ 0.39
CLN3-229ENST00000567963 VPS37CA5D8V6 355 aaPredicted RBP17.47■□□□□ 0.39
CLN3-229ENST00000567963 LRRN2O75325 713 aa17.47■□□□□ 0.39
CLN3-229ENST00000567963 TBCAO75347 108 aaKnown RBP17.47■□□□□ 0.39
CLN3-229ENST00000567963 NMT1P30419 496 aaKnown RBP17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms