RNA–Protein interactions for RNA: ENST00000567250.5

SF3B3-208, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 3

Gene SF3B3, Length 1,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-208ENST00000567250 CSGALNACT2Q8N6G5 542 aa13.15□□□□□ -0.3
SF3B3-208ENST00000567250 TMC2Q8TDI7 906 aa13.15□□□□□ -0.3
SF3B3-208ENST00000567250 MICAL1Q8TDZ2 1067 aa13.15□□□□□ -0.3
SF3B3-208ENST00000567250 BCL7CQ8WUZ0 217 aaPredicted RBP13.15□□□□□ -0.3
SF3B3-208ENST00000567250 MTMR12Q9C0I1 747 aa13.15□□□□□ -0.3
SF3B3-208ENST00000567250 NSUN3Q9H649 340 aaKnown RBP13.15□□□□□ -0.3
SF3B3-208ENST00000567250 METTL14Q9HCE5 456 aaKnown RBP13.15□□□□□ -0.3
SF3B3-208ENST00000567250 INTS13Q9NVM9 706 aa13.15□□□□□ -0.3
SF3B3-208ENST00000567250 ANO10Q9NW15 660 aa13.15□□□□□ -0.3
SF3B3-208ENST00000567250 TMEM63CQ9P1W3 806 aa13.15□□□□□ -0.3
SF3B3-208ENST00000567250 SCN1AP35498 2009 aa13.14□□□□□ -0.31
SF3B3-208ENST00000567250 SYN3O14994 580 aa13.14□□□□□ -0.31
SF3B3-208ENST00000567250 STX10O60499 249 aa13.14□□□□□ -0.31
SF3B3-208ENST00000567250 CSPG5O95196 566 aa13.14□□□□□ -0.31
SF3B3-208ENST00000567250 GNA14O95837 355 aa13.14□□□□□ -0.31
SF3B3-208ENST00000567250 ITGB3P05106 788 aa13.14□□□□□ -0.31
SF3B3-208ENST00000567250 CTSAP10619 480 aa13.14□□□□□ -0.31
SF3B3-208ENST00000567250 CASP4P49662 377 aa13.14□□□□□ -0.31
SF3B3-208ENST00000567250 TAF6P49848 677 aa13.14□□□□□ -0.31
SF3B3-208ENST00000567250 VAMP7P51809 220 aa13.14□□□□□ -0.31
SF3B3-208ENST00000567250 PMS1P54277 932 aaKnown RBP13.14□□□□□ -0.31
SF3B3-208ENST00000567250 WNT7BP56706 349 aa13.14□□□□□ -0.31
SF3B3-208ENST00000567250 TPD52L1Q16890 204 aaPredicted RBP13.14□□□□□ -0.31
SF3B3-208ENST00000567250 SV2CQ496J9 727 aa13.14□□□□□ -0.31
SF3B3-208ENST00000567250 CCDC40Q4G0X9 1142 aa13.14□□□□□ -0.31
SF3B3-208ENST00000567250 PLPP4Q5VZY2 271 aa13.14□□□□□ -0.31
SF3B3-208ENST00000567250 C9orf57Q5W0N0 161 aa13.14□□□□□ -0.31
SF3B3-208ENST00000567250 TTI2Q6NXR4 508 aa13.14□□□□□ -0.31
SF3B3-208ENST00000567250 LRRC52Q8N7C0 313 aa13.14□□□□□ -0.31
SF3B3-208ENST00000567250 C1orf127Q8N9H9 656 aa13.14□□□□□ -0.31
SF3B3-208ENST00000567250 C3orf58Q8NDZ4 430 aa13.14□□□□□ -0.31
SF3B3-208ENST00000567250 PARD3BQ8TEW8 1205 aa13.14□□□□□ -0.31
SF3B3-208ENST00000567250 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.14□□□□□ -0.31
SF3B3-208ENST00000567250 MRPL17Q9NRX2 175 aaKnown RBP13.14□□□□□ -0.31
SF3B3-208ENST00000567250 CACNG4Q9UBN1 327 aa13.14□□□□□ -0.31
SF3B3-208ENST00000567250 STXBP5LQ9Y2K9 1186 aa13.14□□□□□ -0.31
SF3B3-208ENST00000567250 IRAK3Q9Y616 596 aa13.14□□□□□ -0.31
SF3B3-208ENST00000567250 MTCH2Q9Y6C9 303 aa13.14□□□□□ -0.31
SF3B3-208ENST00000567250 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.13□□□□□ -0.31
SF3B3-208ENST00000567250 ANO9A1A5B4 782 aa13.13□□□□□ -0.31
SF3B3-208ENST00000567250 LRRIQ3A6PVS8 624 aaPredicted RBP13.13□□□□□ -0.31
SF3B3-208ENST00000567250 F8W810 466 aa13.13□□□□□ -0.31
SF3B3-208ENST00000567250 IKBKBO14920 756 aa13.13□□□□□ -0.31
SF3B3-208ENST00000567250 FSCN2O14926 492 aa13.13□□□□□ -0.31
SF3B3-208ENST00000567250 EFEMP2O95967 443 aa13.13□□□□□ -0.31
SF3B3-208ENST00000567250 KRT19P08727 400 aa13.13□□□□□ -0.31
SF3B3-208ENST00000567250 DNAJB1P25685 340 aa13.13□□□□□ -0.31
SF3B3-208ENST00000567250 POLR2BP30876 1174 aaKnown RBP13.13□□□□□ -0.31
SF3B3-208ENST00000567250 STX17P56962 302 aa13.13□□□□□ -0.31
SF3B3-208ENST00000567250 CLDN10P78369 228 aa13.13□□□□□ -0.31
SF3B3-208ENST00000567250 RBP5P82980 135 aa13.13□□□□□ -0.31
SF3B3-208ENST00000567250 MYO1EQ12965 1108 aa13.13□□□□□ -0.31
SF3B3-208ENST00000567250 BIRC3Q13489 604 aa13.13□□□□□ -0.31
SF3B3-208ENST00000567250 ADGRE1Q14246 886 aa13.13□□□□□ -0.31
SF3B3-208ENST00000567250 FAM171A1Q5VUB5 890 aa13.13□□□□□ -0.31
SF3B3-208ENST00000567250 LMBRD2Q68DH5 695 aaPredicted RBP13.13□□□□□ -0.31
SF3B3-208ENST00000567250 FILIP1Q7Z7B0 1213 aa13.13□□□□□ -0.31
SF3B3-208ENST00000567250 FAM114A1Q8IWE2 563 aa13.13□□□□□ -0.31
SF3B3-208ENST00000567250 MICALL1Q8N3F8 863 aa13.13□□□□□ -0.31
SF3B3-208ENST00000567250 APPL2Q8NEU8 664 aa13.13□□□□□ -0.31
SF3B3-208ENST00000567250 RABGGTAQ92696 567 aa13.13□□□□□ -0.31
SF3B3-208ENST00000567250 CDCA3Q99618 268 aaPredicted RBP13.13□□□□□ -0.31
SF3B3-208ENST00000567250 TTPALQ9BTX7 342 aa13.13□□□□□ -0.31
SF3B3-208ENST00000567250 EMILIN2Q9BXX0 1053 aa13.13□□□□□ -0.31
SF3B3-208ENST00000567250 ARMCX3Q9UH62 379 aaPredicted RBP13.13□□□□□ -0.31
SF3B3-208ENST00000567250 PTPRJQ12913 1337 aa13.13□□□□□ -0.31
SF3B3-208ENST00000567250 PIRO00625 290 aa13.12□□□□□ -0.31
SF3B3-208ENST00000567250 NCK2O43639 380 aa13.12□□□□□ -0.31
SF3B3-208ENST00000567250 PHACTR2O75167 634 aa13.12□□□□□ -0.31
SF3B3-208ENST00000567250 CLSTN1O94985 981 aa13.12□□□□□ -0.31
SF3B3-208ENST00000567250 SRGAP2BP0DMP2 458 aa13.12□□□□□ -0.31
SF3B3-208ENST00000567250 CCDC192P0DO97 292 aa13.12□□□□□ -0.31
SF3B3-208ENST00000567250 ODC1P11926 461 aa13.12□□□□□ -0.31
SF3B3-208ENST00000567250 AARSP49588 968 aaKnown RBP eCLIP13.12□□□□□ -0.319e-8■■■□□ 16
SF3B3-208ENST00000567250 GUCY2FP51841 1108 aa13.12□□□□□ -0.31
SF3B3-208ENST00000567250 ERVFC1P60507 584 aa13.12□□□□□ -0.31
SF3B3-208ENST00000567250 DSG1Q02413 1049 aa13.12□□□□□ -0.31
SF3B3-208ENST00000567250 TRPC3Q13507 836 aa13.12□□□□□ -0.31
SF3B3-208ENST00000567250 CAMK1Q14012 370 aa13.12□□□□□ -0.31
SF3B3-208ENST00000567250 PTPN14Q15678 1187 aa13.12□□□□□ -0.31
SF3B3-208ENST00000567250 DCAF17Q5H9S7 520 aaPredicted RBP13.12□□□□□ -0.31
SF3B3-208ENST00000567250 TCERG1LQ5VWI1 586 aa13.12□□□□□ -0.31
SF3B3-208ENST00000567250 DSTYKQ6XUX3 929 aa13.12□□□□□ -0.31
SF3B3-208ENST00000567250 TRAPPC11Q7Z392 1133 aa13.12□□□□□ -0.31
SF3B3-208ENST00000567250 FRMD5Q7Z6J6 570 aa13.12□□□□□ -0.31
SF3B3-208ENST00000567250 OR5B17Q8NGF7 314 aa13.12□□□□□ -0.31
SF3B3-208ENST00000567250 SUSD3Q96L08 255 aa13.12□□□□□ -0.31
SF3B3-208ENST00000567250 VN1R3Q9BXE9 311 aa13.12□□□□□ -0.31
SF3B3-208ENST00000567250 GPR62Q9BZJ7 368 aa13.12□□□□□ -0.31
SF3B3-208ENST00000567250 IMPG2Q9BZV3 1241 aa13.12□□□□□ -0.31
SF3B3-208ENST00000567250 NAT10Q9H0A0 1025 aaKnown RBP13.12□□□□□ -0.31
SF3B3-208ENST00000567250 CHST7Q9NS84 486 aa13.12□□□□□ -0.31
SF3B3-208ENST00000567250 DSEQ9UL01 958 aa13.12□□□□□ -0.31
SF3B3-208ENST00000567250 PRRC2BQ5JSZ5 2229 aaKnown RBP13.11□□□□□ -0.31
SF3B3-208ENST00000567250 M0QZQ0 153 aa13.11□□□□□ -0.31
SF3B3-208ENST00000567250 ADH1AP07327 375 aa13.11□□□□□ -0.31
SF3B3-208ENST00000567250 FGFR3P22607 806 aa13.11□□□□□ -0.31
SF3B3-208ENST00000567250 GTF2H1P32780 548 aa13.11□□□□□ -0.31
SF3B3-208ENST00000567250 IRS1P35568 1242 aa13.11□□□□□ -0.31
SF3B3-208ENST00000567250 BRCC3P46736 316 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms