RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 LDHAP00338 332 aaKnown RBP20.31■□□□□ 0.84
CLN3-227ENST00000567495 POU2F2P09086 479 aa20.31■□□□□ 0.84
CLN3-227ENST00000567495 GARTP22102 1010 aa20.31■□□□□ 0.84
CLN3-227ENST00000567495 SP100P23497 879 aaPredicted RBP20.31■□□□□ 0.84
CLN3-227ENST00000567495 ADSSP30520 456 aa20.31■□□□□ 0.84
CLN3-227ENST00000567495 ASIC1P78348 528 aa20.31■□□□□ 0.84
CLN3-227ENST00000567495 ZXDAP98168 799 aa20.31■□□□□ 0.84
CLN3-227ENST00000567495 SPAG1Q07617 926 aa20.31■□□□□ 0.84
CLN3-227ENST00000567495 MRPL58Q14197 206 aaKnown RBP20.31■□□□□ 0.84
CLN3-227ENST00000567495 TMEM132DQ14C87 1099 aa20.31■□□□□ 0.84
CLN3-227ENST00000567495 NT5DC4Q86YG4 428 aa20.31■□□□□ 0.84
CLN3-227ENST00000567495 KCNH3Q9ULD8 1083 aa20.31■□□□□ 0.84
CLN3-227ENST00000567495 MAFFQ9ULX9 164 aa20.31■□□□□ 0.84
CLN3-227ENST00000567495 PCDHB8Q9UN66 801 aa20.31■□□□□ 0.84
CLN3-227ENST00000567495 ARHGEF37A1IGU5 675 aa20.3■□□□□ 0.84
CLN3-227ENST00000567495 TISP43B9A030 160 aa20.3■□□□□ 0.84
CLN3-227ENST00000567495 XYLBO75191 536 aa20.3■□□□□ 0.84
CLN3-227ENST00000567495 C8AP07357 584 aa20.3■□□□□ 0.84
CLN3-227ENST00000567495 MYBP10242 640 aa20.3■□□□□ 0.84
CLN3-227ENST00000567495 AARSP49588 968 aaKnown RBP eCLIP20.3■□□□□ 0.84
CLN3-227ENST00000567495 CASP5P51878 434 aa20.3■□□□□ 0.84
CLN3-227ENST00000567495 KCNA1Q09470 495 aa20.3■□□□□ 0.84
CLN3-227ENST00000567495 PPM1LQ5SGD2 360 aa20.3■□□□□ 0.84
CLN3-227ENST00000567495 JADE1Q6IE81 842 aa20.3■□□□□ 0.84
CLN3-227ENST00000567495 ZNF280DQ6N043 979 aa20.3■□□□□ 0.84
CLN3-227ENST00000567495 CEP57L1Q8IYX8 460 aa20.3■□□□□ 0.84
CLN3-227ENST00000567495 ZNF461Q8TAF7 563 aa20.3■□□□□ 0.84
CLN3-227ENST00000567495 SPATA32Q96LK8 384 aa20.3■□□□□ 0.84
CLN3-227ENST00000567495 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP20.3■□□□□ 0.84
CLN3-227ENST00000567495 CLUHO75153 1309 aa20.29■□□□□ 0.84
CLN3-227ENST00000567495 FAM86C2PA6NEL3 165 aa20.29■□□□□ 0.84
CLN3-227ENST00000567495 M0QZQ0 153 aa20.29■□□□□ 0.84
CLN3-227ENST00000567495 EIF3DO15371 548 aaKnown RBP eCLIP20.29■□□□□ 0.84
CLN3-227ENST00000567495 TBC1D4O60343 1298 aa20.29■□□□□ 0.84
CLN3-227ENST00000567495 COL9A1P20849 921 aa20.29■□□□□ 0.84
CLN3-227ENST00000567495 CMA1P23946 247 aa20.29■□□□□ 0.84
CLN3-227ENST00000567495 CTXN3Q4LDR2 81 aa20.29■□□□□ 0.84
CLN3-227ENST00000567495 TPGS2Q68CL5 300 aa20.29■□□□□ 0.84
CLN3-227ENST00000567495 TRIM67Q6ZTA4 783 aa20.29■□□□□ 0.84
CLN3-227ENST00000567495 UBALD2Q8IYN6 164 aa20.29■□□□□ 0.84
CLN3-227ENST00000567495 LEO1Q8WVC0 666 aaPredicted RBP20.29■□□□□ 0.84
CLN3-227ENST00000567495 SCAND2PQ9GZW5 306 aaPredicted RBP20.29■□□□□ 0.84
CLN3-227ENST00000567495 USP25Q9UHP3 1055 aa20.29■□□□□ 0.84
CLN3-227ENST00000567495 ZDHHC9Q9Y397 364 aa20.29■□□□□ 0.84
CLN3-227ENST00000567495 PVALEFA0A1B0GWK0 134 aa20.28■□□□□ 0.84
CLN3-227ENST00000567495 OAZ2O95190 189 aa20.28■□□□□ 0.84
CLN3-227ENST00000567495 SLFN14P0C7P3 912 aa20.28■□□□□ 0.84
CLN3-227ENST00000567495 ELF1P32519 619 aa20.28■□□□□ 0.84
CLN3-227ENST00000567495 SIGLEC14Q08ET2 396 aa20.28■□□□□ 0.84
CLN3-227ENST00000567495 MTMR3Q13615 1198 aa20.28■□□□□ 0.84
CLN3-227ENST00000567495 FAM26FQ5R3K3 315 aa20.28■□□□□ 0.84
CLN3-227ENST00000567495 CRELD2Q6UXH1 353 aaPredicted RBP20.28■□□□□ 0.84
CLN3-227ENST00000567495 RSPO2Q6UXX9 243 aaPredicted RBP20.28■□□□□ 0.84
CLN3-227ENST00000567495 UNC13DQ70J99 1090 aa20.28■□□□□ 0.84
CLN3-227ENST00000567495 USP37Q86T82 979 aa20.28■□□□□ 0.84
CLN3-227ENST00000567495 FAM213AQ9BRX8 229 aa20.28■□□□□ 0.84
CLN3-227ENST00000567495 LIMD1Q9UGP4 676 aa20.28■□□□□ 0.84
CLN3-227ENST00000567495 FBXL5Q9UKA1 691 aa20.28■□□□□ 0.84
CLN3-227ENST00000567495 SORCS3Q9UPU3 1222 aa20.28■□□□□ 0.84
CLN3-227ENST00000567495 EXTL3O43909 919 aa20.27■□□□□ 0.84
CLN3-227ENST00000567495 PRPF6O94906 941 aaKnown RBP20.27■□□□□ 0.84
CLN3-227ENST00000567495 ABLIM3O94929 683 aa20.27■□□□□ 0.84
CLN3-227ENST00000567495 NFICP08651 508 aa20.27■□□□□ 0.84
CLN3-227ENST00000567495 LILRA4P59901 499 aa20.27■□□□□ 0.84
CLN3-227ENST00000567495 SNRPFP62306 86 aaKnown RBP20.27■□□□□ 0.84
CLN3-227ENST00000567495 ROR1Q01973 937 aa20.27■□□□□ 0.84
CLN3-227ENST00000567495 YWHAHQ04917 246 aaPredicted RBP20.27■□□□□ 0.84
CLN3-227ENST00000567495 C9orf57Q5W0N0 161 aa20.27■□□□□ 0.84
CLN3-227ENST00000567495 DSTYKQ6XUX3 929 aa20.27■□□□□ 0.84
CLN3-227ENST00000567495 BMP8AQ7Z5Y6 402 aa20.27■□□□□ 0.84
CLN3-227ENST00000567495 SLC7A14Q8TBB6 771 aa20.27■□□□□ 0.84
CLN3-227ENST00000567495 IGSF9Q9P2J2 1179 aa20.27■□□□□ 0.84
CLN3-227ENST00000567495 HCN4Q9Y3Q4 1203 aa20.27■□□□□ 0.84
CLN3-227ENST00000567495 ARIH1Q9Y4X5 557 aaPredicted RBP20.27■□□□□ 0.84
CLN3-227ENST00000567495 ZFP37Q9Y6Q3 630 aaPredicted RBP20.27■□□□□ 0.84
CLN3-227ENST00000567495 CITO14578 2027 aa20.27■□□□□ 0.84
CLN3-227ENST00000567495 ANO9A1A5B4 782 aa20.26■□□□□ 0.83
CLN3-227ENST00000567495 PIRO00625 290 aa20.26■□□□□ 0.83
CLN3-227ENST00000567495 ATF2P15336 505 aa20.26■□□□□ 0.83
CLN3-227ENST00000567495 TYMPP19971 482 aa20.26■□□□□ 0.83
CLN3-227ENST00000567495 ARMCX5Q6P1M9 558 aa20.26■□□□□ 0.83
CLN3-227ENST00000567495 BRSK2Q8IWQ3 736 aa20.26■□□□□ 0.83
CLN3-227ENST00000567495 FEZF2Q8TBJ5 459 aa20.26■□□□□ 0.83
CLN3-227ENST00000567495 CACTINQ8WUQ7 758 aaKnown RBP20.26■□□□□ 0.83
CLN3-227ENST00000567495 NXPE3Q969Y0 559 aa20.26■□□□□ 0.83
CLN3-227ENST00000567495 MFSD14AQ96MC6 490 aa20.26■□□□□ 0.83
CLN3-227ENST00000567495 FGFBP2Q9BYJ0 223 aa20.26■□□□□ 0.83
CLN3-227ENST00000567495 IKZF4Q9H2S9 585 aa20.26■□□□□ 0.83
CLN3-227ENST00000567495 KIAA1586Q9HCI6 787 aa20.26■□□□□ 0.83
CLN3-227ENST00000567495 DPP3Q9NY33 737 aa20.26■□□□□ 0.83
CLN3-227ENST00000567495 EPS15L1Q9UBC2 864 aa20.26■□□□□ 0.83
CLN3-227ENST00000567495 UBE4BO95155 1302 aa20.26■□□□□ 0.83
CLN3-227ENST00000567495 TMEM221A6NGB7 291 aa20.25■□□□□ 0.83
CLN3-227ENST00000567495 OR6C75A6NL08 312 aa20.25■□□□□ 0.83
CLN3-227ENST00000567495 M0R296 226 aa20.25■□□□□ 0.83
CLN3-227ENST00000567495 PRRG1O14668 218 aa20.25■□□□□ 0.83
CLN3-227ENST00000567495 MYL1P05976 194 aa20.25■□□□□ 0.83
CLN3-227ENST00000567495 GBP2P32456 591 aaPredicted RBP20.25■□□□□ 0.83
CLN3-227ENST00000567495 GUCY2FP51841 1108 aa20.25■□□□□ 0.83
CLN3-227ENST00000567495 EHHADHQ08426 723 aa20.25■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms